RNA id: XM_039797469.1


Basic Information

Item Value
RNA id XM_039797469.1
length 2194
RNA type mRNA
GC content 0.45
exon number 10
gene id slc25a55a
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 25722791 ~ 25728382 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCTTAAAACTCAATGGAAATTTCCACTCTCTCTTCTCATAGCTATATCAGCCCGGCAGAGCACACGGAAACGTAGATTACGACTCGAAACACTCCTACAGAATAACTACTAGGCTACTGGACTCTATTCATTGATCTGACTGAAGAACACTTTTGATCTACATCACTACATTTTACACCTCTCTGTGAACTTATTTCAAAGTCATCATGTCTCAGCAGCAGATCAGTCTTCCAGCCAAGCTCATTAATGGAGGTATTGCTGGCATTGTTGGGGTTACTTGTGTCTTCCCCATTGACTTGGCAAAGACCAGGTTGCAGAATCAGAGACAAGGTCAGCAGGTCTACAAGAGCATGATGGACTGCCTTATCAAGACAGTTCGATCAGAGGGGTACTTTGGCATGTACAGAGGTGCTGCTGTAAATTTGACCCTAGTCACCCCTGAGAAGGCAATCAAGCTGGCTGCTAATGACTTCTTCAGACATCACCTCTCCAAGGACGGAAAGGGCCAGACGGTGTTCAAAGAGATGCTGGCAGGTTGTGGTGCAGGCATGTGCCAGGTTGTTATCACCACCCCCATGGAAATGCTCAAGATACAGCTACAGGACGCAGGCAGACTTGcggcccAGCAGCAAAAACCCGTCATGATGTCTCCCACCAAGCTTGTGGCCACGAACACCATGCTCAGCCGCTCCTACAACTCTGGAACGGTGGCCTCAGCACCACGAGCTGTGTCTGCCACACAGATAGCAAAGGACCTCCTCCGTACACAGGGCATCCAAGGGCTCTACAGAGGGCTGGGGGCGACACTGATTAGGGATGTTCCCTTTTCTATTGTCTACTTCCCGTTGTTTGCCAACCTGAACCGCCTTGGCAAACCCAGTCCTGAGGAGTCATCGCCCTTCTATTGGGCTTTCCTCTCTGGCTGTGTGGCAGGTTCTACTGCCGCTGTGGCGGTTAACCCCTGTGATGtggtGAAGACTAGACTGCAGTCACTGAACAAAGGGTCCAGTGAGGAAGCTTACAATGGAGTTGTGGATTGTGTAAGTAAAATAATGCAGAAGGAGGGGCCCTCTGCCTTCCTGAAAGGTGCTGGCTGTCGAGCTCTGGTCATTGCTCCTCTGTTCGGCATTGCACAGGTTATGTACTTCGCTGGCATTGGCGAATACATCCTGGACAACTCACCTCTGAACCTCCTTTTGGCATGAGAGCATATCAACTTGCTGGCAGGCTATGCATAGGACCATCTGAGCGTAAATGGTGGAACAACTGGCAGCTACATACCATCAGTTTACAGCAAAAGAAAATCGCACAAGTCTTGTCTGAATAAGTCAAAGGCTTATGAAGACTTCTGTGTGGTCTGACAGCTGTGTTGCACTCTAACACTTTTGTGACTTATTCAGTAGGCTATAGCCAATGTTTGCACTTAAAGCGTTTAGCCTTACTGGGCTGGGGGACTCAGAGTTGCAGTGTTATTCTTTTTGTCCTTGACGGTCCTCTTCTGTTTCCCTCTGTGAGGGAGGGGAGCTCACTCCATCAAAGAACCAGAcctatttttatgttttcttcCTTGCTATCACTttccatattttttttgttttttatgcatatgctagttttattttgaattgctGAATGCAGCAGCTTTGCAGTACTTtgtatgttttgtctttttccattttctgtCTCATGTTACAATTCCTTCCAAGTTAGAACAAAGGTTTAAAATGGGGGACACATGGGGCCCAATATAACAATTCATTGCAAAGGGATCATTTTACATTATCAGTTTGAATAACCTTGAATACCACTGATCATGAACCATCCTACTGACATGGGACCATATGGTCTGCCAAACCATAACCGTGTCCTGTTATATATTTAATGTTAGTCCTATAGTTGTTAGTAGTCTGTGAACTGCAGTGTTTGTATCTTAATACCtgcaaaaaaaacttgagatgCATTCATGCACACTATGTATGTTTGTCCACATAACGTTACATATGCATACCAGAACCTCAAAAGACTTTCTTTGGTTTATGCCTTGACAGAGCAGACTGACATTTCTCTCTGAGCAAACACTCTTAGCCAAAAAAAGCATTATTACTGTGACTGAGCGAGAGAAAGATGACTGTTACCATATGTTGTGTTTGTAAAGGGTTTTTGTACATACCATTAAACTTTGCAATGCACTCA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55973 lncRNA upstream 36807 25682467 ~ 25685984 (+) False slc16a1a
