RNA id: XM_039797615.1


Basic Information

Item Value
RNA id XM_039797615.1
length 2738
RNA type mRNA
GC content 0.50
exon number 5
gene id pmepa1
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 1719454 ~ 1780723 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGGAGGGGGTTGGTCAGCTGTTTCctcaatgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtccgggcAGTGTGGGAATCTGTGTGAGAAAAAGTTGCAGACAAAGCTCAGTCTAgcttcagagtgtgtgtgtcagccggcgaggacacacacacacatacccacacacagcGTTGCAGCATCCACGGGACAGGACATGTAGTCTGGAGTTTAACTGCAGCGGGAGGACTTGTTATTAGTTAGTTTTTTAGTTTTGTGTTTAGTTTTGGGAAGAAGGTCTTCAGGTTACTGATCCTGGCTGGAGAAAGTCTGAGCAGAGAGAGCATGCAGCCTCCGTCAGGAAGCCACAGCCATGACAACTGTGTTCAGACCCAACTGTGCGCCCAGCTGGAGTTCGTCCAGATCCTGGTGATCgtggtggtgatgatggtgatggtggtggtcaTCACCTGTCTGCTGAACCACTACCGCCTATCTGCACGCTCCCTCCTCTCCAGACACGCCCCTGCACGCAGGAGACACCTGCCATTGGCCAACgaggCAGGTCTGTGGTCTTCTGAGGCGACAGGGACAACCAGTGGTCTTAACGAGCACCAGGTGTATAACCCACGGCCTCCAGACCGAGGGGTCCCCTCATCCTACCTACAGAGGGAGCCCCAGCACCCCCACCCCCAGCACGCCCAGCCCCAGCCCCAGCTCCAGCCCCAGCCCCAGCATGCCCAGTCCCAGCTCCAGTCCCAGCGCTTCCAGCACACATATGCCCCGAGTCGCTTCCAGCCGACATACCCCTACCTGCCCCAGAGTCTCATCGATCTTCCCCCCACCATCTGCCTCTCGGACGGAGAGGAGCCCCCTCCGTACCAGGGCCTCTGCACCCTGCAGCTTCGGGACCCGGAGCAACAGATGGAGCTGAACCGCGAGTCGGTCAGAGCACCGCCCAACCGAACAGTGTTTGATTCCCACTCCCTCAACCCATCCAGCTCCTGTCTGCAGGCCAGTCTGCAGGCCCCTCCTCCGAGTGTCCATTCAGGCGTCAGCGTGCTAGAAGCCCAGGAGGCCTTGTCCCGGCATCAGAAGCAGGGCTCTCGAGTAGAAGGAGCTCCCCCGACCTACAGCGAGGTGATCGGGCACTACTACCACCCGACATCCCTGACCCCCAGCCACAACCATCGGACTGTATTGTCCTCGCTAGCACCCCCGTCCTCATTCATACACGGCCTGCTCCGACCTCCGCCTCAGCAGCAGGGAAGTGTGGACAACAGGAATGCAAAGAACACGAAGGAGAAATCCCAGAAGGCCCAGCAGGTGTGACAGTACAGCCTCCTTATTCCTAGCCTGCAGGGGGGAAAAACCAGGATTTTTATGTCTGCTCACCACTTGCCAAGTGGTCAGAGCCAATGAGGAACGACCTGGTGACTGGTAGAAATCCACTCTGAATGGTTTAAGGGCTGATTCTCATTAGTTGTAGTTGTAGCTGACATGTTATCAGTTTCACAGTTTCCCCCACTTCACGGATCGGGCTAGGACTGAAGAAGCAGCATTTTGTGTCCGAGGAGCACTTCAGATGAGCCGATGATGTCAGAGATGGAGGGGAGAAGGTGCGAAGGGAAAGGTGGATACAGAAGCCTCCTTCTTCCCCTAAACAACTCCACATCATCCCTCCTCCATTAGACTGATCTAAACTAGTCTTCATTCATTATACATATTTACTCgttctgtttgtttttagaGAACTTTTGAACGTTTGTTGGTCTGTTCGTCTTTTTTCGCGCTTACAAAAAGCCGTTCTATCAAAGGCAAAATGGCGAAATGTTGCAATCTTGTTGTTTTCTTCCAGGTTTCGTTTTCTATTGATAATCCTTGCTGCTTTGACGTCATTCAGTTGGGTTTCAAGTCCACGACTGCACAGTAACCAACGTTGGCAGTGACTCCTGCATCAGGCGTTAGCTGGATCGCTGGGACACGTCCGCACATTAGGCTACTTCCAGAAAGACATTAGATTTAGTTAGCGCTATCTTAAACTAGCTTAGCAGTCGTAGCACAGTGCTCGAGCTAAACGTTCTGCCTTATATATCGACCAACCGATGCAGGAGTTGTCGCTAAAATccttttttagttttagttttctaAAGAAGGTTTGCACAAAGTTCAAGACTCTTCACCACAGAAACAGAGATATGATTGATGAGAGAGAAATCGGAGAAAGTAGGGGTATTTTTCTAAACTTGATAGATTCTTATGagtaaagatgttttttttttgtgtttttatatgttgTCTAGTTTGTAGAAAAAGAAACATCATTAATCTGTTGGGGTGCCAACTTTCACGTTGAACATTTTGCTACATACATGTTGgcatgtattacattttgagtatatatacacacatcgAGAGCGAAATTAAAAGCACGAATTTAGAGTTATTTATATAATTGCTGAAAAGAATTGCACTATTTTTTTAGTATGCGCAGATGGAGCGTGTGAGAGAGACCTTTATTGTGAAGGAGCTCTGTCTATTGAGGCATAAACAGAACGAGAGACCTGAACCCACAGGGGCTTACCAGAGGGTCGGACCCAGCTCAGTGCACAGCAGCCGGTATCACCAGAACATATCACGGGCAGATTCTGACTTGGGTTCAACAGACTCGGATCTACCATTACTGTGCcattgatgtaaaaaaaaaacgaatccCTCACTTATGCAAATGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47137 lncRNA upstream 13852 1708284 ~ 1751381 (+) True G35285
TU47135 lncRNA upstream 53532 1694410 ~ 1711701 (+) True G35283
XR_005638936.1 lncRNA upstream 66756 1698143 ~ 1698477 (+) True LOC120557079
TU47110 lncRNA upstream 106658 1658285 ~ 1658575 (+) True G35263
TU47105 lncRNA upstream 130968 1634060 ~ 1634265 (+) True G35260
TU47150 lncRNA downstream 30901 1811624 ~ 1837655 (+) False G35295
TU47156 lncRNA downstream 39049 1819772 ~ 1837655 (+) False G35295
TU47153 lncRNA downstream 56536 1837259 ~ 1837655 (+) False G35295
TU47124 lncRNA downstream 64658 1845381 ~ 1880375 (+) True G35272
TU47167 lncRNA downstream 97648 1878371 ~ 1879173 (+) True G35304
XM_039796568.1 mRNA upstream 109538 1653784 ~ 1655695 (+) True LOC120556832
XM_039796629.1 mRNA upstream 357607 1401533 ~ 1407626 (+) True si:ch211-112f3.4
XM_039796630.1 mRNA upstream 357794 1401533 ~ 1407439 (+) False si:ch211-112f3.4
XM_039798542.1 mRNA upstream 418223 1295253 ~ 1347010 (+) False LOC120557878
XM_039798799.1 mRNA downstream 63409 1844132 ~ 1853373 (+) True LOC120558009
XM_039798800.1 mRNA downstream 63409 1844132 ~ 1853373 (+) False LOC120558009
XM_039799185.1 mRNA downstream 104181 1884904 ~ 1899482 (+) True LOC120558223
XM_039799186.1 mRNA downstream 104188 1884911 ~ 1899482 (+) False LOC120558223
XM_039799091.1 mRNA downstream 119551 1900274 ~ 1905748 (+) True LOC120558160
TU47004 other upstream 536539 1224083 ~ 1228694 (+) True G35191
TU47006 other upstream 536539 1224083 ~ 1228694 (+) False G35191
TU47007 other upstream 536539 1224083 ~ 1228694 (+) False G35191
TU46983 other upstream 614992 1149700 ~ 1150241 (+) True G35175
TU46855 other upstream 929266 806843 ~ 835967 (+) False LOC120557002
TU47149 other downstream 30901 1811624 ~ 1837655 (+) True G35295
XR_005639078.1 other downstream 166614 1947337 ~ 1947427 (+) True LOC120558249
XR_005639077.1 other downstream 171627 1952350 ~ 1952484 (+) True LOC120558248
XR_005639076.1 other downstream 175593 1956316 ~ 1956450 (+) True LOC120558247
TU47185 other downstream 243571 2024294 ~ 2052125 (+) False asip1

Expression Profile