RNA id: XM_039797830.1


Basic Information

Item Value
RNA id XM_039797830.1
length 2073
RNA type mRNA
GC content 0.46
exon number 16
gene id LOC120557474
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 7082265 ~ 7090752 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGACTTGGCGTTTGAACGTACAGCGGGGAAACGGAACAGtcaattgtgtttttgttagcGAAGTTCTGTCTGATAGAGACAGTTTAACTCCACTAAAATGTCTTATTCCACACAGTATTAGGGATTCTTGATTTCATTACGAAGGACTGCGCAATAACTTAACATCCTTGTTTTGGAGATCCGTGTGACAGCAAGATGCCTATCCGAGCATATTGCACAATTTGCTCCGATTTCTTCGATCACTCCAGAGATGTCGCTGCCATCCACTGCGGACACACTTTCCACTATGAATGCCTTCTCCAGTGGTTTCAGACAGCCCCGACAAAAACCTGTCCACAATGTAGAAAACAGGTCAGCACCAGACACATTATCAGCAAGCTGTTCTTTGACATtggtggagaggaggagagcacAGCAGACCCTGAGTGCTTGCAGAATGATCTTGATCGAATGAAGGCACTTTTAAGCTCTAAAGAGCGAGACTGGCGGGATAAACAGAAGCTGGTGGACAGTTTGAAGGACACTGTGGACAAGCAGAGGAGAGACCTGGACAATGTACGGAAAGAGATTATGGAAAAGGAGATGCTCTGTTCTGCCCTCAGAAAACAGATGACATACCTGGAGACGCAACAGAATGAAACTCAGGCTGCCAAGGAGGAAGCCCGGAGACTCAGgaccaaaatgaaaacctttGAAAGCCTGGACATGTTGTTGCAGGGCCAGAGAGCAGAGGTGGAGTCCATGATCACAGATATGGGTGTCAGCCAGGCGGCAGTGGAGCAACTCTCAATCTACTGCATCTCGCTCAAAAAAGAGTATGATAATCTTAAAGGAAGCCTGAAGTCTTCGAATGACATGTGTGAGAAGCTGAAGAGAGAAGTGCTCACCTCAAACAACAAGTTACTCAAAGCCACAGTGGAGGTGAATCAGACCAAAGAGGACATGAAGTCCCTGCAGAACGATCTGGCCAACGCTGACAAAGAGATCTCTAGTCTGAAGAAGAAAGTGGAGTTTCTTCAGAGGACTCTGAGCACCCCGACACGGACAAATGAAGCCCTCAGTCGGCTCGTCTTTGAAAGCCCGGCCCCAATGGAGCTGAAGCAGCCTCGTCTCCACCAGCCTGCAGATAGCAAGGATATTGACCTCAACATGACTTACGACGTCCCTACGCCAGAGGATGTGGCCAAGAAGCCAATGCAGTTCCAATCCAAGAAGATGCGGCTTGATCCAGCAACgtTGTCCAAACACAGCGAGAAAAGTTCATCTCTAAGCAAGGCTCGAGATGAGGATGGATCCATGGATCCTTTTTTGAGGAACTCCCTCCTCTTCAGAAAAAAGACTTTCGGTAGCATGTTGGACCCTCAGAGGAAGCCCGGAGTTGTGAAAAGTGGTTACGATGGTTTAGGAGGACGTACTAAATTCATCCAACCTTCTCCTTTATCAGAGATTCGCCCGCTGATGAAAGCTAAAAGGAAAAAGGTAACCAGGCCTCAACCCAAGATTGCAACTTGCCTGACTCTGGACGGCTTCCTCGAGTAAATGTGGAGCTCTTCTTCCATGGATGCGGAGTCTAAGGTCAGAACGCTGTAGCTGTGTGAGGTAGCATGTTTGTGCTGCTCTGGCACACAGAACCAGCCTGGCAGCGGTTCTGccgctcagcaccaaacaggactCTCGGAATTAACTTTACCTAAAAGTAGTAACTGACCTCCCACTTAACGACGGATGCTGAGTTTTGGTGACATCAGCAAACCtgctgtacattttttttttttttttgttgactcTGACTTGTTTGTGGAGACTGTGTCTTGACCAGCCTTTGCGTTGGAGCCTATTCTTGTTGTCATGTGCGTGTCTGTATGCGTGAGACAAACCGACTTATTTGCGGACCATTCAAATGTCAGTGCTCTGTATTATGTCACTGATAATCACTGATGCATCTGTTGGCTATACCCGTCTTGTGAAACACCTTCATGTGGATATATACTTTaggtattattttatttttagcttCACTGGTCCTGCTAAATGTAAACCAACtcaaataataaacaatatttttttattaa

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11985 TRAIP, TRIP; TRAF-interacting protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48742 lncRNA upstream 126410 6955533 ~ 6955855 (+) True G36370
TU48741 lncRNA upstream 128358 6953452 ~ 6953907 (+) True G36369
TU48740 lncRNA upstream 131216 6948079 ~ 6951049 (+) True G36368
TU48723 lncRNA upstream 309095 6772736 ~ 6773170 (+) True G36353
TU48649 lncRNA upstream 500962 6578980 ~ 6581303 (+) True LOC120556885
TU48783 lncRNA downstream 25340 7114449 ~ 7117220 (+) True G36408
TU48784 lncRNA downstream 30787 7119896 ~ 7121438 (+) True G36409
TU48786 lncRNA downstream 34191 7123300 ~ 7123519 (+) True G36411
TU48787 lncRNA downstream 35833 7124942 ~ 7125628 (+) True G36412
TU48801 lncRNA downstream 57008 7146117 ~ 7147050 (+) True G36424
XM_039798613.1 mRNA upstream 140653 6882145 ~ 6941612 (+) False sema3fb
XM_039797955.1 mRNA downstream 94090 7183199 ~ 7185639 (+) False si:dkey-245f22.3
XM_039797957.1 mRNA downstream 94090 7183199 ~ 7185639 (+) False si:dkey-245f22.3
XM_039797595.1 mRNA downstream 199798 7288907 ~ 7306343 (+) True hcfc1a
XM_039797596.1 mRNA downstream 199798 7288907 ~ 7306343 (+) False hcfc1a
XM_039797600.1 mRNA downstream 223625 7312734 ~ 7317082 (+) True gata1a
TU48651 other upstream 443878 6635302 ~ 6638387 (+) False setmar
TU48489 other upstream 1029496 6035100 ~ 6052769 (+) False rybpb
TU48469 other upstream 1157865 5920924 ~ 5924400 (+) True G36156
XR_005638977.1 other upstream 2148101 4911700 ~ 4934164 (+) True cdk5rap1
TU48863 other downstream 153100 7242209 ~ 7258950 (+) False G36458
TU49260 other downstream 1138653 8227762 ~ 8228720 (+) True G36744
unassigned_transcript_183 other downstream 1527889 8616998 ~ 8617069 (+) True trnae-cuc_4
unassigned_transcript_186 other downstream 1552921 8642030 ~ 8642101 (+) True trnae-cuc_5
unassigned_transcript_189 other downstream 1621900 8711009 ~ 8711080 (+) True trnae-cuc_6

Expression Profile