RNA id: XR_005638958.1


Basic Information

Item Value
RNA id XR_005638958.1
length 4078
RNA type transcript
GC content 0.49
exon number 23
gene id LOC120557344
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 19617181 ~ 19632519 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAAGAAGAAGAGCTTCGTCTCCGCTGCAGCCagcaacagaagaagaagaagaaggactTCGTCGTCTGCGTTTGCCTACCAGTTCGTTGAAGCCATCGACGACAACGCTTTGCATTATCGACACTAGGCTTGAAGAACAAGCAAGATAAGATACTGACTTACAAACATGTGGGATGGACCAGGACCAGGGCCAGGGCAAGGACCACGGGGAGGACGACCCTTTCGTGGTGATCATCGTGGAGACATGTTTGGTGGCAGAGATCGTCCCATGCCTGATTATAGAGGTAGAGATGGGATGAACATTGGTCAAATGGGCCCAAGACCTCTAGATCTGCCACCCATGGACATGAGAAGAATGGATGGGCCACCGATGAGGGGGCGTGATTTGGACCCATGTGATATGCGTGGTAGAGAGCCAAACAGAGATTTGTGCCGACCTGGAGAAGAGACAGACTTTAGTCTTAGAAGGCACTATGAAATTGccatcagagacaaactgatgAATTCATCTGCTTTCCCGGTACAAGGCAGGAACTCGGTAGACATGGGAGGGAGGGGTATGCCACCACGGGAACCAAACAACAGGTTTAtggacatgagagagagagagtcattTCATTATGATGTGCCACCGTTCAACAATCCCAATATTGATGGAAGAAGAGGGTTTCCCATAGGGCGAAATGATGGATTTAGGGACATATGTGACAGGCCCCCAATGCGCATTGGTGATACTGATGGCTATGATATGGACTTACCGCCACATGAAAGGAGAGTGATGGATACTGACCGAAGAGGAGGTCCGCCTTTCAATTCCAGAGGTGGATTTGATTCTGATATGGATTTCAGAAATCGTCTCGGTCCATCAACTGAATTCAGAGGTAGGGATCGATCTCCATTAAGATTTGGAAACAGTGATGTCCCTCCAGTGGACAGGGCAAGATCAGACATGCCTTCAGATGTTGCTGGCCCTCAAATATCAGAGTTTATGGGTGCGAAAGACGCACCCAGAGAAAGAGAATATCCAGATTCAAGTGGCAGTCCCCTTATGGATTATCGAAGCGGTGAAGAGATGACTCTCGCAGAGGAATGGAAGAACCGTCGAAAGGACAAGAGACCTTTCGTAGAAGTGGGTAAAGGTATGGGAGGTGTACCTGAACCTAGCTTTCCTGCAGGTTTTGGCAGAGATGTGAATGTTCGAGATCCACCACCATTTCAGGAAAGGGATAGGACATCTGTTGAATTTCAAGCAAAAGATGTTGTTTTTCCACGTGGTGACCACTTTTCTGCTTTGAATCTACCAACAATTACCAGCAAAGCTCCACAAGACGTTCCACGCCAGGAAATAAGTCCCCTTGCTGGCCCTCTTGGGAGAGACAATGAGAGTAAACATTGGCTTGGTGAAAGGAACCCAAAGCATAAATCAAATCGTGACGAAAGGCCTCCGTACCATCAAGAGAAGAATCAGCCCTCTCCTATGATTCAGGAGCCAAATGATTGTTTTAAAGGGCTGAAAGATATCCCACACAATCAAGGACCTGCCAGGGGTAAGATGGGGGCAGAATCTGATTTCCAAAGCAGCACCACTGTACAGGCAAGAGACCAAGACTACAGGGACATCGATTACAGAACAGGGTCCGGGAGGGCTTTTGAATACAAGCATGAGGCGCTTCAAGCACCAGAGAAACTCATCAAAGAGTCTAAACCAATCCCACCTTCCAAATTTAGTGAGTCTGGTTCTCAGGATCAAGATTACAGGAATGCATCAGTGGAGGACAAAGTTTCCAATACAATATCCATAATTGGTATTCCAAAGACTGCCACAATGGAGCAGATTCTTGGTGCCTTTGCAGTCCGTGACGGTGTGCCAATGCAGGGGATGAAAATCAATAACGTTGTGCCAGGTTACAGCTACGATACGGCCTATGTGGAGTTTTTAAACCTCGAGGATGCAGTCCGCTTCATGGAGTCCAACAAGGGATCCCTAAAGGTTGGCACTAGAACAACAACCATGAAGTATATTCAGCCAGACGACCGTAAAAGAAGTGTTCATGAATCAGATCACAAAGTATCTCAACTCCAGAAGCCCCAGTTGCCCAGACCAGATGAGCCTTTAGAGGAGTTGAAGACCAACCTGAATGGACCGAAACCAAAAGGCCCTACGGAGCCATTGTCCCACAGCCAGTGGCAGCGTAGCTCTGACCTGACTCCTGAAGCCTGGCAGCAGCAGGTGGACCAACAGCTCCAACAGCAAGAAACAGATCAGCAGGCTGAGTCTTGGGGCAACCGCAACCTTCCTCATCACAGTTCACACCAATCTGACTCCGTCTTTAAAGACAGCAAAACcatgataataaaaaatgtgaagCCCACAACCACAGTAGAGACTATCCTGAAAGCCTTGGATCCCTTTGCCTATCTGGATGAAAGAAATGTTCGCCTAGTCAAGGCCAAGCCACCAGGCGCCAAATGCTTCTGCTTTGTTGACATGGACTCCCACGAGCAAGTGACACGTCTGGTTGAACTCCTCACTAAACCCAGACCCCTTTATATTGATGGAGTCAGAGTTTATGCTGAGGTCGCGAAACCTCTGAAGAACCAAAAtttcagAAGAGACTTTGATAAACCAAACGGCTCCATCCTTGGGCATCCACCTGAGCCCAGCCTGATGGGGCAGCAGTACCCACCACCTCCGCTGTACTTTCAACCACTGCAGCCACCCGCTGGTGCCTCCACTGGAATGCAAGGTGATTTGACGACTGGCAGCACTATTGCTGCTCCGTCATCAGACCCCAGCATTGGACAGGGAATTGGCTACGGTGAGACTCCAGCTGTGGATCCGTCGTACCAGGCTGGTGGACCCCATGTGCCCACAGAATCAGCTGCCAAGACAGTCGCCGCAGACGGATCACAGCCCTACGTCTATGGCTCTGAGATTCCTGACATGACCAACTACTTGTACGATTCCACGTCAGGCTTCTACTACGATCCTGAGACGACACTGTACTACGACCCCAACTCTAGGTATTTTTACAACGCTCAAACCCAAGAGTACTTGTACTGGGATGCTGCATCAAAGACCTACATCCCAGTTCCAGGAGGGAACCCTACAGTGACCCAACCTATGACCATGACTGCTGAAGACCAGGCCATTCTTTCCAACCCAGCAGCAGATGCTCCTCTGGAAATGAAGAAAGCATTGGTGCCTCCCGACACCGCAGCAGCCCCGGTACTAGTTTCCATTTCTGACGCCGGCTCTGCTCCGGCGCCTGTTCCAACTTCTTCAGCGGCTCCTGAGAGGAAAGACGACGACGACGACTCTAAGAAGGACAAAGAGAAGGATAACGAGAAGCCGAGAAGTCTCGCTGCTGTCAAGATCATGAAAGACATGGAGCGCTGGGCGAAGATCCAGAATCGTCAAAAGGAAAGTGTCCGTTCCGCATCTCCGCTGTTGAAGACTGGAATGGACGATGACAGGAGGCAATCCAAGACGGCTGACGCTGGCTTTGCTATCTTTGAGAGGAAGATATCAGGTGCAGATGATCTTTTTAAGAAGCCCTTTGCTCCGCCGAAGAAAGATGAAAAGTCAAAGCGTCCAATGGGCTCCCTGGGTCTACTGGCATCAGACTATGCAGCTGGAAGTGATGAAGAAGTGGAAGAAGATAAGGATGAGGCAACTAAAGGTGGTCAGTGCGGCCAGTCTGAAGACAAGGACAATAAGCTGACAGACTGGAAGAAGATGGCCTGTCTGCTGTGTAGGAGACAGTTCCCCAACAAGGACGCTCTGATCCGCCACCAGCAGCTTTCTGACCTCCACAAACAAAATATGGAGATCCACCTTAAGATCAAGAGGTCAAAGAAGGAGCTAGAGGCACTAGAGAACCAGGAAAAAGAACTAAATTCCAGAGAACCGACAAGGTCACCAGAACCGAAAAGAAGAAAACCGCATCCACAGCATCATAATACCTGGGCTGGAAGCTCCAGGTAGGGAAATGAATACAGTCAGCGATAGACCTGGTTTAGGAGCTGAACCTGTCCCGCAGAGGAAAAAGAAGGAGCCTGTTGTTTGGGACCATGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54057 lncRNA upstream 168915 19442047 ~ 19448266 (+) False slc38a3b
