RNA id: XM_039797757.1


Basic Information

Item Value
RNA id XM_039797757.1
length 1186
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC120557435
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 28720911 ~ 28722206 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACATTCATATGGAGATGTGGGACTATAAATAGGAGGGATGAAGCCAGCAGAGATCAGATTCTCTCTACAGAGACCTCTACAGCACAGAGATCCAGACATGGCACCTACAATCACTGCAGCAATGACCGATTCTCAGGAGCATCTGACTCTGACCCACAAGCTCAGAAAGCCTCTGGTGGAGAAGTTACGCAGAGAGCGAATCAACAGCAGCATTGAGCAGCTCAAGTCTCTCCTGAGTCCAGAGTTCCTCAAACAGCAGCCAGACTCCAAGCTGGAGAAAGCAGACATCCTGGAGATGACAGTTTTTGTCCTGAGACGGCTGCAGCAGCAGAATCAACATGTGGACTCAGCAGCTGTCGGTCAGGGCTATTCCAGATGTGTCCAAGAGGTGACACACTTCCTGTCCAAAGAGCAGGTGAAGACCCAGTCCCAGAGAAGACTGCTGAACCACATCAACAAGCTGCAGTCTTCCTCTGATAACAACCTGAGAGAGGCTGACTTCTCTCTTCTGAGCTCCACAGTCCAGACCAGCATCACCAAAGAGAAGAGTCCAGTCAACAGCGCCGTCTGGAGGCCGTGGTAGACATCCCAAAGActtgtacaaaagtgaagctcATGAGTGAAACGAGCAATTGTACTTGTACTCTTGGACATTTAACCACGTCCTCATTCTTGTAGTAGTCTCATTTTGAGTTCCGCAATGTTTAACTTTTATTACCTTTTGTAAGGGTCATATTGTGTATTTCTGTGATATTTGCAGGTTGGCTATTTTGTATTTCAAAGGTAGTCACTTATTTCTGATTCAGATGTTACTCTGAAGTAAACATTATTGTTCCGAATGGGAATGCCTCTATATTGTCAGGGTCACTGACAATGATGCATGTACTTTTTCTCCAACTTGGAGACACAGTTAATCATGTTGAACATGTTTCAGACCTATATGTGATATTCACATATTCTGTTTATTGAAATGTCCTCTCCGGTTTATCTCTAAACATCTCAATTGTCTGCATTTTTAGCCGATGAGTTTTGTGTGTTCATTAAGACAAATGTGCTGCTTTGTAACTCTGTGAGTGACAGCACTCATACCTTCAATGAAGGCCTTGTGTGTTTGGAAAATGTCTCAAAAATGAATGTATCTCTTCAAGCCAAGTGATGCGcattaaaacaatcacaaaaacaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56849 lncRNA upstream 109409 28610217 ~ 28611502 (+) True G42249
TU56813 lncRNA upstream 159647 28560794 ~ 28561264 (+) True G42230
TU56793 lncRNA upstream 505732 28214748 ~ 28215179 (+) True G42211
TU56713 lncRNA upstream 897658 27722002 ~ 27823253 (+) False ephb2b
XR_005638969.1 lncRNA downstream 108402 28830608 ~ 28836904 (+) True LOC120557449
TU56979 lncRNA downstream 158638 28880844 ~ 28881314 (+) True G42345
TU56989 lncRNA downstream 177621 28899827 ~ 28900125 (+) True G42355
TU56997 lncRNA downstream 195429 28917635 ~ 28918195 (+) True G42362
TU57000 lncRNA downstream 197454 28919660 ~ 28920283 (+) True G42365
XM_039798506.1 mRNA upstream 80222 28612546 ~ 28640689 (+) False rnf207a
XM_039798502.1 mRNA upstream 80222 28612808 ~ 28640689 (+) True rnf207a
XM_039798507.1 mRNA upstream 80222 28620241 ~ 28640689 (+) False rnf207a
XM_039798504.1 mRNA upstream 80222 28621192 ~ 28640689 (+) False rnf207a
XM_039798503.1 mRNA upstream 80557 28612540 ~ 28640354 (+) False rnf207a
XM_039797749.1 mRNA downstream 115044 28837250 ~ 28855733 (+) True LOC120557430
XM_039797748.1 mRNA downstream 115044 28837250 ~ 28855733 (+) False LOC120557430
XM_039797750.1 mRNA downstream 115044 28837250 ~ 28855733 (+) False LOC120557430
XM_039797755.1 mRNA downstream 162370 28884576 ~ 28891360 (+) True pnp4a
XM_039797753.1 mRNA downstream 182792 28904998 ~ 28915648 (+) True rem1
XR_005639013.1 other upstream 2022340 26653260 ~ 26698571 (+) False anks1ab
TU56292 other upstream 2172112 26542507 ~ 26548799 (+) False G41850
TU56293 other upstream 2172112 26542507 ~ 26548799 (+) False G41850
TU56251 other upstream 2447596 26268602 ~ 26273315 (+) True G41825
TU55525 other upstream 4959960 23757758 ~ 23760951 (+) False cbfa2t2
TU57106 other downstream 518207 29240413 ~ 29242253 (+) True G42449
TU57834 other downstream 3737926 32460132 ~ 32460863 (+) True G43045
TU57843 other downstream 3748589 32470795 ~ 32471605 (+) True G43051
TU58042 other downstream 4315728 33037934 ~ 33041264 (+) False LOC120556790
TU58122 other downstream 4465532 33187738 ~ 33212318 (+) True G43277

Expression Profile