RNA id: XM_039797885.1


Basic Information

Item Value
RNA id XM_039797885.1
length 2854
RNA type mRNA
GC content 0.46
exon number 24
gene id LOC120557498
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 17930482 ~ 17947838 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCATGTTGTCCTTGACAGTTTGAGCTGCCTGGGCTGCACTCTGGTGGAGCCATCATGGAGAGAGCTGTGGTGCAAGTCACGCTTTTTGGGCTGCTGCTGGTTTTGGCTAGCACACTACCAAACAAGGACAACTGGAACATCTACAGCTTTCACATCAACTCCACAGTGACCAGTCGTTATGCAACCACGGTCGTCACAAGCCGCGTGGCCAATCGCATGGACGACTCAAAGGAAATAGAGTTCCAGGTCCGGATTCCCAAGAACGCCTTCATCAGTAAATTCAGAATGTTTATAGATGGCCAATGGTACGATGGTGTTGTGAAAGGTAAAGAGAAAGCTCAGCAGCAGTACACTGAGGCTGTGTCCCGTGGCCAAAGCGCTGGGCTTGTCAGTTCTGTAGGGAGGACCCTCGAGGAATTTAAGACCTCTGTGACTGTGGCTGCCCACAAAAAGGTCACCTTTGAACTCACATATGAGGAGCTGCTGAAACGCAAGCTTGGCAAGTACGAGCTGCAAATCCACGCTCGACCCATGCAGCCTGTCAAAGACTTCAAGGTCGAtgtgtacattaatgagaaagCTGGCATCAATTTCATCGAGGTTAAAGGAGGACTAAGCACCAAAGCCCTGGCTAATGCCATTACCAGAACGCATGCAGACAAACAGGCGTGGGTGTATTTCTACCCAACAGAGGaccaacagaaaacatgtgATGGCTGTGGAGAGCAGGGTATGAATGGAGATCTGGTTATTGTTTATGACGTCAACAGGGACACCTCAATTGGAGACATCAAGACATCAGCTGGATACTTTGTTCATCACTTTGCTCCATCTAGTCTTTCCCGCATACCAAAAAATGTTGTCTTCGTTATTGATCAAAGTGGCTCAATGAGGGGCAAAAAAATGCAACAGACCCGAATAGCATTAATCCACATCTTGAACGACCTGGCAGAGGATGACCACTTTGGTCTTATCACTTTTGATAGCAACATTTTTCACTGGAAACAAGAACTTGTTCAGGCCAGCAAGGAAAACCTGGAGAGTGCTAAGACATTTGCACTGAATATTATTGAGAGAGGAGCCACAGACATTAACGCAGCAGTGTTGGAAGGAGCACGTATGCTGAATGCACATCCCAGAGAAGGTTCAGCGTCTATCGTCATACTTCTCACCGATGGAGACCCAACCTCAGGGGAGACAAATCTTGAACGAATACAATCAAATGTCAGAAGGGATATTGCAGACAAGTTCCCACTCTATTGTCTTGGTTTTGGTTATGATGTCAATTTTGAGTTCCTTGAGAAGATGTCGCTGCAGAACAATGGTGTGGCACGACGGATTTACGAAGACTCTGACGCTGATTTACAGCTCAAGGGTTTCTATGAAGAGGTGGCCACTCCTCTGTTGACAGATGTGACAATGATCTATAATGGAGGGACCAATCTAACCCAGACTAACTTCAGCCAGTATTATAATGGCTCTGAGATTGTGGTGGCTGGTCAGATCACTGACAACGACATTGAAACCTTCACTCCACAAGTTGTAGCCATTTCGAGGGATAGAAGAGTGACATATTCTAACACAAACGCCACCGTGGAGTACACTGGCACAGATTTTGACAGCCACGTCCAGAGAGTTTGGGCCTACATCACAGTCAAACAGCTTCTGGAGAAAGAGCTGCTGTTTTCTGGACCTGAGAAGGAGAACGTGAAGAAAGAGGCCTTGGAGCTGTCGCTGAAGTACAGCTTTGTAACCCCACTTACATCCATGGTGGTCACCAAGCCTCTGGGGGAGAAAACAGATGTGCTCCATAAACCTAAGGAAGGTGGACCAACACAGGCACGGCCATCTCATGTAGGGCATCAACCGTCTTTGACACAAAATACTATGGCGATTCGGGGATACGGCGGTTCCTTTACTCcaCAAATGTTTTTTCCAGGTGGTTGGCCTATGCCAATGGACATAGCACAACCTATACCAGCTTTAACACCACAACATATACCAGCGAGGCGTCGTTCTCAAGGTGTTAGTAGTGGTGGTCTCTCCGGAGCATTCCTTAAAAACCCACCGACCAACAGTTATCAATTTGTTTCCATAGTAGCTTCACCAGTTCCTCTTTCCCACAGGTTTCTGCTAAAAACTGAGAATCTGTCTCTTCCACTCTGCTTTGATGTCACTGGAGATGTTCGCCTTAAACTACTTCACCATCGCAACAGGGAGCTGTCTGTGAATGGTGAGCTTGATACAGTAACGAATGGAGGCTTCAGAAGGATTGTCATCCACTTCAAGACTGACCTTTATGTTGAGGTTGACACCAATGTCATCACTGTACGAGAGGGACAGACACTGACACGCCACACTGGACAGGATCTCATCACAGCTGGAAGTTTGACAGTGATTAGGCGGAACAAGGAAATAGATGTTGCAGCTGGAGACACACGCATGGTCATCTATATTCATGAGAAGGATGGCGTGGAATTCCTCTGGCCGGTTTTGAGACAGCAGCCACTGGACAACAACGTTACAGGAATCATAGCTCTAAAGCCAGCAGTTTATGAGGAGGTGCAACAAACTCCCTCAACAAAACTTAAGATCAAAGACCAGGAGATTGACGTTACCAGGTCCAATGCTTTTGACTACAGTATAGTCTCTCCACCGACACTGGACTGCTGGCTCATGTCTGCGGCGTCTGTCCTGCAGAGACGCCTGGATGATTTCATCGTTACTCAACTTTAACTGGGAATTATGTTGAATCACTTGCAAAGatttcattttaaagaaaaaaatgcaaacactGATTCATCTTGGAACAAACCTTCCACCTGGTACTAACAAATAAATAGTATTCCCGAT

