RNA id: XM_039797837.1


Basic Information

Item Value
RNA id XM_039797837.1
length 3709
RNA type mRNA
GC content 0.51
exon number 8
gene id osgn1
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 2916796 ~ 2949567 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATAATCTGTGAATGTGCGGCTCTGAGTGTGAGCGGGCGGCTGGAGCTTCTCGTTGCACATGTTCCGGGAAGAAACCGAACGAAGAGCGTGGAACAAAAGCTGAGAAATGAATGACTGAGAGGACGAAAAGAAAACACGctcattttttcctcttcttcctcttcttctgatAGCTGGAGGAGGACGCAGATAGCTGCACCACCACCAGGAAATATCTTCAAAATGGACCTTCATGATAAAGAAATTATCCCTGGAGAGATTTTGCCTGTGGTGATCATCgGTAACGGTCCATCGGGGATCTGTCTGTCCTACCTGTTGTCAGGTTACACCCCCTACCTGTCACCTGAGGCGTCCCATCCCAACCCCCTGCTGCACAGCAAACTGGGAGAGCAGCCTCACCTGTCGCTGCTGgagcagGACCTGGAGTACCTGTGCGAGGGTTTGGAGGGACGGTCGTCCAATCCCGTGGCCGTGCTCTTTGATTCGCTGCTGCTGCCCGACAGTGACTTCGGATTGGACCACACGTCTCCGTTGGAATGGCGATACGAGCCGGAGCGCGCCATCCCACACCTGGTGCTGGGGAAGGGTCCGCCTGGAGGAGCCTGGCATGCTATGGAGGGCTCCATGCTAACTCTGAGCCTGGCTAACTGGATGGAGCTTCCCGGACTCAAACTGAAGGACTGGATGAGAGAGAAACGCAGAAATGTTCGAAACGACCGTGCCACGCCAGCAGAGATCGCCTCCTACTACCAACACTACGTTTCCCAGATGTCCCTGGAGCAGAGCTTTGCATGTGGTACCACCGTCACCTCGGTAACCAGGCAGCCTGGCAACCAGGAGGGGGCGCCACCCTGCTGGAGAGTCTCAGGACTGCAGCACAGAGAGGGGGAAGAGCTGGCAGatggttctgcTGTTTCCGAGGCCGTGCCCTTCTCCATGTTGGCCCACAACGTGGTGTTGGCGACCGGGACGCACGATATCCCGGCGCGCCTAGGCGTGGAGGGCGAGTCCCTGCCCTACGTCTGCCACTCCTTCTGGGAGCTGGAGGCCGCCATCTCTCGCGGCGAGCTCGACCAATCGTCAGACCCCGTGCTGGTGGTGGGGGCGGGGCTCACGGCGGCCGACGCGGTACTGGCCGCCCACCATCTCAACACGCCGGTTTACCACGCCTTCAGACGCTCGGTCACCGACCCAGGCCTCATCTTCAACCAGCTGCCCAAGCTGCTCTACCCAGAGTACCAcaagGTTCACCAGATGATGACTCAGCAGCAGTACCAGCCAAGCCCTCCACCGCAGGACCACGCCCAGAACCTCCATGACcactcctccccttcctccctccctccctcctcttcctcttccaccTCTTCACCCCCTTCCTCCTACCCAGGGTACCTGAGCTTCCCTCGCTACAGGGTGGTGGCGCTCCGACCGGACCGGAAGTGCGTTCTGGAGTCGGACTCTGGCCAGCGGACGGTGGTCCAGATCTCAAAGGCGCTGGTTCTGATCGGCGCCCACCCCAACCTCTCCTTTCTGGGCGACAATGGCCGTTCGCTTGGCGTCAACCCCGACGAGCCAATCACGTGCCGGAGGAACCCGATCGAAGTGGACCCGTTCACGAACAAGGTGGTTGCGGCAGACGGGCCGGGCATGTACGCCATGGGGCCGCTCGTCGGCGAGAACTTCGTCAGGTTCCTGAAAGGAGGAGCGCTGGCTATCGCTAGCGATCTCGCCAAGACACAGGGGGTGGGGGGAAGGGAGTTAACCACAGACAGATGGGTGGACAGACAGGCGACCACGCAGACAGAAGCAGAGGCTTGCGTTGGGGATTCGTAGCAGGTTTGGGGAAGGATGGAGTGGACCGGTCTGATCCGAGCTCATCGAATGAGACAAAACAGGAACTGCTGCAAAGAAAAAAGGTTTTCCAGATATGTAGGGAAATCAAAGGCGCTGCTAAGTTGTTTTGAGGTGTGAAAACGGCCAAGAAATGGGCTTTAGGACTGGAAATGCACTGGTTTGGATGGGTCTCATCTCTTAGTAAATCTACTGTAGATTTGGTTGGGCAAAAAGAAGCCTTCAGATCTGAAAATCCTGAAAAGCAGCTTTAAAAAAGTTGTGCTCCTACAGAAATACAGGGCAGTCGTATGTAAGTTGGAGTTAAAATGAGAAGAAGACAGTGAAGTGAAGGGTTCGTAATGCATTTGGGTCATCCCTGTCAAAGCATAAAGCTTAAAATGTACAACTTTACCAACTACAAGTTGTTCTGGAAGGCCGTAAACTCCACCATCAGCTTATGTGTACTATCCAATACTGGATTTTAGAGGCTGATACCAATATCTGCATATCGATATATTGGCAGATATTGTTTTTCTGTTAACGTTCTGGATGACGATCACTTGAATTTGGGTGACATGTACTTAACAAGACAATTTACAGTCACAAAATGTCAGTGCCCTCTGGTGGTCAAACAATGCCAACACCCTTTTATAATGACCTTGTACATATCTgccaaatatttggcttttCTGTAAAGCAGTTTCTCATATGTCGATATGTCTTCGATAAGCTAGAATCAGTTGATTATACTGGCTGTAGTTGTAGCTTTCATGAACAACTGGCAAACAACTGGTTTATGGTAAATACTGTACATCCATATCATGTTTTTAAAGGACTGTTTAACATGTCCAGGCTGATACAACCAAACATATGAGTTCATAACCTGTAAATATGACTTTATTCCTAACTTTACGAGTTAATGAGGACCAACACAAACAGAGATGGAAGAGGAGATCTGAAAAAGGGTGGAAAGAAGGAATCTTGAgagaatattaaaaaaagaaaagctgaatCCAAGTGTACGGACTCCACCGCAGTTGTAGACTCGAAGACTTTGCGGGCAGCGTTCCCCGGGAAGTCTGCGAGTGCTGAGGGCTCTCCAAATCCTCAATTCATCCCGTCCACAAAGGGGCCTCCAGCAGACTTTGTGCAGATTTCCAGAGAGTCTGCTTGGGGTGCAGACTTCACCGATTTAATGTGACGTTGTAGATTTTACAATTGTGAAACAGAATTGAGACCTGTGAACACATCACAGTACATACGGTTAAAGTCCCCAAGTGTGGAGTGGAGGGTGGACATTTGGATTCAGCCAAAGACAAGAATGATACATATATTCTGGTCTGGTTTACTGCTGGAGAGTCTCAGGACTGCAGCACAGAGAGGGGGAAGAGCTGGCAGGTACAGTGAATGAAAACAGggaatgttgtttaaaaaatgaaagagaGCAGACAGTTAaagaccagtgaagtcaattaagcactttcccggtgctggctgagcgttactgagcagcctccagctgagcttgaagacgtagatgtgacgtgagcaacctgtctgaaagtgtgaagtcttctggtagctgtgccgagagaaatctcaatcattcccaatcttacagagacggagagcgtgagTAGGAGCTGTCCATGAGCGTAGGAGCAAaatgttgctgaaatattttgttccgatGCTTTCATGGCCTCTCTACGGGCTTCTCCCTTGACTGTATGATGCCTCCACGTCCCCCTGattgcctgtgagcttctcctgtactatacggtaattcctctactgtgtgacagtaagtctcgtggttatgacccaatcattagcctattgttataaaagcgtctgctacggagccataac

