RNA id: XM_039797821.1


Basic Information

Item Value
RNA id XM_039797821.1
length 1612
RNA type mRNA
GC content 0.54
exon number 9
gene id st3gal8
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 28950477 ~ 28986588 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTTAACCGGCTGTTTACcggGTGTGGCCATAGATCCTGTCGCCATCAGAAAGCAGCAACGTGCACAGGACACAAAGTTCAGGCTTCATGGAGATGAAGCTGAGTGAAGAGATGACAGAACGGAACATGTCCAGATGACAACAGATAACACAGTCCAAATATGCTGACATAGCAGGCAGAGTGTTTGACAGCTCAACAACACACCCTTCCTCTTGCCGCCGCCCACTCATCGTCCGTCCAGCCATGTTGTTTAGGAGGAAGCTGTGGGTTGCCCTGATGATCACTGCCATCCTCTTCCTCGCCAGTCAGAGCATCCGGAGGAGACTCTTTCTGCCTCTGTCATTAGCCATGCACTTTAGATGGGTCACGCCCACCAGCAGGGAGACAGTAGTTGAACCCACGGCGCCTCCTGCTGATCCGACCCCTGACCCTCCCAGGACCCCCCCTCCTCCCAGCACCACCCAACCTGAAGCTGAGGAGAAGCCTGTAGAGAACTCCCAGTATGACCTGAGGTCGTGTAGTTGTACGGAGTCTTGTATTTCAGACCTGGGGGGGTCAGACTGGTTCAGCCGGCGCTATGACCCCAAACAGCAGCCCGTCCTCCAAGaccctaacaacaacaacaacaactttgaCCCTGAAGCACTCAGATGGTGGCTGAGTCTTCAGCGGTCCGGGAACGACCATACTCTAAAGGAAGTGATGTTAGATATGTTCAAGGTCATTTCCCCACCCACTGTGGACTTCAGGCCCCCTTCCTCCCGTTGCCGTAGTTGTGCGGTGGTTGGTAACTCCGGCAACTTGCTGGGGTCAGAAAACGGCAACCTGATCAACTCCCACGACTACGTAATCCGGATGAACAAGGCGGTGACTCGAGGATTTGAGAAAGACGTAGGGAATCGGACAACGCATCACTTCCTGTACCCGGAAAGTGCGGTGGACGTTGATCGTGGCGTCAGCCTCGTCCTGTTGCCGTTCAAACTGAGAGACCTGGAGTGGCTGACCAGCGCGCTGTCCACCGGCCAAGTCAAAATGACCTACATGAGGGTTAAAGACCGAGTGCAGGCTGATAAAGACAAGgttcTGGTGGTGAACCCAGTGTTCTTTAAGTATGTTCAAGATCGTTGGACCGAGGGTCACGGTCGCTATCCGTCCACTGGCATGCTGGCCATCATCTTCGCTCTGCACACCTGTGACCAGGTGTCGGTGTTCGGTTACGGCGGTGACCAGCAGGGGAACTGGCATCACTACTGGGAGGAGAATCGCTATGCTGGAGCCTTCAGGAAGACCGGAGTCCACAGCGCCGAATTTGAAACGCAGATCATCCACCAGCTCGCCAAGGAGGGCAAGATCAGTCTGCACCTGGGACGGAACCACTGACCTGCTGACCCCCAGACAAGCCTACAGACCTTTTGATCTACAGACTGACCTACATATAGACCAACAGACGTGCTGGCCAGCCGACAGACCTAAAGACAGATCTGCTGACTGACAGACCAATCGGCTTACTGATCATTCACCACTTAATTGTTTTGACCAAGAACCAGCTACATCTTATCTGGTATTCGACTGAGTCTGGTTGCTTACGGCACACCGGGCTGCCACGGCTTGT

Function

GO:

id name namespace
GO:0043412 macromolecule modification biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57000 lncRNA upstream 30307 28919660 ~ 28920283 (+) True G42365
TU56997 lncRNA upstream 32395 28917635 ~ 28918195 (+) True G42362
TU56989 lncRNA upstream 50465 28899827 ~ 28900125 (+) True G42355
TU56979 lncRNA upstream 69276 28880844 ~ 28881314 (+) True G42345
XR_005638969.1 lncRNA upstream 113686 28830608 ~ 28836904 (+) True LOC120557449
XR_005638971.1 lncRNA downstream 6878 28993466 ~ 28996272 (+) True LOC120557469
TU57048 lncRNA downstream 90376 29076964 ~ 29077256 (+) True G42403
TU57076 lncRNA downstream 197550 29184138 ~ 29185612 (+) True G42425
TU57078 lncRNA downstream 199192 29185780 ~ 29186375 (+) True G42427
TU57079 lncRNA downstream 199845 29186433 ~ 29186921 (+) True G42428
XM_039797771.1 mRNA upstream 1263 28925722 ~ 28949327 (+) False LOC120557450
XM_039797773.1 mRNA upstream 1263 28930574 ~ 28949327 (+) True LOC120557450
XM_039797772.1 mRNA upstream 1263 28930574 ~ 28949327 (+) False LOC120557450
XM_039797753.1 mRNA upstream 34942 28904998 ~ 28915648 (+) True rem1
XM_039796567.1 mRNA downstream 214252 29200840 ~ 29207769 (+) True c4h6orf89
XM_039798289.1 mRNA downstream 498579 29485167 ~ 29595866 (+) True LOC120557724
XM_039798903.1 mRNA downstream 643511 29630099 ~ 29636640 (+) True zgc:153675
XM_039798802.1 mRNA downstream 653018 29639606 ~ 29657185 (+) False hgh1
XM_039798804.1 mRNA downstream 653113 29639701 ~ 29657185 (+) True hgh1
XR_005639013.1 other upstream 2252019 26653260 ~ 26698571 (+) False anks1ab
TU56292 other upstream 2401791 26542507 ~ 26548799 (+) False G41850
TU56293 other upstream 2401791 26542507 ~ 26548799 (+) False G41850
TU56251 other upstream 2677275 26268602 ~ 26273315 (+) True G41825
TU55525 other upstream 5189639 23757758 ~ 23760951 (+) False cbfa2t2
TU57106 other downstream 253825 29240413 ~ 29242253 (+) True G42449
TU57834 other downstream 3473544 32460132 ~ 32460863 (+) True G43045
TU57843 other downstream 3484207 32470795 ~ 32471605 (+) True G43051
TU58042 other downstream 4051346 33037934 ~ 33041264 (+) False LOC120556790
TU58122 other downstream 4201150 33187738 ~ 33212318 (+) True G43277

Expression Profile