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0009072 aromatic amino acid family metabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0044421 obsolete extracellular region part cellular_component
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component

KEGG:

id description
ko00360 Phenylalanine metabolism
ko04610 Complement and coagulation cascades
ko05133 Pertussis
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53269 lncRNA upstream 77116 17852516 ~ 17853366 (+) True G39665
TU53220 lncRNA upstream 144672 17785259 ~ 17785810 (+) True G39654
TU53197 lncRNA upstream 194576 17735486 ~ 17735906 (+) True G39638
TU53195 lncRNA upstream 201764 17727916 ~ 17728718 (+) False LOC120556838
TU53191 lncRNA upstream 208134 17715412 ~ 17722348 (+) True G39633
TU53572 lncRNA downstream 501009 18448847 ~ 18452500 (+) True G39861
XR_005638964.1 lncRNA downstream 596317 18544155 ~ 18547192 (+) True LOC120557393
TU53668 lncRNA downstream 622753 18570591 ~ 18570983 (+) True G39925
TU53669 lncRNA downstream 625844 18573682 ~ 18573909 (+) True G39926
TU53670 lncRNA downstream 626144 18573982 ~ 18574211 (+) True G39927
XM_039797873.1 mRNA upstream 364 17904701 ~ 17930118 (+) False wnk2
XM_039797880.1 mRNA downstream 3251 17951089 ~ 17961726 (+) True LOC120557497
XM_039797882.1 mRNA downstream 3251 17951089 ~ 17961726 (+) False LOC120557497
XM_039797881.1 mRNA downstream 3251 17951089 ~ 17961726 (+) False LOC120557497
XM_039797883.1 mRNA downstream 3251 17951089 ~ 17961726 (+) False LOC120557497
XM_039797884.1 mRNA downstream 3251 17951089 ~ 17961726 (+) False LOC120557497
XR_005638976.1 other upstream 3595 17904698 ~ 17926887 (+) False wnk2
XR_005639081.1 other upstream 37062 17893293 ~ 17893420 (+) True LOC120558252
TU53107 other upstream 321266 17607930 ~ 17609216 (+) True G39581
TU52841 other upstream 732265 17193221 ~ 17198217 (+) False srsf3b
TU53438 other downstream 241777 18189615 ~ 18193926 (+) False tusc2b
TU53439 other downstream 241777 18189615 ~ 18193926 (+) False tusc2b
XR_005639014.1 other downstream 267868 18215706 ~ 18226039 (+) False LOC120557740
TU54005 other downstream 1376991 19324829 ~ 19326625 (+) True G40164
XR_005638959.1 other downstream 1669343 19617181 ~ 19632012 (+) False LOC120557344

Expression Profile