RNA id: XM_039797586.1


Basic Information

Item Value
RNA id XM_039797586.1
length 4250
RNA type mRNA
GC content 0.48
exon number 20
gene id zmynd8
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 7709966 ~ 7727318 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGCAGTGAGTCGGACAGCTTTGAGAGCCGTGGCTGTGCTCTGAGCAGGGTGAGGGCTGACAGGGCTGTCCTCCATGTTTTAATAAGCATTGACATATCACACAGAGTTTGTAGCCATGCATCCACAGAGTGTGGCAGAGGAAGCGGAGACAACTGAGATTACAACAGAAGGAATGGAGATCTCAACACGATCCAAAGTTTCAGACACGGGGTCGACAGAACGGATGACCCAAAAACGAAAGATACCAAGTCCCTCTCACTCATCTAATGGTCACTCCTCTGCTGAAACGTCCCCCTGCCCagtgaaaaagaagaagaaaccagGTGCTGTTAGCAGCAGCAAAGACCAgTCAGAACTAAGACATGGTCCCTTTTACTATGTGAAGCAGCCAGCACTCACCACAGACCCTGTTGATGTTGTACCGCAGGACGGCAGGAATGACTTCTACTGCTGGCTGTGCCACCGCGAGGGCCAGGTGCTCTGCTGTGAGCTCTGCCCCAGGGTATACCACGCCAAGTGCCTCAAACTACCAGCCGAGCCCGAGGGCGACTGGTTCTGTCCGGAGTGTGAGAAAATAACAGTTGCTGAGTGTATAGAGACTCAGAGCAAAGCCATGATGATGCTAACTATAGAGCAGCTGTCTTACCTACTAAAGTTTGCCCTTCAGAAGATGAAACAGCCAGGTACCGAACCCTTCCAGAAACCTGTCTCTCTTGAACAGCATCCAGATTATGCAGAGTACATATTTCACCCTATGGATCTTTGCACACTTGAGAAGaatattaaaaagaaaatgtatggctGCACAGAGGCCTTCTTGGCAGATGCAAAATGGATTTTGCACAACTGTATTATATACAATGGAGGCAATCACAAACTCACAGCTACTGCTAAAGTGATAGTAAAAATCTGTGAACATGAGATGAACGAGATTGAAGTTTGTCCAGAGTGTTATCTGTCTGCTTGCCAAAAGAGAGACAACTGGTTCTGTGAGCCTTGTAGTAACCCACACCCTCTAGTGTGGGCCAAACTGAAAGGATTTCCATTCTGGCCTGCTAAAGCTCTGCGGGACAAAGATGGACAAGTGGATGCTCGCTTTTTTGGTCAGCATGACAGGGCTTGGGTTCCTTTAAACAATTGCTACCTCATGTCCAAAGAGATTCCTTTCTCTGTGAAGAAGACCAAGAGCATCTTCAACAGTGCCATGCAAGAGATGGAGGTCTATGTGGAGAACATGAGAAAGAAGTTTGGAGTATTTAACTATGCCCCCTTCAGGACCCCCTACACTCCTGACAACAACTTCCAGATGCTGCTGGATCCCTCCAACCCCTCTTCCACCCTGATCAAACCTGAGAAACAGGAGAAGATTAAGCTGAGCTTTGATATGACTGCATCACCCAAGATCCCTTTGACCAGGACCATGCTGTCTGGGGCTGGGGTGGGAGGGAGCACAGCAGGCCGACGGCTCCCTCTCAGTGAAATGCCTCGCTCCCCCATGAGCACCAACTCCTCTGCCCATACTGGTTCGGATGGGGAACATGACACAGCTGACAAGTCCCAGACAAAAGCTCCAAACAGccagtacagtacaggagagGAGTCCATGGACTGTACAGCATCGCCTGCCCATCCTCGACCTTGTCCTGCAGGCAGTTCCTTGGAGAGCCCTAAACCATTCCACTCTCAAGCTCCTGGTTCCCACAAGCAGGAGAAGACACCACCGACAGGAAGCATTCTGAACCTCAATCTAGATCGGAGTAAAGCAGAAATGGACCTTAAGGAGCTTAGTGAAACGGTTCAGCAGAAACAAGGAGCCACACCAGTCCTCACCTCTCCAAAAAGACAGATCAAGAGCCGTTTCCAGCTGAACTTGGACAAAACCATTGAGAGTTGCAAGGCACAGTTGGGTATAGATGAGATCTCTGTTGATGTGTATAAAGGTGTGGAACACAGTGACTCAGAAGACTCTGATAAATCTGACTCCAGTGACAGTGAGTATGCCAGTGATGAGGAGCAAAAGACCAAGGATGGCCGGGATGCAGCACCCAATGATGAAGCCCAGAAGGAGCCTACCAAAAGTAAAGTCAAAGACCAACCTTCCGTGAGCCAAGATAAGGAGGGTAAAGCTGATTCGCTCGTGGCATCCGAGACTGCAGCAGGCGACGCCACTGCAACAGCATCAAATGCTTCACCTAAAGGGAAAATGAGCACAGATTCGGAAAAAGAGAGTCCAGAGCAGACCAAAGCACCTCCATCATCACCTGGTCTCAGGGAGAAGGCTCAAGTGAAAGAAGAGGCAAAGCAGCCTGTGCCAGTGGAGGACTCTGACTCAGAGAGAGAGCTGGTTATTGACCTCGGAGAGGAACAGGGAGGCAAgaacaggaggaggagcaggaaagACAACACCACTGTTAAAGAGTCATCTGCTGGTAAACCTGAAGGTAAAGCCCTGACCCCATCAACAATCCCGTCTCAAAACAGTACAGCTCCGTCCACACCCTCTAGTGTTTCCACACAGTCCCCTATGGCCATTCCTGTCACCATGGTCTCCTTCACTACTCCCTCACCCGCAACCATAAGCCTTGCAACTGTGTCCAGTGCCACCGCAACACCcccctcttcatcctcctcagcCTCCACCACACCAGCTTTGAAAAAACAGCGTCCTCTGCTGCCCAGAGAGACGGTGCCGGTGGTGCAGAGAGCTGTGGTGTGGAATCCCACTGCCAAGTTTCAGACCTCCTCTCAGAAGTGGCACATGCAGAAGGTGCAGCGTCAGCAACAGAACCAGCAACCTGTGGCAACCACGCAGGTGCAGGTGTCGTCGCCCAGGCAAGGCCAGGGTCAAGCGCTGACCCAGACACAAGCCACTGGGAATGGCTCGACAGCAGGATCCTCATCGTCATCACAGCAGTCTTCACAAAGCACACGCTATCAGACCAGACAGGCTGTTAAAGCTGTTCAACAAAAAGACACATCCACGTCGGCTGTCACCCTGGTATCCAGTAGTCCTGCTTCTGTTGCCATGATTGCAGCATCAAGTTTAGGCACAGCTGCTACATCTTCACCAGTGGCAACCGACCTGTATATCCCCACTGCCTCAGCGGATGCAGCTGCAGACATTGCCAAGTACACAAATAAAATAATGGATGCAATCAAAGGTACAATGACTGAAATTTACAATGACCTTTCTAAGAGTACTTCAGGAAATACAATAGCAGAGATAAGACGACTGAGAATCGAAATAGAAAAATTACAGTGGCTGCATCAACAAGAGTTGTCAGAAATGAAGCACAATCTTGAGCTGACAATGGCAGAGATGAGGCAAAGTCTggaacaggagagagagaggttggtGACTGAGGTGAAGAAACAGATGGAGCTGGAGAAGCAGCAAGCAGTGGATGAGACAAAGAAGAAACAGTGGTGTGCTAACTGCAGGAAAGAGGCCATCTTCTACTGCTGCTGGAACACCAGCTACTGTGATTACCCCTGTCAGCAAGCCCACTGGCCAGAACACATGAAGTCCTGCACTCAATCAGCCACAGCCCCGCAGCAAGAACCTGAGGCTGAGTCGACAGCAGACCTCCCACACAAAGGTTTAGGGCAGACTAGCAGTGGCCCGAACTCTCTGAGAGACACGCCGGTCTCTGCACCATCAGACAAAGACTGTGAGATGGAGAAGAGCACTGACAATGTTGCTGTGACTTTGTCCTAAACGAGCTTACCATacttgaaaatgtaaaaaaaaattccactataAGGATATGTCTATGTACATTTTTCTGTTAGCTGCATCACAGCAGCTGTTAAGGGAGCAAtctaaattattttaatttatatattttgtttgcttttcaGGGCTCACATACTGCCCCCAGTggtctttacattttaaatgtggaAACAAGACTGACAGCAGATAGTTAGTAACCACTAGAGGgggcagtttaaaaaaatgtatactgCATATTCATGCACTCCATTGCAGTCTATAGCTGTCAGTATACAGATCTTAAGAGCATGCCTGAGTGtcacaaaacatacacatagTGTAAAGGACAACAGTTAAACAGTTTAAGACTGCAAAAATGTAACCCATGCTAATGGACCACCCAGTTTTGGTTAGACGGTTGACAGAAATGACTGTAAATTCCTTATTTTGTATTATATgttaatttatttgttattcTAATGTTGCCTGCTGTAtactgcaaaaaaacaaatacaaacattttaaacaagctga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49116 lncRNA upstream 46093 7662944 ~ 7663874 (+) True G36638