TU54058 lncRNA upstream 168915 19442047 ~ 19448266 (+) False slc38a3b
TU54011 lncRNA upstream 190752 19424871 ~ 19426429 (+) False brk1
TU54012 lncRNA upstream 190752 19424894 ~ 19426429 (+) False brk1
TU54035 lncRNA upstream 242342 19374630 ~ 19374839 (+) True G40182
TU54153 lncRNA downstream 107715 19739721 ~ 19741388 (+) False sema3fa
TU54155 lncRNA downstream 107809 19739815 ~ 19741388 (+) False sema3fa
TU54169 lncRNA downstream 129167 19761173 ~ 19762498 (+) True G40284
TU54235 lncRNA downstream 436272 20068278 ~ 20121870 (+) True G40339
TU54258 lncRNA downstream 514729 20146735 ~ 20146983 (+) True G40352
XM_039797594.1 mRNA upstream 744 19601978 ~ 19616437 (+) True LOC120557345
XM_039797713.1 mRNA upstream 28565 19575151 ~ 19588616 (+) True LOC120557413
XM_039797712.1 mRNA upstream 29727 19574142 ~ 19587454 (+) False LOC120557413
XM_039797715.1 mRNA upstream 82266 19532337 ~ 19534915 (+) False inka1b
XM_039798715.1 mRNA downstream 55665 19687671 ~ 19741389 (+) True sema3fa
XM_039798717.1 mRNA downstream 55666 19687672 ~ 19741389 (+) False sema3fa
XM_039798716.1 mRNA downstream 55668 19687674 ~ 19741389 (+) False sema3fa
XM_039798718.1 mRNA downstream 55669 19687675 ~ 19741389 (+) False sema3fa
XM_039797691.1 mRNA downstream 110906 19742912 ~ 19746843 (+) True gnat1
TU54005 other upstream 290556 19324829 ~ 19326625 (+) True G40164
XR_005639014.1 other upstream 1391142 18215706 ~ 18226039 (+) False LOC120557740
TU53438 other upstream 1423255 18189615 ~ 18193926 (+) False tusc2b
TU53439 other upstream 1423255 18189615 ~ 18193926 (+) False tusc2b
XR_005638976.1 other upstream 1690294 17904698 ~ 17926887 (+) False wnk2
TU54184 other downstream 219542 19851548 ~ 19859341 (+) True cenps
XR_005638939.1 other downstream 285883 19917889 ~ 19923549 (+) False abhd14b
TU54259 other downstream 516098 20148104 ~ 20148690 (+) True G40353
XR_005638988.1 other downstream 2318370 21950376 ~ 21991799 (+) False itga7
TU55524 other downstream 4116904 23748910 ~ 23760951 (+) False cbfa2t2

Expression Profile