RNA id: TCONS_00007177


Basic Information

Item Value
RNA id TCONS_00007177
length 504
RNA type mRNA
GC content 0.46
exon number 4
gene id XLOC_003706
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 42730639 ~ 42732440 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCGTCTGTCCGTCAGCAagatgcagaaacacacacacacagacgctctTCAGTGACGCTGAGATCACCACCTGCCGAGATGGTTTGCATTCTCACTGTGTTTGCATGCATTTCTTCAGCTCTTATTGTCACCGGACACATGGCACTGAATGACAACCGTGATGTCGTTAACGTGGCAAACTATGCTATGAACTTCCACAACCGCATGAGCAACTACACTTATGCCTTTAAAGTGGTGAATATCTTATCAGATGCTGCTCAGCTTTATCCTCCTGCACGGGTGAAATACACCATACAGATTGAAGCAGCACAGACGGTCTGCAGGAATCAAGAGAATGTCAATCTCACACAATGTGCTGTGCAGGATAACGCTGAGACTATGACCTGCTCTTTCATTGTCATTGCAGTGCCAGGAAATGATTATATCCCCAAACGTGTGCTGTCACATCAGTGTGTCTGAATGGACCTGCGGTCAATAATAcatgcttgcttgcttgcttatgC

Function

GO:

id name namespace
GO:0005615 extracellular space cellular_component
GO:0004869 cysteine-type endopeptidase inhibitor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081022-170 Predicted to enable cysteine-type endopeptidase inhibitor activity. Predicted to be active in extracellular space.

Ensembl:

ensembl_id ENSDART00000165297

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007166 lncRNA upstream 157657 42572242 ~ 42572982 (+) True XLOC_003700
TCONS_00007156 lncRNA upstream 312265 42305089 ~ 42418374 (+) True XLOC_003693
TCONS_00008428 lncRNA upstream 598732 42127415 ~ 42131907 (+) True XLOC_003692
TCONS_00008427 lncRNA upstream 632348 42098047 ~ 42098291 (+) True XLOC_003691
TCONS_00008426 lncRNA upstream 660975 42057856 ~ 42069664 (+) True XLOC_003689
TCONS_00008429 lncRNA downstream 61138 42793578 ~ 42798751 (+) True XLOC_003705
TCONS_00008687 lncRNA downstream 107410 42839850 ~ 42844948 (+) False XLOC_003707
TCONS_00008688 lncRNA downstream 107414 42839854 ~ 42883298 (+) False XLOC_003707
TCONS_00008689 lncRNA downstream 107416 42839856 ~ 42841508 (+) False XLOC_003707
TCONS_00008690 lncRNA downstream 107426 42839866 ~ 42844948 (+) False XLOC_003707
TCONS_00007174 mRNA upstream 7981 42641404 ~ 42722658 (+) False XLOC_003704
TCONS_00007175 mRNA upstream 11280 42641469 ~ 42719359 (+) True XLOC_003704
TCONS_00007170 mRNA upstream 95199 42600731 ~ 42635440 (+) False XLOC_003702
TCONS_00007178 mRNA downstream 33523 42765963 ~ 42815398 (+) False XLOC_003705
TCONS_00007179 mRNA downstream 33657 42766097 ~ 42819730 (+) False XLOC_003705
TCONS_00007181 mRNA downstream 310731 43043171 ~ 43048021 (+) True XLOC_003708
TCONS_00007184 mRNA downstream 381668 43114108 ~ 43116249 (+) True XLOC_003711
TCONS_00007186 mRNA downstream 630635 43363075 ~ 43368382 (+) True XLOC_003713
TCONS_00007172 other upstream 105152 42625371 ~ 42625487 (+) True XLOC_003703
TCONS_00007149 other upstream 1265403 41465107 ~ 41465236 (+) True XLOC_003680
TCONS_00007137 other upstream 1572711 41110669 ~ 41157928 (+) False XLOC_003675
TCONS_00007139 other upstream 1572713 41135609 ~ 41157926 (+) True XLOC_003675
TCONS_00007131 other upstream 1841345 40889180 ~ 40889294 (+) True XLOC_003670
TCONS_00007182 other downstream 312386 43044826 ~ 43044949 (+) True XLOC_003709
TCONS_00007198 other downstream 1292322 44024762 ~ 44024878 (+) True XLOC_003725
TCONS_00007203 other downstream 1592321 44324761 ~ 44326292 (+) False XLOC_003732
TCONS_00007204 other downstream 1592321 44324761 ~ 44334911 (+) False XLOC_003732
TCONS_00007205 other downstream 1596334 44328774 ~ 44335322 (+) True XLOC_003732

Expression Profile

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