RNA id: XM_039797527.1


Basic Information

Item Value
RNA id XM_039797527.1
length 2558
RNA type mRNA
GC content 0.49
exon number 14
gene id aggf1
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 11219389 ~ 11226582 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGTTATCGTCTTCAGTTAAACTAATGGAGAATGAAGATGGAGAAAGGGACACGGAGTCTGAAGAGGCTGAGCTCCGTCTGAAAGTAGAGTCGTTGAAGCATGAGCTCCACGAGTGCAGAGCCGAGCTGACCAAGTTACAGAAACAACTGAACCAGTCCGAAAGACTGCAGAGGAGCACAGAGAGCTACAACGAAGACCTGAGGAAACAAGTTGACCATCTGAGTGCAGAGATTCATGACCGGAAGAAGAAAGATAAAGACAGAGTCGACAGTGAAACTcagacagaagaaaatgtaTGGACAGAAACTGAGTATTACAACTACTACTATGGAGGCTACTCTCAGAACCCAGACACTACAGACGGCCTGAACACAGTAGCAGCAGTGGATGCAGCTAATGGCAGCGAGGCCGCAGAGGTTTCAGCACCAAATGAAGCAGCTGCTGCTAACCCTCCCACTGACGACAGTGTTGCAGTCACAACAGAGgatggtgatggaggatccATAGCGGATATGTTGAGGGCCACTGCTGAAGAGGCAATGACACAGACTGGGTTTGTCTTCGATGAGACTACTGGAATGTACTATGACCACAGCACGGGCTTCTACTACGACTCGGCCAGTCAATTATACTATGATGCCAACACAGGCATTTACTACTACTATGATGCAGAGAGTGGGCGATACCAATTTCATTCCAGGATTGAGGTGCCTGCTGCAGAGCCTTGCCATGACAAGAGCACTGGTGAAAAGAAGGGCAAAAAGTTTAAGAAAGGGTCCAAGAAAATCTCACACCAGGATGATAAGGAAATCATATTTGATGAGGTACAgttggaagaagaagaaatggacTGGGTCGAAAAGCCAACAGCTAAGAGGACCACAGAATCCCGAAAACTGAAGCGAAAGTCTCGCAGTCCCGAAGTGGCTCCCCGTAGAAAAGACTCTTCTAAACATAAAGAGGTTAGCGGCAAATCTTTGTCAAAGAGGAAGAAGCAGAAAACCGGTTCACACGATGATGATAAGGATGATAAGGACAAAGGTAGATCaaggaagaaaaggaagaaatcCAAGTCAAAaaagcagaagaagaaaaagcgtCCGGTTCGGAGCAATGACTCAGAGGGGAACAGCGAACCGGAAGAGGGTGAGATTACAGAGTCGGAAAGAGAGGAGTGGGGGTCCACTCCCTCGTTCTCATCATCTTCTAGCTCCAGCTCCAAGGAAAGCCCAGAGTCAGAAATGGAGACTCAGAGTCATGAAGTCACAGACATTTGGCCGCCCTGTGTAAGAGTGACAGTGGTCAGATCTCCAGTGCTGCAGGTGGGCACTCTGTTCATCATCACAGCTGACTCTCGAGCCACCGTTGGCAGAGAGAAAGATATGGACCATGCAATCCGAATACCAGAAATGGGAGTCAGCAAGTTCCATGCAGAGGTGTACTTTGACCAGGATCAGCAGAGCTACATGCTGGTGGACCAGGGAAGCCAGAATGGAACAGTCATCAATGGCAACAGGATCTTGCAGCCTAAAACCAAATGTGAGCCACATGCGCTGATGCACGGTGATGAGGTGAAGATGGGAGAGACCGTGCTGTCCTTCCATATCCACTCGGGCACTGATACCTGCGATGGCTGTGAGCCTGGTCAGGTGATGGCTCACCTCAGCAAGCACAGGAGGGAGGAGAATACTGCAGGCCCTGCTCTCACCAAAGAGGATAAAGAAGCACTGAGACAAAAGGAACTGAAGCAGATGAAGGCCAAATATGGTCTGCAGAGCAGTGAGTATGAGGAGGCCAAAGCCCTGAGGAACCCCAGATACCAGGACCGAGCAGAGTCTCGACGACAGACGGTGGGCAGCGAGGGCGTTTTCCAACGAGATGATGCGCCTGCTTCTGTTCATCAGGAGATCAGCGAAGTCAATAAAGGACGGAAAATGCTGGAAAAGATGGGctggaagagaggagagggccTGGGTAAAGAGGGAACTGGAAGAAAAGACCCGGTTGAACTGAAAATCAGGAAGTCCCATTCAGGTTTGGGGGCTGGTGGTGCCATGTCTCTGGACAGCGTCTCTATGACCAAATCAAAGTCCCAGAAGAACTGGGAAAAAGCGCGCGAGAGATTTGCTGATTCGTGCCAGCCTGACATGCTGTCTCCTAAAACGCAGAAGAACAAGTCGCCCAAAGCCTGGGTCCGAGGAGAAGAGACTGAGGCTACAAACACACAAGCAGGTGGTGATGCAGAcggccaaaattaggaatacgTGCGAGAGAATATACTGTGGATTTAAAAGCTGGGAGGCTTGATGCGTATCTCTCTCCTGTCAAAGGAAATGTGATATACTGTCTGTAAATTGACAGAGCTGCCACTGTGCCTCCCAGAACAAAAGGATATGGAAAGGAAAATGAATCGCCTCGAGCAAATATTGACACAGTGAAGCTATATTTCTCACAATGAGATCATGCTATGACAAGACAACTGTGGATCTGTAACTGAGACAATCCTGTAACTGATCATGTTAAACCAGTTGCAACTTTTTGGTGTAATAGTGCCCCT

