RNA id: XM_039797563.1


Basic Information

Item Value
RNA id XM_039797563.1
length 2519
RNA type mRNA
GC content 0.47
exon number 15
gene id wdr1
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 10204986 ~ 10216132 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGACAGGCAGAAGGAGAGCTGCTCTCGCTTCCGTGTTTGTGTGATCAGGGAGTGCACAGCCGGAGGAGCTTAACTGTTTCATTCATTTGTAAAGAGTAACGTTAAGAAAGTGGCCAGCAGGGAAAATGTCGCTTGAACTGAAACATGTATTCGCAAGTCTCCCACAGATGGAGAGGGGAGTTGCAAAAGTGATTGGCGGTGATCCCAAAGGCAACAACTTCCTGTATACCAATGGGAAGTGTGTCATCATCCGGAACATTGAAAATCCGGCTATAGCAGACATTTACACCGAACATGCCCATGCAGTTACTGTTGCCAAGTATGCCCCCAGTGGATACTACATTGCATCCGGAGACGCGTCAGGAAAGATCCGTATCTGGGACACCACCCAGAAGGAGCACATTCTCAAGTACGAGTACACCCCTATTTCAGGCAAGATCAAGGACATTGCATGGACCGAGGATAGCAAGAGGATTGCTGTCGTTGGGGACGGACGAGAGAAGTTTGGAGCGGTGTTCCTGTGGGACTCTGGCTCCTCAGTGGGGGAAGTTTCCGGCCACGCCAAATTAATCAACAGTGTTGACATAAGGCAGAAACGCCCTTACCGCCTTGCCACTGCCAGTGATGACACCTGTGGGTCCTTCTTCGAGGGGCCTCccttcaagttcaagttcacaTTACGAGATCACAGCCAGTTTGTCAACTGTGTTCGTTTCTCTCCAGATGGAAGTCGGTTTGTCACAGCTGGCGCTGATGGCCAGATATTTGTCTATGATGGAACGAATGGTGAGCGTGTTTGCTCACTGGGTGGAGAGAAGGCCCACAAAGGAGGAGTATATGCTGTCAGCTGGAGCCCTGACAGTTCCCAACTGATCTCTGCCTCAGGGGACAAGACGGTGAAACTCTGGGATGTTGGTGCAGGTACGGCCGTCACCACCTTCAACCTGGGCACTGATGTGACAGACCAGCAGCTGGGCTGCCTGTGGCAGAAAGACCACCTCCTCACCATCTCCTTGTCGGGATACATCAACTACCTGGACAAGAACAACCCTGGCCGGCCCATACGCACCATCAAGGGTCACAGCAAATCCATCCAATGTCTGACAGTTCACAAAAAGGATGGGCGGCCATATATCTACTCAGGGAGTCACGATGGACACATTAATTACTGGGATGCAGAAACCGGAGAGAACGACTGCTTCTCGGGGAAGGGCCACAGCAACCAGGTGAGCAAGATGGTGACCGACGAAGCCAACGAGCTGGTGACATGCAGCATGGATGATACACTGCGCTACACCAACATCAACAAGACGGAGTACAGTGCCTCTGATGTGGTGAAGATGGATTTCCAGcctaaaagtgtgtctgtagcAGCAGGAGGGCTGTCCCTGGCTGTGTGCATTGGGCAGATTGTCTTGCTGAAAGATAAGAAGAAAGTCTTCACATTGGACAATCTTGACTATGAACCAGAGGTTGGAGCTATCCACCCTGGGGGCACCACTGCTGTTGTGGGCGGAGCAgATGGGAAAATCCATCTGTACTCCATTCAGGGCAACACTCTGAAGGACCAGGGTAAAACTATCGAGGCTAAAGGGGCGATCACAGACATGGCCTACTCTAATGATGGAGCCTATCTCGCTGCCATAGATGATAAGAAAGTTGCCACAACTTTTACTGTGGCTGACGGCTACTCGGTCAAAGATGAGTTTTACGGACACCATGCCAGAACTGTAACTTTGGCCTGGTCACCTGACAATGAGCACTTTGCGACTAGTGGGATGGACATGATGGTGTTTATCTGGACAATTGGTGATCCAGACAACAGGATTAAGCTGGCAGACACTCACCGGTTGCACCATGTTAGTGGCCTGGCCTGGGTCAATGAGCACACTCTAGTCACCACCTCCCATGATGCCAGCATCAAGCAGTGGACTGTTAAATACTGAGCTGCAAGCAGACAAACATCCACATCTCCAGGGACAAGGACTACTGTAGAATTCAATCTTTccttctgttttcattttttttttttttttttttaaactgtattttCACTATCTATACGGTGTTCTATGCGGTCTGTAAACATCTGAAATTGTGAATTGATATGGCTGGGGAAAGCTCCCCTAAAAAATAATCCAAGACACGTCTCTTTCATGCAGATAACCTCAACTTACACGGAGacaaatatttgaaatatatgATGTAACCACGAGTTGTTTTACATCTCTTTGAGCTTGATGGACCCACAGTAATATTTGTAAGCTCAACATTCCATAGGTAATAGCTTTCACTCAGTTTAAACCAAAATTCTTGTCTGTGGTTTGGCTCAATGCATCCTAACTTAATGGATAAACTAAAAGCgagtttcttctttttttttttttaaatcaacaatCATGTTTGAAAGAAATTAAACCTTTTGGTTTTAAGGGGTTGGGTGTTTTGCTTTGTCTTAGGTTTCATACTTTTATGTTTCACAACTCTTCCTGTTGGACTCGGGAGCAATAATGGGAACT

