RNA id: XM_039797891.1


Basic Information

Item Value
RNA id XM_039797891.1
length 2767
RNA type mRNA
GC content 0.47
exon number 22
gene id LOC120557498
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 17930482 ~ 17947838 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCATGTTGTCCTTGACAGTTTGAGCTGCCTGGGCTGCACTCTGGTGGAGCCATCATGGAGAGAGCTGTGGTGCAAGTCACGCTTTTTGGGCTGCTGCTGGTTTTGGCTAGCACACTACCAAACAAGGACAACTGGAACATCTACAGCTTTCACATCAACTCCACAGTGACCAGTCGTTATGCAACCACGGTCGTCACAAGCCGCGTGGCCAATCGCATGGACGACTCAAAGGAAATAGAGTTCCAGGTCCGGATTCCCAAGAACGCCTTCATCAGTAAATTCAGAATGTTTATAGATGGCCAATGGTACGATGGTGTTGTGAAAGGTAAAGAGAAAGCTCAGCAGCAGTACACTGAGGCTGTGTCCCGTGGCCAAAGCGCTGGGCTTGTCAGTTCTGTAGGGAGGACCCTCGAGGAATTTAAGACCTCTGTGACTGTGGCTGCCCACAAAAAGGTCACCTTTGAACTCACATATGAGGAGCTGCTGAAACGCAAGCTTGGCAAGTACGAGCTGCAAATCCACGCTCGACCCATGCAGCCTGTCAAAGACTTCAAGGTCGAtgtgtacattaatgagaaagCTGGCATCAATTTCATCGAGGTTAAAGGAGGACTAAGCACCAAAGCCCTGGCTAATGCCATTACCAGAACGCATGCAGACAAACAGGCGTGGGTGTATTTCTACCCAACAGAGGaccaacagaaaacatgtgATGGCTGTGGAGAGCAGGGTATGAATGGAGATCTGGTTATTGTTTATGACGTCAACAGGGACACCTCAATTGGAGACATCAAGACATCAGCTGGATACTTTGTTCATCACTTTGCTCCATCTAGTCTTTCCCGCATACCAAAAAATGTTGTCTTCGTTATTGATCAAAGTGGCTCAATGAGGGGCAAAAAAATGCAACAGACCCGAATAGCATTAATCCACATCTTGAACGACCTGGCAGAGGATGACCACTTTGGTCTTATCACTTTTGATAGCAACATTTTTCACTGGAAACAAGAACTTGTTCAGGCCAGCAAGGAAAACCTGGAGAGTGCTAAGACATTTGCACTGAATATTATTGAGAGAGGAGCCACAGACATTAACGCAGCAGTGTTGGAAGGAGCACGTATGCTGAATGCACATCCCAGAGAAGGTTCAGCGTCTATCGTCATACTTCTCACCGATGGAGACCCAACCTCAGGGGAGACAAATCTTGAACGAATACAATCAAATGTCAGAAGGGATATTGCAGACAAGTTCCCACTCTATTGTCTTGGTTTTGGTTATGATGTCAATTTTGAGTTCCTTGAGAAGATGTCGCTGCAGAACAATGGTGTGGCACGACGGATTTACGAAGACTCTGACGCTGATTTACAGCTCAAGGGTTTCTATGAAGAGGTGGCCACTCCTCTGTTGACAGATGTGACAATGATCTATAATGGAGGGACCAATCTAACCCAGACTAACTTCAGCCAGTATTATAATGGCTCTGAGATTGTGGTGGCTGGTCAGATCACTGACAACGACATTGAAACCTTCACTCCACAAGTTGTAGCCATTTCGAGGGATAGAAGAGTGACATATTCTAACACAAACGCCACCGTGGAGTACACTGGCACAGATTTTGACAGCCACGTCCAGAGAGTTTGGGCCTACATCACAGTCAAACAGCTTCTGGAGAAAGAGCTGCTGTTTTCTGGACCTGAGAAGGAGAACGTGAAGAAAGAGGCCTTGGAGCTGTCGCTGAAGTACAGCTTTGTAACCCCACTTACATCCATGGTGGTCACCAAGCCTCTGGGGGAGAAAACAGATGTGCTCCATAAACCTAAGGAAGGTGGACCAACACAGGCACGGCCATCTCATGTAGGGCATCAACCGTCTTTGACACAAAATACTATGGCGATTCGGGGATACGGCGGTTCCTTTACTCcaCAAATGTTTTTTCCAGCACAACCTATACCAGCTTTAACACCACAACATATACCAGCGAGGCGTCGTTCTCAAGGTGTTAGTAGTGGTGGTCTCTCCGGAGTTCCTCTTTCCCACAGGTTTCTGCTAAAAACTGAGAATCTGTCTCTTCCACTCTGCTTTGATGTCACTGGAGATGTTCGCCTTAAACTACTTCACCATCGCAACAGGGAGCTGTCTGTGAATGGTGAGCTTGATACAGTAACGAATGGAGGCTTCAGAAGGATTGTCATCCACTTCAAGACTGACCTTTATGTTGAGGTTGACACCAATGTCATCACTGTACGAGAGGGACAGACACTGACACGCCACACTGGACAGGATCTCATCACAGCTGGAAGTTTGACAGTGATTAGGCGGAACAAGGAAATAGATGTTGCAGCTGGAGACACACGCATGGTCATCTATATTCATGAGAAGGATGGCGTGGAATTCCTCTGGCCGGTTTTGAGACAGCAGCCACTGGACAACAACGTTACAGGAATCATAGCTCTAAAGCCAGCAGTTTATGAGGAGGTGCAACAAACTCCCTCAACAAAACTTAAGATCAAAGACCAGGAGATTGACGTTACCAGGTCCAATGCTTTTGACTACAGTATAGTCTCTCCACCGACACTGGACTGCTGGCTCATGTCTGCGGCGTCTGTCCTGCAGAGACGCCTGGATGATTTCATCGTTACTCAACTTTAACTGGGAATTATGTTGAATCACTTGCAAAGatttcattttaaagaaaaaaatgcaaacactGATTCATCTTGGAACAAACCTTCCACCTGGTACTAACAAATAAATAGTATTCCCGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53269 lncRNA upstream 77116 17852516 ~ 17853366 (+) True G39665
TU53220 lncRNA upstream 144672 17785259 ~ 17785810 (+) True G39654
TU53197 lncRNA upstream 194576 17735486 ~ 17735906 (+) True G39638
TU53195 lncRNA upstream 201764 17727916 ~ 17728718 (+) False LOC120556838
TU53191 lncRNA upstream 208134 17715412 ~ 17722348 (+) True G39633
TU53572 lncRNA downstream 501009 18448847 ~ 18452500 (+) True G39861
XR_005638964.1 lncRNA downstream 596317 18544155 ~ 18547192 (+) True LOC120557393
TU53668 lncRNA downstream 622753 18570591 ~ 18570983 (+) True G39925
TU53669 lncRNA downstream 625844 18573682 ~ 18573909 (+) True G39926
TU53670 lncRNA downstream 626144 18573982 ~ 18574211 (+) True G39927
XM_039797873.1 mRNA upstream 364 17904701 ~ 17930118 (+) False wnk2
XM_039797880.1 mRNA downstream 3251 17951089 ~ 17961726 (+) True LOC120557497
XM_039797882.1 mRNA downstream 3251 17951089 ~ 17961726 (+) False LOC120557497
XM_039797881.1 mRNA downstream 3251 17951089 ~ 17961726 (+) False LOC120557497
XM_039797883.1 mRNA downstream 3251 17951089 ~ 17961726 (+) False LOC120557497
XM_039797884.1 mRNA downstream 3251 17951089 ~ 17961726 (+) False LOC120557497
XR_005638976.1 other upstream 3595 17904698 ~ 17926887 (+) False wnk2
XR_005639081.1 other upstream 37062 17893293 ~ 17893420 (+) True LOC120558252
TU53107 other upstream 321266 17607930 ~ 17609216 (+) True G39581
TU52841 other upstream 732265 17193221 ~ 17198217 (+) False srsf3b
TU53438 other downstream 241777 18189615 ~ 18193926 (+) False tusc2b
TU53439 other downstream 241777 18189615 ~ 18193926 (+) False tusc2b
XR_005639014.1 other downstream 267868 18215706 ~ 18226039 (+) False LOC120557740
TU54005 other downstream 1376991 19324829 ~ 19326625 (+) True G40164
XR_005638959.1 other downstream 1669343 19617181 ~ 19632012 (+) False LOC120557344

Expression Profile