Function

GO:

id name namespace
GO:0001525 angiogenesis biological_process
GO:0001570 vasculogenesis biological_process
GO:0051897 positive regulation of protein kinase B signaling biological_process
GO:0060841 venous blood vessel development biological_process
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50183 lncRNA upstream 207085 10997230 ~ 11012909 (+) False G37397
TU50185 lncRNA upstream 221161 10997230 ~ 10998833 (+) True G37397
TU50154 lncRNA upstream 276368 10936683 ~ 10943626 (+) True G37383
XR_005638986.1 lncRNA upstream 290607 10928504 ~ 10929387 (+) False LOC120557560
TU50148 lncRNA upstream 290610 10928477 ~ 10929384 (+) True LOC120557560
TU50343 lncRNA downstream 118158 11344740 ~ 11345059 (+) True G37521
TU50344 lncRNA downstream 120504 11347086 ~ 11347671 (+) True G37522
TU50345 lncRNA downstream 122554 11349136 ~ 11349368 (+) True G37523
TU50346 lncRNA downstream 122968 11349550 ~ 11349773 (+) True G37524
TU50348 lncRNA downstream 127694 11354276 ~ 11354743 (+) True G37526
XM_039797722.1 mRNA upstream 52188 11156708 ~ 11167806 (+) True r3hcc1
XM_039797723.1 mRNA upstream 52188 11156708 ~ 11167806 (+) False r3hcc1
XM_039796698.1 mRNA upstream 63580 11153550 ~ 11156414 (+) True LOC120556881
XM_039796696.1 mRNA upstream 67708 11149713 ~ 11152286 (+) True rplp0
XM_039799105.1 mRNA downstream 10125 11236707 ~ 11243365 (+) True LOC120558172
XM_039799019.1 mRNA downstream 36928 11263510 ~ 11266070 (+) True LOC120558115
XM_039796527.1 mRNA downstream 103974 11330556 ~ 11332646 (+) True msx1a
XM_039797567.1 mRNA downstream 134824 11361406 ~ 11375812 (+) True LOC120557333
XM_039797569.1 mRNA downstream 149953 11376535 ~ 11382180 (+) True LOC120557335
TU50184 other upstream 221857 10997230 ~ 10998137 (+) False G37397
TU49895 other upstream 909998 10305187 ~ 10309996 (+) True G37197
unassigned_transcript_198 other upstream 2397263 8822660 ~ 8822731 (+) True trnae-cuc_13
unassigned_transcript_197 other upstream 2397686 8822237 ~ 8822308 (+) True trnae-cuc_12
unassigned_transcript_195 other upstream 2403597 8816325 ~ 8816397 (+) True trnar-acg_14
TU50347 other downstream 125496 11352078 ~ 11352387 (+) True G37525
TU50377 other downstream 164157 11390739 ~ 11394334 (+) False LOC120557336
TU50430 other downstream 553596 11780178 ~ 11805394 (+) True G37597
TU50615 other downstream 1026484 12253066 ~ 12254974 (+) True G37714
XR_005639029.1 other downstream 1048178 12274760 ~ 12278624 (+) True LOC120557851

Expression Profile