RNA id: XM_039797559.1


Basic Information

Item Value
RNA id XM_039797559.1
length 5331
RNA type mRNA
GC content 0.43
exon number 13
gene id slc2a9l2
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 10101729 ~ 10201751 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACAGCTGCCAGCCAGTAGGTTCAACAATATAATTAATGTGAAGCCAAGGGAGAATAAAGCAGCCATTGATCAGTGAAAAAGCTGCATGAGGAGAGGGAAGTTTTTTGGGGATTGAAGACCAAGCTCTTGTGCTGCTTTTATGTAACACCCATTATAGTGTGTGTGCAAAAGCTCCACCAGGCGCAGaaactttttcttcttcttcgtctagAATGCCGTTGTTGCTCCATTTATCAGGAAATGAACATAAATGCTGCATGGAATGCTGCAGTACAATGGAGCATGGGCACGCTGGAAGTGCACTGTCCATTGTTCTTATAATTCTTATGGTGGGAGAAACAGACATTTTCTTCCAATGCAGTATCTGTATGTTCGGATTTTAAACTTTGACTGAGTGCCATGATGTAGACTACTACACTACTCAAGGTAGCTGAAACGTTAAGATGGACAAACCAAAGAATGACCACCCAGCAGATCACAAGcagccaatcacagcctgtCTGTTGAGCGCAGCCTTCTTCGGTGCCCTTGGGTCGTCTTTCATTTACGGCTACAACCTCTCCGTGGTCAATGCTCCTGCTTTGTTCATTAAAGCTTTCTACAATACCACATGGATTGAGAGATATGGGGAGCCTCTTGCAGCAGAGACAGCCACCCTCCTCTGGTCCGTCACGGTGTCCATATTTGCTATCGGTGGCCTTCTTGGAGCTCTCGCTGTCTCTATAATCCTCAAAGTACTGGGAAGAAAGGGAACCTTGCTGCTGAATAACAGCTTTGCTCTAATAGCTGCTCTGCTGCTGACTCTGGGTGACAGGGCCAAATCTTTTGAGATGCTCATCATTGGCCGGCTCATAATCGGGGTAAACTCCGgcatAGCTCTCAGCGCCCTCCCCATGTACCTTGGAGAAATTACGCCAAGACATATCCGAGGTTCAATAGGCCAGTTCAACTCCATCCTGATCTGCTTGGGAGTGTTCACGGGACAAGTGCTGGGGCTGCCCGAGCTGCTGGGTCAGGAATCCAGGTGGAGCTACCTGTTTTCCTTCCTGGCGTTGCCGGCAATACTGCAGCTGTGTGTGCTGCCCTTCCTCCCCGAGAGTCCTCGCTACCTGCTGATAGAGAGGAGGGATGAGGCTGGAGCAGAAAGAGcctTTCAGAGGTTTTTGGGAAAGAAAGATGTGTCCCAGGAGCTGGAGGAGGTTCACGCGGAGGCTCGGGCTCAGGAGAACCAGCACATGGCCTCAGTGTTACAGCTGCTGAGGAGCCCAGCTGTTCGCTGGCAgctcatcaccatcatcataaCCATGGCCTGCTATCAGCTCTGTGGCCTCAATGCTatCTGGTACTACACCAATGGGATCCTTCGGGATGCAGGCTTTCCCGAAAACATTATCCCCTACATCACACTGACCACTGGGGCCATAGAGACTTTGGCTGCCATCATCTCGGGCTTGGTGATTGAACGAATCGGGAGGAGGCCCCTCCTCATCTTTGGGTTCTCTGCCATGGCCGTATTCTTCAGCCTACTCACAGTGTTCCTCAATTTCCAGGACAGGCTGTCATGGATGCCCTACCTCAGTTACATCTCTATACTGGCTGTGATAGCGTCCTTTTGCTCTGGTCCAGGTGGCATCCCTTTTGTTCTGACTGGGGAACTGTTTGAACAATCCTACCGACCTGCCGCCTTCATGATTGCTGGCACAGTTAACTGGCTGGCCAACTTTGCTGTGGGTCTCCTGTTTCCATTTATTCAAgAGACGTTGCAGTCCTTTGCCTTCCTGGTGTTTGTGGTGGTCTGCGTCTTGGGAGCTATCTACCTCTTTGTCGTCCTACCTGAgaccaaaaataaaacatttatggACATCAGTAAAAGCTTTGCCAAGATCAACAAAATCCCTGCCCCCTCGCCCAGCAATGAAATGGAGCTGGTTCTGTCCACTAAGCCTGACATGAATGGAATAGTCCAAGATATTGTTAAAATGGAGAGTTCCTTCTAGCTGAACAATCTATACTAATGGTGGAGAAGCAGGGTTGAAACATAAAGTGAaagtatttgttgtttgtacatATTATTTAATGCCTGTGGTCAATTACATGAAAACCAATGATTTAGGTTCAATGTATTGTGGTATTTTATAGATGTTTTGTATGACTGTacagcagttatttgtttactGTTTGTTGCTTATTATAATGAAACAAACCAACTAGATTTTATGTTCTGTCTACaagtcaatatacagtataaaacaaTCAAATTGCAGAAACCCTATATTGTTGAGGTCTTTCAACAGTTACAAAGGGGATACTAATGTCTGAAGGCGACTTGCATAAAATATTGTACATACTATTaaaccttaaacctgcattaaccATCAGCCATTTGAGGTGACGAAAACTTGCGGTCAACACAACACTGAACTATTATCATCTCATGGAGTATAGAGTAGAGGTATGGCTAACATGTTAGCAGACAttggcttatttacacatccagcagatttCATCTCAGCTTCATAATGAGAGGGGCAGACGTGTGTCTGAGGAGAGACATATTTTGAAGGATTATAACGCTAATGCTGATGTCTTGGTTAACTTCCCAATATAgacaacaagagagagagaacccaGAGAGCAGTGCAGTAAAGCTTATGTGGACAATTGTTTTGAAGCTTCTTAAAATCTGAAAGGAGCCAAGGCTATTTCTCACCAGATGGTGGGAGCCAGCCGAGGATCAGTCAGCGGTGCTCTGAACAGAGGCAGACATGCATGCCATTGGACAGCAGTCACAGTTTGCTCCATAGTAGGGTGTACTAAAAATTTCAGAGTCAGGCTAACACCCCACCCTCTCATTCAGCcatgcacagacacagatacaaagAGTGTCATGAGATGATAAAGGGGTGTCCATGTATTCAAATGGCATTGTTGAAGAGAGGTGGGGAAATTTCAATTTCATGTCCTGAGTTTCAGTTTAATTCCTGTCCTGAGTTCCACATATTGCATTTGTCCAACTGGACAGCAGGCAGGGAAGTGAGGAGAATAATAATTGGAAGTGTTGTCTCTCATAACTCTGTTCCAGCATGTTACTCTCGAGGTGTTATACTCTCAACATTAGTTAGTGGGTAATTGGCAGAAACATATGCTGGTGATTGCTGGTGGGAGAGTAATTATGAGATCATAGCAGCAAAGACATACATACTACATGTTTAATTAGATGCACTGTAGGGTAATGCTGTGTGTGATAAAATACTGTTTGTCCAAACTCTTCGATATCCTCTCAGGATATGTTAATCATCTTCCATCATGCAAAGTAAGAAGTGGACGcagctagtctggctatcaccagaccaagctcaatatTTTTATTAGTCTGGTGAGTCTGTCTGTTACCCACACTAATCGGCTGAAGGAGATAGGGTcttacgtttcttcattcagatccatttgtgatccattctgaataaacaaactcGGAATtatagttgagaacgtcagttataacggcccacgtattaaaaaattgtCGTGTTTAAaacgggctcgggctcataattacagttaatgtgtcgggccgggccgtGCTCGGACAAAACGTGCGCAGGCTCGGATAGGGTCGGGTTTGATTTTATGGGCCAGATCTTAGCTCACCTTCCAGCACACCTTCCAGCCCTTCTGTgtttacaaaatataaaaaatcacAACCTGTACcagatttctttaaaccaaggtTGCAagtgttcattttatttttagaagTGGTTAACAGCCCTCCTTTGAAACACTGAACAGTTACTGGTTCTGTCCCGTATCTCTGCCGGCCTAATTCCACCTTTACCCAGTGAGGATGCCCTTAATGAGTGCGTCTGAGTAGGCCACTGGAgctaaagaaagaaataaatatTGTCTTTGTGATTTCTCATCTCACACAGCCATTATCTGTTTCATATCACCCGAGTTTACTCATTGATATTAAACAGTGGATTATTGGTCCAAATCATAGAATGTAGGTCCAAATATGGTGGCTCAGTCAATTCAGTGAAAGCTGCTCACAgagtgcatacacacacacaacaaaaaaaaacaccttgcaGTTTTATGCCTCCTCCAATCAtcagtcaagttgcagtttacgTCATAATATATGTAGTGTAGACTTTAAAGGAATTTAATAAGATGTATTAAGAGTATTTTTTGGTGAAACAtggatgcttcacacacatcttcaatCCAGCAGCACATAATATCTATACAATCCCCACAGTTGAAAGGTGGGCACCCAATATTagtgtcaccaattcagtatcTAACCAAATGTGAAATATGGTTATAATTTCCCCTTCTGTTCCTGTAGGGAACCACCGAAGTGGGagaagttacatagtgttgctttaaggtgTTGAACAATGGCCAGCAAAGCATTTTTTGCAGAACACAATGTCACAGTTAAGTAGTTATTTGACCTTTTGGGTACAACATTTCATCGCTTCTTCATTCTTTCATATTTGTGTCAAATGTTGTCATAATTACAACATGAATTATTACGTTAGGGCCACAAATGTGTTACGTGAGGTTGCAGTGACCTAGCCCTTTGACCCCCAAATTCATTGGTTTCACAGTTCATCCTTGATTCCAATATATGTTTGTGCCAAATTTGAAGACATTGTCTCCAGGTGTTCCTAAGATATCATGTTCACTAGAATGGGATGATGGACTTGAGGTGTACTCTAATGATCTCGACCTTTGGCCACCAAACCCAGCCACAGCTGTCACCGCCGCAGAGGCAtaaaatcaagaaaaaaaactatttcctACTTCGGTGGCCATAACCCATCAGCAGTAGTGTCTTTTTCTGATGTGACCTTCAGTTCAGACTACAGCTGTGTTTCCTGGAGACTTGAGGTTATCAACAGTATTCTCATGATTTGCAGTGAAAGTGCTTTACTCTGCAGGTGTGTCACTTCAGTGTTGAATGGGCCATTTTGTGCTTTATTTTTCCTCAACATACTCTGCCTCAGCATGTAAACTTGAATACAGGTGTCTTTGCTCTCTTCATTATGCAGAAGGCTGCCTGTCTGAGTAGGTCCCACAGAAGAGTCAGAATATGCAAAGGCTGTTTTGTGCCTTTTCCGAGTCATCAAAACCATAAACTTTATGCTACATAAACTAAAAGCATTTCATCATGCAGTCTTCAGGATGCACATTTAATGCAATTCATACAAACATCAGCATGCTTTCttcagtatgtttacatgcaaactaATGTCACAGCTGTGCCTCCTTTTCATGTTTTGAATGGATACaatgtaacattaaaagaaaaactggcaA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49856 lncRNA downstream 41322 10059804 ~ 10060407 (-) True G37165
TU49850 lncRNA downstream 57294 10044168 ~ 10044435 (-) True G37159
TU49849 lncRNA downstream 57907 10042247 ~ 10043822 (-) True G37158
TU49836 lncRNA downstream 85005 10015379 ~ 10016724 (-) True G37146
TU49834 lncRNA downstream 86676 10013727 ~ 10015053 (-) True G37145
TU50000 lncRNA upstream 51417 10252158 ~ 10252553 (-) True G37260
TU49993 lncRNA upstream 56518 10257259 ~ 10260360 (-) True G37258
TU49994 lncRNA upstream 56518 10257259 ~ 10260360 (-) False G37258
TU49998 lncRNA upstream 56518 10257259 ~ 10270411 (-) False G37258
TU49974 lncRNA upstream 92357 10293098 ~ 10302511 (-) True G37245
XM_039796491.1 mRNA downstream 88010 10007330 ~ 10013719 (-) True zbtb49
XM_039796492.1 mRNA downstream 88112 10007330 ~ 10013617 (-) False zbtb49
XM_039796489.1 mRNA downstream 95556 9998996 ~ 10006173 (-) False LOC120556768
XM_039796490.1 mRNA downstream 95556 9998996 ~ 10006173 (-) True LOC120556768
XM_039799171.1 mRNA downstream 105974 9967082 ~ 9995755 (-) True LOC120558214
XM_039797563.1 mRNA upstream 4245 10204986 ~ 10216132 (-) True wdr1
XM_039796750.1 mRNA upstream 93794 10294535 ~ 10333383 (-) False cast
XM_039796754.1 mRNA upstream 93794 10294535 ~ 10333382 (-) False cast
XM_039796766.1 mRNA upstream 93794 10294535 ~ 10333381 (-) False cast
XM_039796770.1 mRNA upstream 93794 10294535 ~ 10333380 (-) False cast
XR_005638890.1 other downstream 95556 9998997 ~ 10006173 (-) False LOC120556768
TU49655 other downstream 706159 9394739 ~ 9395570 (-) True G37045
XR_005639051.1 other downstream 1068062 8907782 ~ 9033667 (-) True LOC120558079
TU49573 other downstream 1068157 8906460 ~ 9033572 (-) False LOC120558079
XR_005639075.1 other upstream 291549 10492290 ~ 10492357 (-) True LOC120558246
XR_005639079.1 other upstream 293462 10494203 ~ 10494322 (-) True LOC120558250
TU50114 other upstream 334213 10534954 ~ 10536353 (-) False tpgs2
TU50209 other upstream 731668 10932409 ~ 10943628 (-) False fam219aa
TU50210 other upstream 731668 10932409 ~ 10943628 (-) False fam219aa

Expression Profile