RNA id: XM_039797660.1


Basic Information

Item Value
RNA id XM_039797660.1
length 1250
RNA type mRNA
GC content 0.44
exon number 4
gene id tspo
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 18515298 ~ 18517711 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTATACAACATAATTATTTAGCtagttaaataaaaacacaactacCAAATTACTCCACCAACTCTCTTGAGTTAGTCCTCCGACCAATCATCTTCGACGTCAATGTTTAGCGTGTCTGTGTATGCACGGGGAGTGTCTGTACCACACTGATAAGACAGCCCTGCCCGTTCAACAAACTTATATCACAATATAGCAGCATGCCTTAAGGTTTTCACTGTAACGGTAGGTGTGTAGCATTAATTATTAGCTAGTCCGACAAAACATACTGTAACGTTACATACTGTACGGACAACAACTGAGTGAGGGAACATGTGGCTGCCTATGCTTGGGATGACTGCCCTGCCGCACCTGGGAGGGCTCGTTGGCGGTTACATCACACGCCAACAGGTAAAGACCTGGTACCCGACCCTGAAGAAACCATCATGGCGCCCACCAAATGCAGCATTCCCTGTCGTGTGGACCTGTCTGTATACAGGCATGGGGTATGGCTCCTACCTGGTCTGGAAAGAGCTGGGAGGTTTCACTGAGGATGCACTGGTTCCACTGGGACTTTATGGGCTGCAGCTAGCACTGAACTGGACCTGGACTCCTATCTTCTTTGGCGCACACAAGCTGAAATTGGCACTCATGGAAATTGTTCTTCTCACGGGTACCGTCGCAGCCACCATGGTGTCTTGGTATCCCATCAACCGCACTGCCACACTGCTGATGGCACCCTACCTGTCCTGGCTGTGCCTCGCCACCTCTCTCAACTACTGCATATGGAGGGACAAcagtgaggagaaagaagagtAGGGAGACAGTTCTGTGTGCTTTGTGATTTTTCTTGTCATTAAATTGCTGCACTGTTTCACTGTTTAGCTTTTAGTTTTAGACCATAACGTTGGCTAAtgtgaatgtaaaaataaaaaaagatgataCAAAGAAGTCATGAGGTCATTGAGAGATAGTTTTAATCATAGTTTTTCTTGCTTGCCATCTGCAGCAATGGGGCAGCAGCATAATACACACCTTAGCCTTACTCTGTCTGATGAGGATCAAACAACCTGCCTCTGATCCatctttgttgttttgttaccCAAACTGAATGGATCCCTGCTAAAAATTCAAAGCTCTTAATGCAATATTGATCAGGCTACTTCTTTAAAGTGAACGAGAATCACCTTGTTATATTGTGACGGCTTTTGAACGCAACTATGACTATAATATGGACTAATAAAATAATCTTTTGGGGTTTGTCAAGTGTAAA

Function

GO: NA

KEGG:

id description
K05770 TSPO, BZRP; translocator protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53572 lncRNA upstream 62802 18448847 ~ 18452500 (+) True G39861
TU53269 lncRNA upstream 661936 17852516 ~ 17853366 (+) True G39665
TU53220 lncRNA upstream 729492 17785259 ~ 17785810 (+) True G39654
TU53197 lncRNA upstream 779396 17735486 ~ 17735906 (+) True G39638
TU53195 lncRNA upstream 786584 17727916 ~ 17728718 (+) False LOC120556838
XR_005638964.1 lncRNA downstream 26444 18544155 ~ 18547192 (+) True LOC120557393
TU53668 lncRNA downstream 52880 18570591 ~ 18570983 (+) True G39925
TU53669 lncRNA downstream 55971 18573682 ~ 18573909 (+) True G39926
TU53670 lncRNA downstream 56271 18573982 ~ 18574211 (+) True G39927
TU53677 lncRNA downstream 81313 18599024 ~ 18599229 (+) True G39934
XM_039797500.1 mRNA upstream 86704 18424507 ~ 18428598 (+) False ppil1
XM_039797499.1 mRNA upstream 86707 18425997 ~ 18428595 (+) True ppil1
XM_039797796.1 mRNA upstream 123646 18384593 ~ 18391656 (+) True si:ch211-157b11.14
XM_039797797.1 mRNA upstream 126418 18384593 ~ 18388884 (+) False si:ch211-157b11.14
XM_039798962.1 mRNA upstream 132207 18376550 ~ 18383095 (+) True c4h1orf159
XM_039797679.1 mRNA downstream 4048 18521759 ~ 18523086 (+) True tomm6
XM_039797678.1 mRNA downstream 5444 18523155 ~ 18524040 (+) True c4h1orf74
XM_039797664.1 mRNA downstream 32265 18549976 ~ 18564635 (+) True eif4enif1
XM_039797665.1 mRNA downstream 32265 18549976 ~ 18564635 (+) False eif4enif1
XM_039797667.1 mRNA downstream 32265 18549976 ~ 18564635 (+) False eif4enif1
XR_005639014.1 other upstream 289263 18215706 ~ 18226039 (+) False LOC120557740
TU53438 other upstream 321376 18189615 ~ 18193926 (+) False tusc2b
TU53439 other upstream 321376 18189615 ~ 18193926 (+) False tusc2b
XR_005638976.1 other upstream 588415 17904698 ~ 17926887 (+) False wnk2
XR_005639081.1 other upstream 621882 17893293 ~ 17893420 (+) True LOC120558252
TU54005 other downstream 807118 19324829 ~ 19326625 (+) True G40164
XR_005638959.1 other downstream 1099470 19617181 ~ 19632012 (+) False LOC120557344
XR_005638958.1 other downstream 1099470 19617181 ~ 19632006 (+) False LOC120557344
TU54184 other downstream 1333837 19851548 ~ 19859341 (+) True cenps
XR_005638939.1 other downstream 1400178 19917889 ~ 19923549 (+) False abhd14b

Expression Profile