RNA id: XM_039797541.1


Basic Information

Item Value
RNA id XM_039797541.1
length 3554
RNA type mRNA
GC content 0.50
exon number 24
gene id si:dkey-166d12.2
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 26845850 ~ 26962727 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAAGACGAGGAGGGTAGGGCTGAAAGGGAGAATAGAAGGAGGGCTACTCTCAGTATCATCTGACGGGAGAGAGGCTGATCCCCGACAGCAGGTGTTGGAGCGTAGAGAGACTGAGTCAGACGCACGGAGCTAGGGAGCGATACGTAGAGGAGCACCAAGTTGTTGAGGAGAAGAGACTGAGTTGCAAGTGAGGCACTGCAGACAGGAAACAAGATGGAAGGATTCCTCGTATATCTGATGAAGTAGAGCCCTCACTAGCACACTCCCACCCTCCATTTCCTCTACCCTCACTTACAAAGGGTTGCAGAATGGATGAGCAAAGatgccccctccctccccccctcaaAACAGAAGAGGACTACATCCCTTATCCCAGCGTTCATGAGGTTCTTGGTCGCATTAGCCCTTTCCCACTCATCCTGCTGCCCCAGTTTGGAGGCTACTGGATCGAGGGGACCAATCATGAGCTTAAAGACCCACCGGAGGCTGATCAACCCCCCTGTCCTACCTCCCACATCAAACTGGAAACAAAGAGCACCGCCAAGATCTACAGGAAGCAATTCATGGGCAAGGAACACTTTAATTATTACACCATGGATGCTGCCCTGGGCCACTTGGTCTTTTCCATGAAGTATGATGTCATTGGGGATCAGGAGCATCTGCGCTTGATGCTTCGCACAAAGCTAAAAACATACCATGATGTGATTCCCATTTCCTGTCTTACCGAGTTCCCCAATGTGGTTCAGATGGCCAAGCTTGTTTGTGAAGAAGTAAACGTGGATAGGTTTTACCCTGTCCTCTACCCAAAGGCATCCAGGCTCATTGCTACCTTTGATGAGCATGTGATCAGCAACAACTTCAAGTTTGGGGTTATTTATCAAAAGTTTGGCCAGACAACAGAGGAGGAGCTGTTTGGGAACATGGAAGAAAGCCCTTCTTTTGTCGAGTTCTTGGAGTTTCTGGGCCACAAGATTGAGCTTCACGACTTCAAAGGattTCGGGGCGGGTTGGATGTCACTCATGGACAGACAGGGACAGAATCTGTCTACACAAATTTCCATAATAAGGAGATTATGTTCCATGTGTCCACCAAGCTGCCTTACACAGAGGGAGACTCACAGCAGCTGCAGAGGAAGAGGCACATAGGCAACGACATTGTAGCCATCGTGTTCCAGGAGGAGAACACGCCCTTTGTACCAGACATGATCCAGTCCAACTTCCTGCATGGGTATGTGGTGGTGCAGGTGGAGAACGCGTGCACGGACAATGTCACCTACAAGGTGTCTGTGACAGCACGGGATGATGTACCTTTCTTTGGGCCAGCTCTGCCTAACCCTGCAATCTTCAAAAAGGGCCCAGAGTTCCGTGAGTTCCTCTTCACCAAGCTCATCAATGCAGAGTACGCCTGCTACAAGGCTGAGAAGTTTGCCAAACTTGAGgaGCGCACACGTTCAGCCCTGTTGGAGACTCTGTACGAGGAGCTGCACATAAACAGCCAGTCCATGATGGGTCTGGGTGGAGACGAAGATAAGCTGGAGAACGGGGCCGCTGGAGGGGGGGGAGGCTTCTTTGAATCCTTTAAGCGGGTCATCCGCAGCAGAAGCCAGTCTATGGACGCCATGGGCCTCAGTAACAAGAAGTCACACACAGTCTCCACTAGTCACAGTGGCAGCTTTACCCACAATCCCGCAGAGAGCCCCAAAACCCCAGGGATTTCATTGCTTGTTCCAGGGAAAAGTCCCAGTAAATATGGACGCCGAGGCAGTGCCATAGGGATAGGAACAATAGAAGAGTCATTGATCATTCCTGGGAAAAGCCCAACCAGGAAAAAGTCTGGGCCCTTCAGTTCCCGTCGCAGCAGTGCCATTGGCATCGAGAACATCCAGGAGGTCCAAGAGAGGAGCCGAGAGGTGTCACCCAGCACCCAGAGGACACCGGAGGGCAGCCTCTTTTTGCAGTCAGACAACTCCTCCAATCACAGCTCTCCAGAATTCCCTGCAACTAAGAACAGTTTGGCGATGTGTTGCAGGGCGCCGTCCATCCCCGAGGCTCAGGACCTTTCCCGCTCCTCCTCCAACGCCAGCAGCTTTGCCAGCGTAGTGGAGGAGCACGAGAACGAGCACGAGGCGGAGGACGAGTACGACACTGGACTGGAAAGTGCGTCTTGTGTTACGCCACTCAAGGGAGACTCATTTGTGTACAGCTCTGCGGTGGAGGACAGTGCCTGCAGTACCAGCCAGGGAAGTTTCCCAGCAGCGTCTCGTCTTCAGCAGCAACCAGATGGAGCGAAGACATCAGAGCCGAAGGGGACAGACAGCCGGCCCAAGACGGAGCGCCCCTCGCAGGAGCACTAGTTCTCATCGAActgttagacacacacacctgatcACTGCATCGACATCCATTTTCAGCATTCCCATAAGAGGCACCGTTTACCAAAAACAAGCCAAGGGTATGTGAACTCCACCACTGACACAGAAGAGGAGTAGAGTTAGAAGCCAGATCTCAGAGACTGGTAGATCTTCCTTTGTATGTTTGGCATGGATTTGCTGCCTGTCGTGACAGACACCCAGCTCCATGGACATGTACCTACCTATCGCCCTCATTCCAGCTCCATGTGGAACCCTCCTTGAATGCTCGAGGCAAAGGAAAAGAGACGTCCACAACCATGCAGCATCACTACTGACTGTCATCCGTCAGCCGGCTTGGCAGGATAAGTCTGGCTGCTTACTAACTTTCAGGCCAGGACGTTTTGAGACGTAATTCTTACTTTAAACACTCAAATGCTGTCCTCTTTAAGAGATCAGGGTTTGAACAGGGGTTTAATCTTGGGTCTAAAAGAGTCGTGAAAGAAATCGAGACCGATCAAAAAACTGGTGTTTATTTAGCTTGTGATACAGTCTATAGAGAGGAGAGTTGCACTAGAgagaaacatgtttttaatgtcAACCTCACATCCCACTGTGATATTGTACATGGGTTAAACTTtgatgtactgtgtgtgtgtgtgcgtgtgtctgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcggggctgctttttgtgttttattgatgATCTATTATTCCGAGTATTCTGCAGTGGATATTTGTCGTGTTTCACGACAGCTTTGGTAAATCTGTCATGTTTTTAATGGAGGGTACTCctgtgctgctgttgttggTGGCTGTAATAGCATAATAGCATCAATCGCCTTCCtcctggtgggggggggggggattaaaAGAAAGCATTTGCaatttttaaattcaaaattttaTTATACAGTTAAGTCTgtaacaaaacatattttaacgTAACCGTAGATTCTATTAATGCTTTATAGTTAGAGTATAAAGCGTAATTATGGTAATGCCCCAACCAGCAACATGCATTTCCAGTCCCCACTTCAAGGTACTGCTGTTTAGACCTTTGTCTCCAAATACTTTGTCACACACCACTTGTTGATTTGATGTCTGTGCACAGGTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56331 lncRNA upstream 151305 26695632 ~ 26764737 (+) False anks1ab
TU56337 lncRNA upstream 206465 26707269 ~ 26709577 (+) True G41865
TU56311 lncRNA upstream 209309 26695632 ~ 26706733 (+) True anks1ab
TU56295 lncRNA upstream 370943 26542507 ~ 26545099 (+) True G41850
TU56281 lncRNA upstream 511140 26400453 ~ 26404902 (+) True LOC120557964
XR_005639067.1 lncRNA downstream 231445 27194172 ~ 27209333 (+) True LOC120558213
XR_005639068.1 lncRNA downstream 231445 27194172 ~ 27209333 (+) False LOC120558213
TU56528 lncRNA downstream 262556 27225283 ~ 27227610 (+) True G42020
TU56541 lncRNA downstream 379872 27342599 ~ 27342850 (+) True G42031
TU56575 lncRNA downstream 457060 27419787 ~ 27432384 (+) True G42061
XM_039797746.1 mRNA upstream 100640 26790484 ~ 26815402 (+) True slc2a1b
XM_039798304.1 mRNA upstream 216801 26653260 ~ 26699241 (+) False anks1ab
XM_039798064.1 mRNA downstream 20533 26983260 ~ 27008409 (+) True lrig2
XM_039796911.1 mRNA downstream 48671 27011398 ~ 27151158 (+) False LOC120556972
XM_039796910.1 mRNA downstream 48676 27011403 ~ 27153146 (+) True LOC120556972
XM_039796912.1 mRNA downstream 196010 27158737 ~ 27169707 (+) True im:7151449
XM_039796913.1 mRNA downstream 196010 27158737 ~ 27169707 (+) False im:7151449
XR_005639013.1 other upstream 217471 26653260 ~ 26698571 (+) False anks1ab
TU56292 other upstream 367243 26542507 ~ 26548799 (+) False G41850
TU56293 other upstream 367243 26542507 ~ 26548799 (+) False G41850
TU56251 other upstream 642727 26268602 ~ 26273315 (+) True G41825
TU55525 other upstream 3155091 23757758 ~ 23760951 (+) False cbfa2t2
TU57106 other downstream 2277686 29240413 ~ 29242253 (+) True G42449
TU57834 other downstream 5497405 32460132 ~ 32460863 (+) True G43045
TU57843 other downstream 5508068 32470795 ~ 32471605 (+) True G43051
TU58042 other downstream 6075207 33037934 ~ 33041264 (+) False LOC120556790
TU58122 other downstream 6225011 33187738 ~ 33212318 (+) True G43277

Expression Profile