RNA id: XM_039797678.1



Basic Information


Item Value
RNA id XM_039797678.1
length 886
RNA type mRNA
GC content 0.45
exon number 1
gene id c4h1orf74
representative True

Chromosome Information


Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 18523155 ~ 18524040 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GCTTTCATTTAATGTTACAAATTTGAACCATGTGTGATGTGATTTCTGCAGCTATGTCCGCTCAGGAGCTCTTTGTTGCTGCAGCTCGTAAAtgtctatctgctggtagaaaatCTCTTTCCGTCCCTCAGAGTCTGGATCTGGCTGTTCAGGTCTTAGCTCTTGATTTGGGATTGAAACCGGCTTTATTGTACGATAGCAACGGTGCCGGTGCAGATCAGGTGCAACAGTATTTGAGCTCTTTGCAGTCTTCCCAGCTTGTGTCTAAGTCACTTCTCACACTGGATTTAAATGGAAACACTCTTATTATTAATCCACTTACAGTCAGATCAAATGTAGAACAGCTGGTTCATGATAACAACGTGGCTTTTATTGATGTCTGCCACTCACTGGAGAAGCCAACCATCGCTGGCCTGCTCAGAGGAGAGCTGAAGAGCATGACACACGATTTACAGCTTCTCCTGAGAGGGGTTGAACAACTGAAGGAGGCTGAGAAACCTCATTATGTTGGAGAGAAGTCAGAGGAGTGGAACCTGTGCACAGCGTTTGGTATTTTATTGGGTTTCCCCGTCACTTACTGGTTCGATCAGAccaagagttttgaaaactgtctGTCTATGACTCCCCTGATGGTGACTACAGCTTCAGCAACATGGCAGGCAGACACCGCAGGTCACAGATGTTGTTTGTACTCCTTCAGCGTCCCGGCTGTTCTGCTTAAAGCGGTGCAGTCCAACCTGGAAAACTGGAAGCTTTGTTTACAAGAAAGATTTCAGCAGCAAAATGTCCTAAAGGATCTTACAGTTTGTCAATCCACAGTCACTCTGCCCTCAGTCTGTTTGTAATGCGAGCATGAAGTTGtctttaaataaactgttaaagACGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU53572 lncRNA upstream 70655 18448847 ~ 18452500 (+) True G39861
TU53269 lncRNA upstream 669789 17852516 ~ 17853366 (+) True G39665
TU53220 lncRNA upstream 737345 17785259 ~ 17785810 (+) True G39654
TU53197 lncRNA upstream 787249 17735486 ~ 17735906 (+) True G39638
TU53195 lncRNA upstream 794437 17727916 ~ 17728718 (+) False LOC120556838
XR_005638964.1 lncRNA downstream 20115 18544155 ~ 18547192 (+) True LOC120557393
TU53668 lncRNA downstream 46551 18570591 ~ 18570983 (+) True G39925
TU53669 lncRNA downstream 49642 18573682 ~ 18573909 (+) True G39926
TU53670 lncRNA downstream 49942 18573982 ~ 18574211 (+) True G39927
TU53677 lncRNA downstream 74984 18599024 ~ 18599229 (+) True G39934
XM_039797679.1 mRNA upstream 69 18521759 ~ 18523086 (+) True tomm6
XM_039797661.1 mRNA upstream 5444 18515298 ~ 18517711 (+) False tspo
XM_039797660.1 mRNA upstream 5444 18515302 ~ 18517711 (+) True tspo
XM_039797500.1 mRNA upstream 94557 18424507 ~ 18428598 (+) False ppil1
XM_039797499.1 mRNA upstream 94560 18425997 ~ 18428595 (+) True ppil1
XM_039797664.1 mRNA downstream 25936 18549976 ~ 18564635 (+) True eif4enif1
XM_039797665.1 mRNA downstream 25936 18549976 ~ 18564635 (+) False eif4enif1
XM_039797667.1 mRNA downstream 25936 18549976 ~ 18564635 (+) False eif4enif1
XM_039797668.1 mRNA downstream 25936 18549976 ~ 18564635 (+) False eif4enif1
XM_039797669.1 mRNA downstream 25936 18549976 ~ 18564635 (+) False eif4enif1
XR_005639014.1 other upstream 297116 18215706 ~ 18226039 (+) False LOC120557740
TU53438 other upstream 329229 18189615 ~ 18193926 (+) False tusc2b
TU53439 other upstream 329229 18189615 ~ 18193926 (+) False tusc2b
XR_005638976.1 other upstream 596268 17904698 ~ 17926887 (+) False wnk2
XR_005639081.1 other upstream 629735 17893293 ~ 17893420 (+) True LOC120558252
TU54005 other downstream 800789 19324829 ~ 19326625 (+) True G40164
XR_005638959.1 other downstream 1093141 19617181 ~ 19632012 (+) False LOC120557344
XR_005638958.1 other downstream 1093141 19617181 ~ 19632006 (+) False LOC120557344
TU54184 other downstream 1327508 19851548 ~ 19859341 (+) True cenps
XR_005638939.1 other downstream 1393849 19917889 ~ 19923549 (+) False abhd14b

Expression Profile