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47600 lncRNA upstream 32676 2867927 ~ 2884120 (+) True G35572
TU47566 lncRNA upstream 130457 2783952 ~ 2786339 (+) True G35548
TU47559 lncRNA upstream 142206 2766807 ~ 2774590 (+) False G35544
TU47557 lncRNA upstream 142738 2768526 ~ 2774058 (+) True G35544
TU47554 lncRNA upstream 157300 2759204 ~ 2759496 (+) True G35541
TU47609 lncRNA downstream 33693 2983260 ~ 2983784 (+) False G35576
TU47620 lncRNA downstream 51436 3001003 ~ 3067663 (+) True G35584
TU47624 lncRNA downstream 64464 3014031 ~ 3053586 (+) True G35587
TU47626 lncRNA downstream 70909 3020476 ~ 3078404 (+) True G35589
TU47621 lncRNA downstream 274172 3223739 ~ 3224162 (+) True G35585
XM_039798727.1 mRNA upstream 34033 2863536 ~ 2882763 (+) True ccdc51
XM_039797681.1 mRNA upstream 80668 2826889 ~ 2836128 (+) True LOC120557395
XM_039797682.1 mRNA upstream 80668 2826890 ~ 2836128 (+) False LOC120557395
XM_039797683.1 mRNA upstream 98006 2810258 ~ 2818790 (+) True LOC120557397
XM_039798837.1 mRNA upstream 171516 2735859 ~ 2745280 (+) True LOC120558018
XM_039798877.1 mRNA downstream 14560 2964127 ~ 3073270 (+) True mtss1
XM_039798535.1 mRNA downstream 504033 3453600 ~ 3589612 (+) True epha8
XM_039799099.1 mRNA downstream 809927 3759494 ~ 3766040 (+) True c4h1orf50
XM_039797012.1 mRNA downstream 857605 3807172 ~ 3830945 (+) True nuf2
XM_039799131.1 mRNA downstream 944738 3894305 ~ 3913220 (+) True cfap92
TU47547 other upstream 169024 2747220 ~ 2747772 (+) True G35534
TU47274 other upstream 328634 2586175 ~ 2588162 (+) False G35364
TU47255 other upstream 422205 2487994 ~ 2494591 (+) True G35359
TU47237 other upstream 528822 2385615 ~ 2387974 (+) True LOC120556786
TU47185 other upstream 864671 2024294 ~ 2052125 (+) False asip1
TU47673 other downstream 332165 3281732 ~ 3358820 (+) False G35618
TU47674 other downstream 332165 3281732 ~ 3358820 (+) False G35618
TU47676 other downstream 332165 3281732 ~ 3328507 (+) True G35618
unassigned_transcript_179 other downstream 333364 3282931 ~ 3283002 (+) True trnae-cuc_2
unassigned_transcript_180 other downstream 336263 3285830 ~ 3285901 (+) True trnae-cuc_3

Expression Profile