RNA id: TCONS_00073831


Basic Information

Item Value
RNA id TCONS_00073831
length 1776
RNA type mRNA
GC content 0.51
exon number 16
gene id XLOC_037593
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 3621968 ~ 3653271 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCGGCGTCtgcaccctcctcctcctcttctggCGGCGTTCCGGATCCCAACTCGACAAATTTACAGCCACCTTCCTCAATCGCTCATGGATGTACAAGGAAGCTTGGAATGAAGATATGTGGGTTCTTGCAGAAGAACAATAATGTTGACGACAAGGGTCGAATTGTCGGGTTGTTTAACGACCAGCAGCCCAGGAGTATTTTAACCCGGGACAACGAGCGAGATTCCCGCTTCAGACGCACAGAGACGGACTTCTCCAATCTGTATGCAAGAGTAAACCTCATCCTCACAGATCTGCTTCCTGCTAAAAATGGCGAGGAGTACACCATGCAGTTCCTGCTGGAGGTGGTGGAGATCCTCACTAACTACGTGCGCAAGACCTTCGACAGATCCACCAAAGTGCTGGACTTCCACCATCCACACCAGCTGCTGGAAGGCATGGAGGGCTTCAACCTGGAGCTGTGTGACCAGCCCGAGAGTCTGGAGCAGATCCTGGTGGACTGCAGGGACACTCTCAAATATGGAGTCCGGACAGGTCACCCAAGGTTTTTTAACCAGCTGTCTTCAGGACTAGACATCATCGGTTTAGCTGGAGAATGGTTGACCTCCACTGCCAACACCAACATgttcACGTATGAGATTGCGCCAGTGTTTGTCCTGATGGAGCAGCTCACACTGAAGAAGATGCGAGAGATTGTCGGCTGGCCGAACGGAGAAGGAGATGGCATTTTCTCACCAGgagGAGCCATCTCCAACATGTACAGCGTGATGGTGGCTCGATATAAACACTATCCTGAGATTAAAATCAAAGGCATGGCGGCGGCTCCCAGACTGGTGCTGTTCACCTCAGAACACAGTCACTACTCTATAAAGAAGGCCAGTGCAGTGTTGGGTTTCGGCACAGAGAATCTGATCCTGCTGAGAACGGATGAAAGAGGTCGAGTTATTCCAGCTGATTTGGAGGCCAAAGTCATTGACGCCAAGCAGAAGGGCTTTGTGCCGATGTTTGTGAACGCAACGGCTGGATCTACAGTGTACGGAGCCTTCGACCCAATCAATGAGATCGCCGACATCTGTGAGAAATACAACATGTGGCTTCACGTAGATggAGCGTGGGGTGGAGGTTTGCTGATGTctagaaaacacaaacacaagctcaGTGGCATTGAGAGAGCAAACTCCGTCACCTGGAACCCACACAAGATGATGGGTGTTCCTCTACAGTGCTCCGCCATTCTGGTCCGGGAGAAGggTCTTCTACAGGGCTGTAATTCCATGTGCGCTGGATATCTCTTTCAGCCGGATAAGCAGTATGACGTCACCTATGACACGGGGGACAAGGCCATACAGTGTGGCCGTCATGTAGACATCTTCAAATTCTGGCTCATGTGGAAGTCAAAGGGCACTACTGGTTTTGAGAAGCACATTGACAGGTGTCTGGAGCTGTCGGAGTATCTCTACCACAAGATCAAGAACAGAGAAGGATATGAGATGGTGTTTCAAGGGGAGCCACAGCACAcaaatgtatgtttctggtacATTCCTCCAAGCCTGCGGCTTCTGCCAGATGGAGAGGAGAAACGACATCGGCTTCATAAGgtcgCCCCAAAGATCAAGGCACTGATGATGGAGTGCGGGACAACAATGGTGGGCTACCAGCCTCAGGGTGAGAAGGTTAACTTCTTCAGGATGGTGGTCTCCAATCCGGCGGTTACCAGGTCTGACATTGACTTCCTGATCGATGAGATAGAAAGACTGGGACAGGATTTATAG

