RNA id: XM_039797894.1


Basic Information

Item Value
RNA id XM_039797894.1
length 2802
RNA type mRNA
GC content 0.46
exon number 21
gene id LOC120557499
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 17965362 ~ 17978602 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCCTTgtctgtttaagtttaaaagACAGTTTGAGCTGCCTGGGCTGCACTCTGGTGGAGCCATCATGGAGAGAGCTGTGGTGCAAGTCACCCTCTTTGGGCTGCTGCTGGTTTTGGCTAGCACACTACCAAACAAGGACGACTGGAACATCTACAGCTTTCACATCAACTCCACAGTGACCAGTCGTTATGCAACCACGGTCATCACAAGCCGCGTGGCCAATCGCATGGACGACTCAAAGGAAATAGAGTTCCAGGTCCGGATTCCCAAGAACGCCTTCATCAGTAAATTCAGAATGTTTATAGATGACCAATGGTACGATGGTGTTGTGAAAGGTAAAGAGAAAGCTCAGCAGCAGTACACTGAGGCTGTGTCCCATGGCCAAAGCGCTGGGCTTGTCAGTTCTGTAGGGAGGACCCTCGAGGAATTTAAGACCTCTGTGACTGTGGCTGCCCACAAAAAGGTCACCTTTGAACTCACATATGAGGAGCTGCTGAAACGCAAGCTTGGCAAGTACGAGCTGCAAATCCACGCTCGACCCATGCAGCCTGTCAAAGACTTAAAGGTTGAtgtgtacattaatgagaaagCTGGCATCAATTTCATCGAGGTTAAAGGAGGATTAAGCACCAAAGCCCTGGCTAATGCTATCACCAGAACACATGCAGACAAACAGGCGTGGGTGTATTTCTACCCAACAGAGGaccaacagaaaacatgtgATGGCTGTGGAGAGCAGGGTATGAATGGAGATCTGGTTATTGTTTATGACGTCAACAGGGACACCTCACTTGGAGACATCAAGACATCAGCTGGATACTTTGTTCATCACTTTGCTCCATCTAGTCTTTCCCGCATACCAAAAAATGTTGTCTTCGTTATTGATCAAAGTGGCTCAATGAGTGGCAGAAAAATGCAACAGACCCGAATTGCATTAATCCACATCTTGAACGACCTGGCAGAGGATGACCACTTTGGTCTTATCACTTTTGATAGCAACATTTTTCACTGGAAAAGAGAACTTGTTCAGGCCAACAAGAAAAACCTGGAGAGTGCTAAGACATTTGCACAGAATATTCAAGCTAGAACAACCACAGACATTAACGCAGCAGTGTTGGAAGGAGCACGTATGCTGAATGCACATCCCAGAGAAGGTTCAGCGTCTATCGTCATACTTCTCACTGATGGAGATCCAACCTCAGGGGAGACAAATCTTGAACGAATACAATCAAATGTCAGAAGGGATATTGCAGACAAGTTCCCACTCTACTGTCTTGGTTTTGGTCATGATGTCAATTTTGAGTTCCTTGAGAAGATGTCGCTGCAGAACAATGGTGTGGCACGACGGATTTACGAACACTCTGACGCTGACTTACAGCTCAAGGGTTTCTATGACGAGGTGGCCACTCCTCTGTTGACAGATGTGACAATGATCTATAATGGAGGGACCAATCTAACCCAGACTAACTTCAGCCAGTATTATAATGGCTCTGAGATTGTGGTGGCCGGTCAGATCACTGACAACGACATTGAAACCTTCACTCCACAAGTTGTAGCCATTTCGAGGGATAGAAAAGTGACGTTTTCTGACACAAACGCCACCATGGAGTACACTGGCACAGATTTTGACAGCCACATCCAGAGGGTTTGGGCCTACCTCACAGTCAAACAGCTTCTGGAGAAAGAGCTGCTGTTATCTGGACCTGAGAAGGAGAATGTGAAGAAAGAGGCGTTGGAGCTGTCGCTGAAGTACAGCTTTGTAACCCCACTTACATCCATGGTGGTCACCAAGCCTCTAGGGGAGAAAACAGATGTGCTCCATAAACCTAAGGAAGGTGGAACAACACAAGGACACAGCACTGGAGTCCCCTTTCCACCCCCAGTCCAACCCTCCTGGGCATCAATCATTCCAGCCTTCCACAATGGCTTGCAGGGGATGCCAGGGATATCACGCTTTACAGACGCCTATGATGTCTTTGATGACTTTGTGGGAGCAGATGATGTTGATTCTGATGATTATGAAGACGCAATGATTGTGCCTGACAAAACAACTAATGTTCCTCTTTCCCACAGGTTTCTGCTAAAAACTGAGAATCTGTCTCTTCCACTCTGCTTTGATGTCACTGGAGATGTTCGTCTTAAACTACTTCACCATCCCAACAGGGAGCTGTCTGTGAATGGTGAGCTTGATACAGTAACGAATGGAGGCTTCAGAAGGATTGTCATCCACTTCAAGACTGACCTTTATGTTGAGGTTGACACCAATGTCATCACTGTACGAGAGGGACAGACACTGACACGCCACACTGGACAGGATCTCATCACAGCTGGAAGTTTGACAGTGATTAGGCGGAACAAGGAAATAGATGTTGCAGCTGGAGACACACGCATGGTCATCTATATTCATGAGAAGGATGGCGTGGGATTCCTCTGGCCGGTTTTGAGACAGCAGCCACTGGACAACAACGTTACAGGAATCATAGCTCTAAAGCCAGCAGTTTATGAGGAAGTGCAACAAACTCCCTCAACAAAACTTAAGATCAAAGACCAGGAGATTGACGTTACCAGGTCCAATGCTTTTGACTACAGTATAGTCTCTCCACCGACACTGGACTGCTGGCTCATGTCTGTGGAGTCTGTCCTGCAGAGACACCTGGATGATTTCATCGTTACTCAACTTTAACTGGGAATTATGTTGAATCACTTGCAAAGatttcattttaaagaaaaaaatgcaaacactGATTCAACTTGAAACAAACTTTTCACCTGTTACTAACAAATAAATAGTATCCCCGATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53269 lncRNA upstream 111996 17852516 ~ 17853366 (+) True G39665
TU53220 lncRNA upstream 179552 17785259 ~ 17785810 (+) True G39654
TU53197 lncRNA upstream 229456 17735486 ~ 17735906 (+) True G39638
TU53195 lncRNA upstream 236644 17727916 ~ 17728718 (+) False LOC120556838
TU53191 lncRNA upstream 243014 17715412 ~ 17722348 (+) True G39633
TU53572 lncRNA downstream 470245 18448847 ~ 18452500 (+) True G39861
XR_005638964.1 lncRNA downstream 565553 18544155 ~ 18547192 (+) True LOC120557393
TU53668 lncRNA downstream 591989 18570591 ~ 18570983 (+) True G39925
TU53669 lncRNA downstream 595080 18573682 ~ 18573909 (+) True G39926
TU53670 lncRNA downstream 595380 18573982 ~ 18574211 (+) True G39927
XM_039797880.1 mRNA upstream 3636 17951089 ~ 17961726 (+) True LOC120557497
XM_039797882.1 mRNA upstream 3636 17951089 ~ 17961726 (+) False LOC120557497
XM_039797881.1 mRNA upstream 3636 17951089 ~ 17961726 (+) False LOC120557497
XM_039797883.1 mRNA upstream 3636 17951089 ~ 17961726 (+) False LOC120557497
XM_039797884.1 mRNA upstream 3636 17951089 ~ 17961726 (+) False LOC120557497
XM_039796419.1 mRNA downstream 3883 17982485 ~ 17998537 (+) True LOC120556720
XM_039797895.1 mRNA downstream 21330 17999932 ~ 18007378 (+) True LOC120557500
XM_039796297.1 mRNA downstream 28854 18007456 ~ 18012488 (+) True LOC120556657
XM_039796296.1 mRNA downstream 28854 18007456 ~ 18012488 (+) False LOC120556657
XM_039797078.1 mRNA downstream 179587 18158189 ~ 18172130 (+) True rad54l2
XR_005638976.1 other upstream 38475 17904698 ~ 17926887 (+) False wnk2
XR_005639081.1 other upstream 71942 17893293 ~ 17893420 (+) True LOC120558252
TU53107 other upstream 356146 17607930 ~ 17609216 (+) True G39581
TU52841 other upstream 767145 17193221 ~ 17198217 (+) False srsf3b
TU53438 other downstream 211013 18189615 ~ 18193926 (+) False tusc2b
TU53439 other downstream 211013 18189615 ~ 18193926 (+) False tusc2b
XR_005639014.1 other downstream 237104 18215706 ~ 18226039 (+) False LOC120557740
TU54005 other downstream 1346227 19324829 ~ 19326625 (+) True G40164
XR_005638959.1 other downstream 1638579 19617181 ~ 19632012 (+) False LOC120557344

Expression Profile