RNA id: TCONS_00075288


Basic Information

Item Value
RNA id TCONS_00075288
length 901
lncRNA type sense_over
GC content 0.31
exon number 2
gene id XLOC_037600
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 4538527 ~ 4606463 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACAGCGCCTGGAGTGTCGGAGATTGGCTtactgaagtgttttttttttttactttttttttttgagtaatatttaactGGAAAACGTAGTGATATGTGTTATTTTGTGTAGACATCTGTTAATGTGCTTTCATTTGTAATTAAACTATAACTGGAACAGACAATCCAGTAAAGGAAAACAAAAAGTAATCATTTAAAGCTCCGCATGATGCTCCTGGAAACACGGCTATGAATATGACGAACGACCTTTTTGAGCATTGATGTACATatcaaagaaaatatatttttaagatatgtGAAAAATAATGTGAGTGATACTGCTTGATGTGTATAAGATATGTTGAATACTGTACAGCTCCATTTAATTGATACTGTATCTATTGAATCATCGTTTTCTGTCAATGTTCTGTCAGTCTCCAACAACAACAGTTGAATTGGGGGGGTTAAAAAGTTGCAGCCTGTCtcaatttcttgttttttttcccccgtgTTAAAATCATAGAAGCTGATAATATGTGACTTTGTACTTGTCTTAATGTTAACTGTTTGTACTTTCTATTTCGAGTCTTATGTAAACTTATGTTTAagagtttaatataatataactgtTGTATTAAACCACTGCTTTTGAATGCATCACCTTATTTATTACACAACTTCTGTgagttttatttatcttttatttctaTCACGCTTTTTACAACGTACAGTACATACCAAAGGTTTGGACGCATCTTCTCATTCAACgagttttctttgttttcatgACTATGAAAATTTGTAGATTCACACTGAAGGCATCAAAACTATGAATTACCACATGTggaattatatacataattacCTTATGTATTAttacctaattaaattaaaagatttaacataaaatatttagtcacac

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073839 lncRNA downstream 587649 3931723 ~ 3951826 (-) True XLOC_037596
TCONS_00075285 lncRNA downstream 1143954 3358397 ~ 3395521 (-) False XLOC_037589
TCONS_00075286 lncRNA downstream 1144221 3374635 ~ 3395254 (-) False XLOC_037589
TCONS_00075287 lncRNA downstream 1144221 3394009 ~ 3395254 (-) True XLOC_037589
TCONS_00075284 lncRNA downstream 1259024 3265568 ~ 3280451 (-) True XLOC_037588
TCONS_00075289 lncRNA upstream 324279 4866100 ~ 4867439 (-) True XLOC_037602
TCONS_00073852 lncRNA upstream 501266 5043087 ~ 5044088 (-) False XLOC_037603
TCONS_00075290 lncRNA upstream 503154 5044975 ~ 5045989 (-) True XLOC_037603
TCONS_00073869 lncRNA upstream 1872963 6414784 ~ 6502093 (-) True XLOC_037612
TCONS_00074961 lncRNA upstream 1989728 6531549 ~ 6548796 (-) True XLOC_037614
TCONS_00073843 mRNA downstream 27862 4478199 ~ 4511613 (-) True XLOC_037599
TCONS_00073842 mRNA downstream 32656 4478199 ~ 4506819 (-) False XLOC_037599
TCONS_00073840 mRNA downstream 463855 4024250 ~ 4075620 (-) True XLOC_037597
TCONS_00073838 mRNA downstream 521023 3901324 ~ 4018452 (-) False XLOC_037596
TCONS_00073836 mRNA downstream 580942 3898132 ~ 3958533 (-) False XLOC_037596
TCONS_00073845 mRNA upstream 23801 4565622 ~ 4598883 (-) True XLOC_037600
TCONS_00073846 mRNA upstream 188577 4730398 ~ 4754746 (-) False XLOC_037601
TCONS_00073847 mRNA upstream 191715 4733536 ~ 4856767 (-) False XLOC_037601
TCONS_00073848 mRNA upstream 199797 4741618 ~ 4856767 (-) True XLOC_037601
TCONS_00073850 mRNA upstream 499164 5040985 ~ 5046315 (-) False XLOC_037603
TCONS_00073841 other downstream 92371 4443918 ~ 4447104 (-) True XLOC_037598
TCONS_00073830 other downstream 1019764 3508318 ~ 3519711 (-) True XLOC_037592
TCONS_00073827 other downstream 1042896 3490831 ~ 3496579 (-) True XLOC_037591
TCONS_00073809 other downstream 2202172 2330861 ~ 2337303 (-) True XLOC_037575
TCONS_00073808 other downstream 2261983 2226463 ~ 2277492 (-) False XLOC_037574
TCONS_00073868 other upstream 1867336 6409157 ~ 6409271 (-) True XLOC_037613
TCONS_00073875 other upstream 2175856 6717677 ~ 6717801 (-) True XLOC_037618
TCONS_00073897 other upstream 2980614 7522435 ~ 7539023 (-) True XLOC_037632
TCONS_00073901 other upstream 3099939 7641760 ~ 7655301 (-) True XLOC_037633
TCONS_00073935 other upstream 5201738 9743559 ~ 9805319 (-) False XLOC_037657

Expression Profile

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