Function

GO:

id name namespace
GO:0019752 carboxylic acid metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0016829 lyase activity molecular_function
GO:0016831 carboxy-lyase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-472 Predicted to enable carboxy-lyase activity and pyridoxal phosphate binding activity. Predicted to act upstream of or within carboxylic acid metabolic process. Is expressed in brain. Human ortholog(s) of this gene implicated in anxiety disorder; bipolar disorder; developmental and epileptic encephalopathy 89; schizophrenia; and spastic quadriplegia. Orthologous to human GAD1 (glutamate decarboxylase 1).

Ensembl:

ensembl_id ENSDART00000140425

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075285 lncRNA downstream 226447 3358397 ~ 3395521 (-) False XLOC_037589
TCONS_00075286 lncRNA downstream 226714 3374635 ~ 3395254 (-) False XLOC_037589
TCONS_00075287 lncRNA downstream 226714 3394009 ~ 3395254 (-) True XLOC_037589
TCONS_00075284 lncRNA downstream 341517 3265568 ~ 3280451 (-) True XLOC_037588
TCONS_00073824 lncRNA downstream 467682 3153726 ~ 3154286 (-) True XLOC_037587
TCONS_00073839 lncRNA upstream 278464 3931723 ~ 3951826 (-) True XLOC_037596
TCONS_00075288 lncRNA upstream 886216 4539475 ~ 4541821 (-) False XLOC_037600
TCONS_00075289 lncRNA upstream 1212841 4866100 ~ 4867439 (-) True XLOC_037602
TCONS_00073852 lncRNA upstream 1389828 5043087 ~ 5044088 (-) False XLOC_037603
TCONS_00075290 lncRNA upstream 1391716 5044975 ~ 5045989 (-) True XLOC_037603
TCONS_00073829 mRNA downstream 102251 3499084 ~ 3519717 (-) False XLOC_037592
TCONS_00073828 mRNA downstream 102715 3498377 ~ 3519253 (-) False XLOC_037592
TCONS_00073826 mRNA downstream 125420 3490824 ~ 3496548 (-) False XLOC_037591
TCONS_00073825 mRNA downstream 221239 3397407 ~ 3400729 (-) True XLOC_037590
TCONS_00073823 mRNA downstream 472072 3135062 ~ 3149896 (-) True XLOC_037586
TCONS_00073833 mRNA upstream 13142 3666401 ~ 3671911 (-) True XLOC_037594
TCONS_00073834 mRNA upstream 46138 3699397 ~ 3866707 (-) False XLOC_037595
TCONS_00073835 mRNA upstream 96541 3749800 ~ 3834686 (-) True XLOC_037595
TCONS_00073836 mRNA upstream 244873 3898132 ~ 3958533 (-) False XLOC_037596
TCONS_00073837 mRNA upstream 247416 3900675 ~ 3934963 (-) False XLOC_037596
TCONS_00073830 other downstream 102257 3508318 ~ 3519711 (-) True XLOC_037592
TCONS_00073827 other downstream 125389 3490831 ~ 3496579 (-) True XLOC_037591
TCONS_00073809 other downstream 1284665 2330861 ~ 2337303 (-) True XLOC_037575
TCONS_00073808 other downstream 1344476 2226463 ~ 2277492 (-) False XLOC_037574
TCONS_00073801 other downstream 1666045 1953021 ~ 1955923 (-) True XLOC_037566
TCONS_00073841 other upstream 790659 4443918 ~ 4447104 (-) True XLOC_037598
TCONS_00073868 other upstream 2755898 6409157 ~ 6409271 (-) True XLOC_037613
TCONS_00073875 other upstream 3064418 6717677 ~ 6717801 (-) True XLOC_037618
TCONS_00073897 other upstream 3869176 7522435 ~ 7539023 (-) True XLOC_037632
TCONS_00073901 other upstream 3988501 7641760 ~ 7655301 (-) True XLOC_037633

Expression Profile

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