TU55969 lncRNA upstream 175951 25546509 ~ 25546840 (+) True G41630
TU55968 lncRNA upstream 176491 25545917 ~ 25546300 (+) True G41629
XR_005639060.1 lncRNA upstream 221820 25499083 ~ 25500971 (+) True LOC120558141
TU55900 lncRNA upstream 408532 25313719 ~ 25314259 (+) True G41570
TU56052 lncRNA downstream 142566 25870948 ~ 25871887 (+) False LOC120558082
TU56058 lncRNA downstream 156840 25885222 ~ 25887733 (+) True G41694
TU56061 lncRNA downstream 177920 25906302 ~ 25907633 (+) False LOC120558088
XR_005638956.1 lncRNA downstream 193372 25921754 ~ 25923063 (+) True LOC120557323
TU56139 lncRNA downstream 273099 26001481 ~ 26002751 (+) True G41746
XM_039797472.1 mRNA upstream 3791 25717205 ~ 25719000 (+) True tshba
XM_039799208.1 mRNA upstream 20423 25693331 ~ 25702368 (+) False sycp1
XM_039799210.1 mRNA upstream 20423 25693574 ~ 25702368 (+) False sycp1
XM_039799207.1 mRNA upstream 20423 25693602 ~ 25702368 (+) False sycp1
XM_039799209.1 mRNA upstream 20423 25693832 ~ 25702368 (+) True sycp1
XM_039798936.1 mRNA downstream 38710 25767092 ~ 25872919 (+) True LOC120558082
XM_039798938.1 mRNA downstream 101729 25830111 ~ 25831910 (+) True LOC120558083
XM_039798939.1 mRNA downstream 116082 25844464 ~ 25852160 (+) True LOC120558084
XM_039798934.1 mRNA downstream 133287 25861669 ~ 25872919 (+) False LOC120558082
XM_039798935.1 mRNA downstream 133287 25861669 ~ 25872919 (+) False LOC120558082
TU55524 other upstream 1961840 23748910 ~ 23760951 (+) False cbfa2t2
TU55525 other upstream 1961840 23757758 ~ 23760951 (+) False cbfa2t2
XR_005638988.1 other upstream 3730992 21950376 ~ 21991799 (+) False itga7
TU54259 other upstream 5574101 20148104 ~ 20148690 (+) True G40353
XR_005638939.1 other upstream 5799242 19917889 ~ 19923549 (+) False abhd14b
TU56251 other downstream 540220 26268602 ~ 26273315 (+) True G41825
TU56292 other downstream 814125 26542507 ~ 26548799 (+) False G41850
TU56293 other downstream 814125 26542507 ~ 26548799 (+) False G41850
XR_005639013.1 other downstream 924878 26653260 ~ 26698571 (+) False anks1ab
TU57106 other downstream 3512031 29240413 ~ 29242253 (+) True G42449

Expression Profile