RNA id: XM_039797691.1


Basic Information

Item Value
RNA id XM_039797691.1
length 2238
RNA type mRNA
GC content 0.43
exon number 8
gene id gnat1
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 19742912 ~ 19746843 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCTCCTCTGTCAGATGGGCAGAGGATGCGAAATCCTCTGCTAAGACAGGAACGTTCTCAAACATTCTCCAGTTGTTTCCGCAGGCAGGTGATGCATCAGCTCCATAATTAACGGCACCGGTTAGAAAGTAGGCGATCAGCTAGGACCATCTCGGATTTTTTCCTGAAACTTGGCTTTTGAGCAGAGGGGCACAAACCGGGAAAAGTAGAATGGGGGCTGGAGCGAGCGCCGAGGAGAAACACTCCAGAGGGCTGGAGAAGAAGCTGAAGGAGGATGCCGACAGGGATGCAAGAACTGttaagctgctgctgctagGTGCTGGAGAATCTGGCAAAAGCACTATCGTCAAACAGATGAAAATTATCCACCAAGATGGCTACTCACTTGAAGAATCCATGGAGTTCATTGTCATCATCTACAGCAACACCCTGCAGTCCATCATGGCCATTGTGAAGGCCATGAGCACATTAAATATGAACTATGGCCACCCTGATCAGCAGGATGATGCCAGGAAACTCATGCATCTTGCAGACACCATTGAGGAAGGAACCATGCCTAAAGAGATGGCAGACATAATTTTGCGCCTATGGAAGGACTCTGGCATTCAGGCGTGCTTTGAAAGGGCCTCAGAGTACCAACTCAATGACTCAGCTGGATACTACCTGAGTGACTTGGAGCGTCTGATCCAACCAGGCTACGTGCCCACTGAGCAGGATGTGCTGCGATCAAGAGTGAAGACCACTGGTATCATCGAGACCACATTTGGCTTGAAAGATCTCAATTTCAGGTTAGTCAGTGCAGTATTTCTAAAGAGGATGGCACCAATAAGTGCTCCCACTTTGCTGGATTGCAATCATAAAGATAACATTCTTCTGTTTCCATGCAGAATGTTTGATGTGGGTGGCCAGAGGTCAGAGAGGAAGAAGTGGATTCATTGTTTTGAAGGTGTGACCTGTATCATCTTCATTGCTGCTTTGAGCGCCTACGACATGGTGCTGGTGGAGGATGATGAAGTGAATCGAATGCACGAGAGTCTGCACTTGTTCAACAGTATCTGCAACCACCGCTACTTCGCCACCACCTCCATTGTACTCTTCCTCAACAAGAAAGATGTGTTCACTGAGAAGATCAAGAAAGCTCATCTCAGCATGTGCTTCCCTGAATACGATGGCCCCAATACATATGAGGATGCTGGTAACTACATCAAATTACAGTTCTTAGACCTGAACCTGCGCCGAGACATCAAAGAAATCTACTCTCACATGACCTGTGCCACAGACACAGAGAATGTCAAGTTTGTGTTTGACGCTGTAACCGACATCATAATCAAAGAAAACCTGAAAGACTGTGGTCTCTTCTAAAAGTCATGCTGAGAAACCCAATGAAGggtGATGTTGTAGCCCTGTCACATTCCACAAATCCTCTCAATTCAAACTGAGGACTGAAGACGAAAACTAAACCCCTCCCCATCCTCAAAACTGGCGAACGCAAAAAATTCAAATCAATTTGTTGTGTTCCAATGAAGTTGTAGCTTTAACAAGACTTTTGATCAAGTCCAGAAGACAGTTCTTCAGTCAGAAAATCCTGTGCAGATTTCAGATGAGTTGAATTTTAGTCTAGCTACCTTTTCTCTTGAGTCTTTTGAAATCATCTATTGGAGAGCTATGCTATCTGTAGTTAAGACATCAAAAGCTTCTGTCAGCATTACGTGTTTTCTTCTCACATCCACTAATGTGAATAGATGTCAGGCTAATGCATCTTTTCTCCAGTAACTGGTCAGTAGCCTATACAGCCAGAAAGCAAACAAGAGGGCCTCACCACCTGCAGACACAATTCAACAGGAACTTGTCACTAGAAATGGCTTTTATGTACAGGTCTACAGCTCACTTTGAGACCAAATTTAAACAGATGAGATACTTATTTTTTAAGTGTTAGAACATGTAACTTTTTGAAATAGTTATAGTTAGAAGGACCAGTTTAATTAAGTCTACAATTAAACATTTTTCTATTCGACAGTTCATGAAGGGTGGCGATACCATATGGATCTGTAACAGTTAACTGGTAGATGTAATATACTTCAATTTAAAAAGTACTTGTCTAAAGGTTAACAATCTACAGGCCTGTGAGCCAACTATCACTGTACAGAAACCAATAATTGCAAACCTTGACTAAACCTATTAAAGCTTATAGAAAACAGAGTACTTTCCCACTTTCACAAATAAAAACTAACACAGCAA