TU49087 lncRNA upstream 162932 7543986 ~ 7547035 (+) False G36616
TU49086 lncRNA upstream 163917 7543986 ~ 7546050 (+) True G36616
TU49078 lncRNA upstream 177764 7531717 ~ 7532203 (+) True G36609
TU49073 lncRNA upstream 184004 7521180 ~ 7525963 (+) True G36604
TU49242 lncRNA downstream 417223 8144541 ~ 8146263 (+) True G36727
TU49243 lncRNA downstream 420609 8147927 ~ 8148229 (+) True G36728
TU49261 lncRNA downstream 496940 8224258 ~ 8224772 (+) True G36745
TU49270 lncRNA downstream 512145 8239463 ~ 8241892 (+) True G36754
TU49271 lncRNA downstream 512145 8239463 ~ 8244446 (+) False G36754
XM_039799188.1 mRNA upstream 260949 7434210 ~ 7449018 (+) True myh7ba
XM_039799189.1 mRNA upstream 260949 7434618 ~ 7449018 (+) False myh7ba
XM_039799190.1 mRNA upstream 260949 7435874 ~ 7449018 (+) False myh7ba
XM_039799192.1 mRNA upstream 263247 7434210 ~ 7446720 (+) False myh7ba
XM_039799119.1 mRNA upstream 293687 7412789 ~ 7416280 (+) True snai1a
XM_039797576.1 mRNA downstream 831 7728149 ~ 7751120 (+) False LOC120557338
XM_039797577.1 mRNA downstream 831 7728149 ~ 7751120 (+) False LOC120557338
XM_039797574.1 mRNA downstream 832 7728150 ~ 7751120 (+) True LOC120557338
XM_039797573.1 mRNA downstream 833 7728151 ~ 7751120 (+) False LOC120557338
XM_039797575.1 mRNA downstream 833 7728151 ~ 7751120 (+) False LOC120557338
TU48863 other upstream 451017 7242209 ~ 7258950 (+) False G36458
TU48651 other upstream 1071580 6635302 ~ 6638387 (+) False setmar
TU48489 other upstream 1657198 6035100 ~ 6052769 (+) False rybpb
TU48469 other upstream 1785567 5920924 ~ 5924400 (+) True G36156
XR_005638978.1 other upstream 2775803 4911700 ~ 4934164 (+) False cdk5rap1
TU49260 other downstream 500444 8227762 ~ 8228720 (+) True G36744
unassigned_transcript_183 other downstream 889680 8616998 ~ 8617069 (+) True trnae-cuc_4
unassigned_transcript_186 other downstream 914712 8642030 ~ 8642101 (+) True trnae-cuc_5
unassigned_transcript_189 other downstream 983691 8711009 ~ 8711080 (+) True trnae-cuc_6
unassigned_transcript_190 other downstream 1011649 8738967 ~ 8739038 (+) True trnae-cuc_7

Expression Profile