RNA id: XM_039797525.1


Basic Information

Item Value
RNA id XM_039797525.1
length 4462
RNA type mRNA
GC content 0.44
exon number 14
gene id tacc1
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 11200170 ~ 11232830 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGTTCATTTCCCATCCAGCCACATGGACTAAGCTCCGTCACGCAGAGAGAACAACTATTTTCCCTCAAAGAGCGGCACCTCCAAAAGCAGTCAGAGCACAAACTCCCTTAAGGACCTCTGTCACTGACCAAGGACTTTTCTTTCCACAGTGTTGTTAAGGACACAAACCTCCCAGCAGATCCGTCACAGCCCATCAGTCCTCAGAGAAGCCAAGCTCTGACTCAGAGGGTCATTTTGGCACTCCTGAAGCAGCAACTCCTGTCCACTCACCCCCAACCTTCCCAAGAGAGCTGGAGAACAACAACACTGATGCAGACAAAACAGATGTGGATCAGGATGAGCACATGATAGTGACTGCTCCGGTTTGGGATCAAGATATTTTGCTCAGCCACAACATGGGTCAGGATGAGCCTGCGGTCCCCATGGGTGGCCCACTGGAAGTAAACATCCAGACCCTGGAAGCAGAACAGACAGAGAATCTTCCAGAAGCTTTGGGCTCTGTGCCTGTCCCTGCTCCATCCTCCGTGAAGGAAGCACCTGAAGTGGCTAAATGCACAGTGCCATCCTCTGAGCAATCCCAATTCCCAGTCCCCGTCCTAGTGGCAGATCGTGTCCCCGATGTGGCTCCAGCTCCTGTTCCTGTTCCTGCTCCAACCCCAGAACCAGACTCAGTTCAGAGCAGTGAACCTGCAGCCAGACCAGCTCCAGAGCCCCCTGAGCAGAAACCTCTTGTTGAACCAGAACCACAGTGCAATGGCCTCGACCAGACAGAGCCTactaaaaagactaaaaccaGCAGGTCTAAGCCTCCATCCCTGAAGGTGAAGGCCACGCCGAACGAGCTTGCACAAACAAACGAGGAAGAAGAACTTCCTCTTCCCAAGGCCACTTACAAATTTGACCCTGACCAGCTGGATGACAGCTTTAACCCCTTCACCTGCGGCGGATCCAAAATCCAAAACTCTCCCCCACCGTTCGGTACAAGCTCTCTCCCCAGACTCGAGCCACTCGGTAGCTccttgcctgtgtgtgaggcCAGCTCAGCAGCTCCAGCCGAAGCGGAGATGATGGAGTCATCGTCAGAGTCGAAGTCTGTGATGCTGGAGTTCGGTCTGGACGAGGGGACAGTCAGCAAGCCACCTCCGAGGAAATTAGGTGGTAAAAAGACAATCAGCAAACTTGCAGCTAAGAAGCAGAAGGCCAAAGGATCAGGGGCTTCCTGCCAACCAGCACAGGAACCCACTGTGTCAGAATCAGATTCTCAACCAGCATCAGAACCAGTTTCTCTACCAGCGTCAGAACCGGTTTCTCTACCAGTGTCAGAACCAGTTTCTCAACCAGTGTCAGAACCTGTTTCGGATGCTTTTCCAGAAACTGCTTTGCCAGTTTCAGACTCTACTGCAGCTCTGAACCTTGACGATATTCCTATTCCTAAATCGGGAACATATAACTTTGATCCCAGTCAGTGGGACGACCCGAACTTCAATCCGTTTGGTAGCAATAGCACGGTGAGCAGCTCTCCAGTGCTCCCTAAGAGCTCCTACAGTTTCAATCCAGACAGTTTTGATGAATCTGTGGACCCTTTTAAACCCTCCAAAGCTATGAGCGCAGAGGACACGTCCAGTAGCGCCCCTCAGCCAGAGACAAAAGTGAAAGATGGAGGCAAACAGAAATCAGGGCACCCAGCGGGAGAGAAGAAAGTGAGACAGATTCCCAAGAAAAGCAAAGAGAGGACAATCATCCCCAGGACATCTGAACAAGTCAAGtttctctgttttctgttGAATTCCTGTAAAGTTCAGAAATATGATGAGAGCCAGTCCTTGGTGCTTGACGTGTGCAATCAGGATGAGGATGAGGTGGTGGCTCAGACCCCAGAGATCACTAAGCGAGTTCATCACGCCACTGATGAGGAGAAGCTTGCCTCCACTGGCATTGTGGGCCAGACACCAGACAGCcaggaggagaaaggagaaCCCGAATACTATAAAGCACCTGTGAAAAAACAGCCAATCAATGATATATCTGTTATGGATGGTCCTGAGACTAAGATTACAGATCACCTGGAGGAGGATGACACCTGCAGTCTGAAAGATGATATAAGTGAGATATCCATGAACCTAACAACAAAGGTGACCAGCAGTGAGGGCCCAGCCACAGCAGCCCTGTCCCAGGACAACATACCTCTGAGTGAGATGGACAAGGCCGCAGTGCTCACCCTGATCAGGGAAGAGATCATCACTAAAGAGATGGAGGTCAATGAGTGGAAGAGGAAGTATGAGGAGAGCAGGGCTGAGGTTTTGGAGATGAGGAAAATCGTTGCAGAGTATGAGAAAACAGTTGCACAGATGATTGAGGACGAGCAGCAGCAGAAGACCCTGTCCTGCAGTAAGTCCGTCAGACAGCTGACCGTAGAGAGGGATCAGGCCTTGGCTGACCTCAACTCTGTGGAGCGCTCCTTCGCTGACCTCTTCAGGAGGTATGAGAACATGAAGGGAGTCCTGGAGGGCTTCAAGAAGAATGAGGAGGTGCTGAAGAAGTGTGCACATGACTACCTGATGCGTATCAAGCAGGAGGAGCAGCGATACCAAACTCTCAAGGTGCATGCTGAGGAGAAACTTGATAAGGCTAATGAGGACATCGCCCAGGTACGTGCCAAAGCCAACTCTGAGAGTGTTGCACTAAACGCGAGCCTGAGGAAGGAGCAGATGAAGGTGGAGTCACTTGAAAGAGCTGTCCTTCAAAAGaATCAAGAGATCGAGGAGCTCACTAAGATCTGCGATGAACTGATCGCCAAAATGGGGACAGAATAAGATGCCTTTAATCAATATTTCACTGCAACATTTatgtaaatactgtacatgATCACACTTCAAGCACCTGTCAACCGTATCTTTCTCTCTGCTCATATGATtttgaaaaatacatttgaaatgcAAAATGGTTGCTCTTTTCAGATTGAAATATGAAACCAGCGCAATAATTGTTCATAGTGGAAGTGGAAGAAGCACAAAGCTATCACAAGGTGtattttaattactttgaaGGAGATTTATTGATCTTTGGTTAAGGATCTACAGCAAAGGCTCATTTTATAGTTCAAAGATTCATCAGGTTTTAACTGTTGACCCTCTTCATTGTAATGTATGTGCTTTTGTTCTATTACAGAGAATTTCCATAACCGTTTTATACAGCATGTTTAACACCAAACTAACAATAGTGGAACTAAGGGAAAGACAGTGTGGGCACACAGCACAGACATCTTTTAGCACAGTGCGTCTACACTGTAATTACCTGTGTTGATAATACAGTTGTCAGAAAGGACAAATCTCTCTATTGAGTGCCTAAACTGATCATAGTGTATTAGTTCCCTGGCATATAGATAATAGATACAGATAATAGTAATATTACTTATAGTATTTCTTAAGTTGCCTTtgagtttgtttgtctgtgtttgacATGGATATATGGAAtggtatatattgtatatatatatggaaataTATACAATGTGTGATGAAGTCCTCAGTTATACAGAGTTTGAGTTTTGACATCGTGTTTATTATGCCTACCATAAATCTTTGGGATTGTTAACTATGAAGAGCACTTAAGAGAATCTTGAATTCTGTTCTATGATATCGTGGTTCATTTGGAGATAGTTTGATGGGTGGAAATTAAAGTTTAGTTTGAAACTTAAGTAGTGAAAACTTTGCTCTCATTATACTGTAAAATTATTAACATATGTGCCATGTTTAATTTTCTCGCTCTGCGTTTGAATGCAGGAAAGTAAGAAACACATCCTGACGTTGCCATCTAGATATTTTTGGactgtattcatattttatgtAAGCCCAAATGTTGCTGGTGTgcctttattttgttaaaaaaagaaagaaatttttttttttcttagatcCTTCATGCCGTTGTTTCCAAATTTGGTTGCCAAAATGTACTATATACATCATATATCTTCTATGATCAAAACACCCTGAATAACAGTGCGTTATAATGGGTTTGCAGTTAAGGTGAaggtctgtgtttttgtgagcAGAGCGTTCATCATGTAATAATATCTTTATTGCTAACATCAGAATATTCTGGTCCAATTGAACCTGAAGAAGCTCACGAGTGCATTTCTGGTCAGATGTGTTTGAGATATAAAGGACAGATTCTTCTGTGGATGCCTTGTTTCACGTCAGCACAATCAATTGCCAAATGTCCTTGTAAAATGACATGAGTTTCAGTGTGACCCTGTGTCCTGCTGTAGTGGTGTTACATTAGTCTGAAGGTGCTTTTTGATGCAAACCCATTGTTACAGTCCAATATATGTAAATTTTATACTTTATGAAAAGAATATTGTTCcaaatatttgtaaaattgaAGAGTAAAGTATACCCAGATTGTATGTTAACTGCTATATTTTGTGCATTCCTGAATAAATGGTTAAGATTTAATATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50303 lncRNA downstream 38499 11161134 ~ 11161671 (-) True G37486