Function

GO: NA

KEGG:

id description
K24736 WDR1, AIP1; WD repeat-containing protein 1 (actin-interacting protein 1)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49856 lncRNA downstream 144579 10059804 ~ 10060407 (-) True G37165
TU49850 lncRNA downstream 160551 10044168 ~ 10044435 (-) True G37159
TU49849 lncRNA downstream 161164 10042247 ~ 10043822 (-) True G37158
TU49836 lncRNA downstream 188262 10015379 ~ 10016724 (-) True G37146
TU49834 lncRNA downstream 189933 10013727 ~ 10015053 (-) True G37145
TU50000 lncRNA upstream 36026 10252158 ~ 10252553 (-) True G37260
TU49993 lncRNA upstream 41127 10257259 ~ 10260360 (-) True G37258
TU49994 lncRNA upstream 41127 10257259 ~ 10260360 (-) False G37258
TU49998 lncRNA upstream 41127 10257259 ~ 10270411 (-) False G37258
TU49974 lncRNA upstream 76966 10293098 ~ 10302511 (-) True G37245
XM_039797560.1 mRNA downstream 3235 10101729 ~ 10201751 (-) False slc2a9l2
XM_039797555.1 mRNA downstream 4243 10101729 ~ 10200743 (-) True slc2a9l2
XM_039797561.1 mRNA downstream 4244 10101729 ~ 10200742 (-) False slc2a9l2
XM_039797559.1 mRNA downstream 4245 10101729 ~ 10200741 (-) False slc2a9l2
XM_039797557.1 mRNA downstream 8344 10101729 ~ 10196642 (-) False slc2a9l2
XM_039796750.1 mRNA upstream 78403 10294535 ~ 10333383 (-) False cast
XM_039796754.1 mRNA upstream 78403 10294535 ~ 10333382 (-) False cast
XM_039796766.1 mRNA upstream 78403 10294535 ~ 10333381 (-) False cast
XM_039796770.1 mRNA upstream 78403 10294535 ~ 10333380 (-) False cast
XM_039796779.1 mRNA upstream 78403 10294535 ~ 10333379 (-) False cast
XR_005638890.1 other downstream 198813 9998997 ~ 10006173 (-) False LOC120556768
TU49655 other downstream 809416 9394739 ~ 9395570 (-) True G37045
XR_005639051.1 other downstream 1171319 8907782 ~ 9033667 (-) True LOC120558079
TU49573 other downstream 1171414 8906460 ~ 9033572 (-) False LOC120558079
XR_005639075.1 other upstream 276158 10492290 ~ 10492357 (-) True LOC120558246
XR_005639079.1 other upstream 278071 10494203 ~ 10494322 (-) True LOC120558250
TU50114 other upstream 318822 10534954 ~ 10536353 (-) False tpgs2
TU50209 other upstream 716277 10932409 ~ 10943628 (-) False fam219aa
TU50210 other upstream 716277 10932409 ~ 10943628 (-) False fam219aa

Expression Profile