RNA id: XM_039797513.1


Basic Information

Item Value
RNA id XM_039797513.1
length 1564
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC120557311
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 40961708 ~ 40989920 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCGCCGGAAACATGTTTGGTGTTAAACTTTGGTTGACTCTCTTCTGTCTTCTGACTTTAAATGGATTAATACTCGGACAGGAACACGGTCCAGGTGGTGTTAGAGTGGTTGTGAAAGAAGGCAGAGATGTTGTGTTACCCTGTTCTCTCAGCACCAAGGAGAACATTGTACAAGAGGTCTTTGACTGGAGGAAAGATGCTCAGAAACATAGACGTCTGAAGGAGGTGTTCGTGTATGACATAGGCATTCATTACAACGGTCGAAGTGGTCAGAGTGAAGAGTTCAAAGGTCGAGTCTCTCATTTTCCAGATCAACTGGAACACGGCAACGCCTCCATAATCATCAGAAATACAAAGATATCTGACAGTGGAGAATACACCTGTGAATTTCCCCGTCTTCATCAAATACTCTACATTGAACTTGTTGTCGCTGCCTCACCAGAACCCTACATCAGGACTCTGAAAGCCACAGCTGGCTGGgccctgctgcagtgtgtggtCCGAAGGGCGGCTCCAAAACCTAAACTAGAGTGGGAGGACAGTGCTGGAAACACACTTCCTGCTGAGGAACCACAGACCTCAGAAAGAGGAGGCAGCTACAACATCACTCTCAACACTACTGTGACCAAGACAGACAACTACCTCTGTGTAGTAACACAGGAGGAAATCAGTCATCAGACTCACTCTGAGACCTCTGTTCATATCTGTGAGAAAGAGTGTGAGGACTCCTTCAGTAAAGTGGCCATCGGATGTTTGTTTGGTGGATTGGTTTTGGGAGCTCTGATACTTGCAATAGTTCAAGCTCTGCTTGCTTGTACAAAGGTCATCGAAATACACGCCATTAGACGTTCTCTTCAGGAAGGAAATGATTCGGGCCACCAGGAAAACTGTTCATGTGAAGAGTGTTCAGATCTGCTACATTCACAAACTGGTCGATGACGTTAAGTCCATTTTaaaggtgtttgtgtgtttacttGTACATCTATCTTTGTGAGAACCAGTTTGACTTTTTGAATTTGTGCGGTCCTAACTTTCAGACAGACTCTGAAATGCCTGTTTGAGGGTTCAGACCTGGTTTTAAGATTCAGCTCAGAATCAGGTTTGGGTTAAACATTTAGATCTGAAGTTTGATGTTAAGGAATGCATTATTTCAACGAGCGTCCTCACAATTATAGAAGtacggtgtgtttgtgtgtccagtgtttcctctgtggattttgtagtggcggcccaccatggcaacatttctgtagctgtcctcaatttaggtcatcgtgtcgtctcatctccggtttttccttcATCCACCGCGTGTGATTGCGTGTGCGCCTCAGTCGCGGGGGAActcagcagccccgcccgctgcacaGAGCCCACAGGATTGAAACCGCAGCCGCCTCAGCGGCTTCAAAGTGAAAAATGGTTCCAGCGtacattgattttaaaatgtctaCAGGTTGGAAGGACTGTCTGAaatgtctttcgctgtacgttttgttggtaacgtgagatgttcgagtcacacacgtctcgtcttcataacagaaacaaggaaattaatttga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59858 lncRNA upstream 31103 40932029 ~ 40938117 (+) False G44711
TU59759 lncRNA upstream 38387 40848815 ~ 40930833 (+) False LOC120557312
TU59882 lncRNA upstream 101613 40827420 ~ 40867607 (+) True G44731
XR_005639004.1 lncRNA upstream 194913 40773029 ~ 40774307 (+) False LOC120557697
XR_005639005.1 lncRNA upstream 196786 40759809 ~ 40772434 (+) True LOC120557698
TU59903 lncRNA downstream 55925 41045844 ~ 41077132 (+) True G44751
TU59904 lncRNA downstream 55925 41045844 ~ 41077132 (+) False G44751
TU59905 lncRNA downstream 55925 41045844 ~ 41077132 (+) False G44751
TU59911 lncRNA downstream 314859 41304778 ~ 41305781 (+) False G44757
TU59912 lncRNA downstream 314859 41304778 ~ 41305781 (+) True G44757
XM_039797515.1 mRNA upstream 37837 40922588 ~ 40931383 (+) True LOC120557312
XM_039797516.1 mRNA upstream 37837 40922588 ~ 40931383 (+) False LOC120557312
XM_039797511.1 mRNA upstream 54966 40872849 ~ 40914254 (+) False LOC120557310
XM_039797163.1 mRNA downstream 368222 41358141 ~ 41360354 (+) True LOC120557130
XM_039796702.1 mRNA downstream 372584 41362503 ~ 41365014 (+) True LOC120556884
XM_039797165.1 mRNA downstream 416624 41406543 ~ 41412621 (+) True LOC120557132
XM_039796466.1 mRNA downstream 635288 41625207 ~ 41628189 (+) False LOC120556749
XM_039796467.1 mRNA downstream 635907 41625826 ~ 41628189 (+) True LOC120556749
XR_005638994.1 other upstream 301714 40666199 ~ 40667506 (+) False LOC120557687
XR_005638993.1 other upstream 427989 40519942 ~ 40541231 (+) False LOC120557674
TU59833 other upstream 462650 40480676 ~ 40506570 (+) True G44690
TU59835 other upstream 463164 40504352 ~ 40506056 (+) False LOC120557692
TU59760 other upstream 805610 40156208 ~ 40163610 (+) False LOC120557666
TU60455 other downstream 761084 41751003 ~ 41763651 (+) False LOC120557139
TU60464 other downstream 879811 41869730 ~ 41880367 (+) True G45186
TU60460 other downstream 907103 41897022 ~ 41902618 (+) False dynlrb1
TU60468 other downstream 915610 41905529 ~ 41912086 (+) True map1lc3a
TU60467 other downstream 915688 41905607 ~ 41912086 (+) False map1lc3a

Expression Profile