Function

GO:

id name namespace
GO:0007188 adenylate cyclase-modulating G protein-coupled receptor signaling pathway biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0031683 G-protein beta/gamma-subunit complex binding molecular_function

KEGG:

id description
K04631 GNAT1_2; guanine nucleotide-binding protein G(t) subunit alpha 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54153 lncRNA upstream 1524 19739721 ~ 19741388 (+) False sema3fa
TU54155 lncRNA upstream 1524 19739815 ~ 19741388 (+) False sema3fa
TU54057 lncRNA upstream 294646 19442047 ~ 19448266 (+) False slc38a3b
TU54058 lncRNA upstream 294646 19442047 ~ 19448266 (+) False slc38a3b
TU54011 lncRNA upstream 316483 19424871 ~ 19426429 (+) False brk1
TU54169 lncRNA downstream 14330 19761173 ~ 19762498 (+) True G40284
TU54235 lncRNA downstream 321435 20068278 ~ 20121870 (+) True G40339
TU54258 lncRNA downstream 399892 20146735 ~ 20146983 (+) True G40352
TU54264 lncRNA downstream 410011 20156854 ~ 20157525 (+) True G40357
TU54370 lncRNA downstream 480494 20227337 ~ 20227816 (+) True G40433
XM_039798715.1 mRNA upstream 1523 19687671 ~ 19741389 (+) True sema3fa
XM_039798717.1 mRNA upstream 1523 19687672 ~ 19741389 (+) False sema3fa
XM_039798716.1 mRNA upstream 1523 19687674 ~ 19741389 (+) False sema3fa
XM_039798718.1 mRNA upstream 1523 19687675 ~ 19741389 (+) False sema3fa
XM_039797590.1 mRNA upstream 110393 19617181 ~ 19632519 (+) True LOC120557344
XM_039797616.1 mRNA downstream 48511 19795354 ~ 19804157 (+) True ddi2
XM_039797617.1 mRNA downstream 48511 19795354 ~ 19802238 (+) False ddi2
XM_039797618.1 mRNA downstream 58514 19805357 ~ 19809864 (+) True si:ch73-15b2.5
XM_039797971.1 mRNA downstream 92321 19839164 ~ 19847354 (+) False h6pd
XM_039797973.1 mRNA downstream 94557 19841400 ~ 19847354 (+) False h6pd
XR_005638959.1 other upstream 110900 19617181 ~ 19632012 (+) False LOC120557344
XR_005638958.1 other upstream 110906 19617181 ~ 19632006 (+) False LOC120557344
TU54005 other upstream 416287 19324829 ~ 19326625 (+) True G40164
XR_005639014.1 other upstream 1516873 18215706 ~ 18226039 (+) False LOC120557740
TU53438 other upstream 1548986 18189615 ~ 18193926 (+) False tusc2b
TU54184 other downstream 104705 19851548 ~ 19859341 (+) True cenps
XR_005638939.1 other downstream 171046 19917889 ~ 19923549 (+) False abhd14b
TU54259 other downstream 401261 20148104 ~ 20148690 (+) True G40353
XR_005638988.1 other downstream 2203533 21950376 ~ 21991799 (+) False itga7
TU55524 other downstream 4002067 23748910 ~ 23760951 (+) False cbfa2t2

Expression Profile