TU50302 lncRNA downstream 42293 11157425 ~ 11157877 (-) True G37485
TU50300 lncRNA downstream 43558 11155571 ~ 11156612 (-) True G37483
TU50297 lncRNA downstream 45806 11147913 ~ 11154364 (-) True G37482
TU50224 lncRNA downstream 52734 11025135 ~ 11147436 (-) True G37424
XR_005639010.1 lncRNA upstream 508740 11741570 ~ 11743450 (-) True LOC120557711
TU50519 lncRNA upstream 517202 11750032 ~ 11750373 (-) True G37670
XR_005639009.1 lncRNA upstream 530251 11763081 ~ 11780034 (-) True LOC120557710
TU50507 lncRNA upstream 537851 11770681 ~ 11771336 (-) False LOC120557710
TU50506 lncRNA upstream 539205 11772035 ~ 11773566 (-) False LOC120557710
XM_039797721.1 mRNA downstream 3785 11165773 ~ 11196385 (-) True loxl2a
XM_039798885.1 mRNA downstream 90444 11104934 ~ 11109726 (-) True LOC120558048
XM_039797367.1 mRNA downstream 173832 11022234 ~ 11026338 (-) False LOC120557233
XM_039797365.1 mRNA downstream 173832 11022234 ~ 11026338 (-) True LOC120557233
XM_039797364.1 mRNA downstream 185620 10990459 ~ 11014550 (-) False LOC120557231
XM_039799017.1 mRNA upstream 12313 11245143 ~ 11263489 (-) True stx18
XM_039799018.1 mRNA upstream 12707 11245537 ~ 11263489 (-) False stx18
XM_039797568.1 mRNA upstream 108163 11340993 ~ 11343153 (-) False LOC120557334
XM_039797565.1 mRNA upstream 110646 11343476 ~ 11361140 (-) False LOC120557331
XM_039797564.1 mRNA upstream 110646 11343476 ~ 11361140 (-) True LOC120557331
TU50233 other downstream 147085 11051299 ~ 11053085 (-) True G37432
TU50209 other downstream 256542 10932409 ~ 10943628 (-) False fam219aa
TU50210 other downstream 256542 10932409 ~ 10943628 (-) False fam219aa
TU50114 other downstream 663817 10534954 ~ 10536353 (-) False tpgs2
XR_005639079.1 other downstream 705848 10494203 ~ 10494322 (-) True LOC120558250
TU50355 other upstream 107928 11340758 ~ 11343123 (-) True LOC120557334
TU50558 other upstream 683059 11915889 ~ 11924426 (-) False dlgap4b
TU50740 other upstream 890615 12123445 ~ 12124452 (-) True G37799
TU50753 other upstream 983373 12216203 ~ 12217190 (-) True G37805
unassigned_transcript_199 other upstream 1099197 12332027 ~ 12332098 (-) True trnaq-uug

Expression Profile