RNA id: XM_039797928.1


Basic Information

Item Value
RNA id XM_039797928.1
length 2664
RNA type mRNA
GC content 0.58
exon number 16
gene id pcif1
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 44546034 ~ 44566401 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTGGTCCCTGTAAAGATGTCTGAGCAGGCGGGGAGGGAGCGGAGCGGAGGACCCGAAACAAACGGACAGAAGCCGCGACTCTCCGCAACTTAACCGGTCAAGGTAGGTGATGTGTTTCTGACGAGCTGCGGAGATGTCCAATGACAGCCAGGGATCGGTGAAGGGGGAGGCGACCATGACAGCGTctccctctggctccacctCCTCTCAGGACCCGCCCCTTTCCCCTTCCACCACCGCCAAACCACCGGAGCTCCCAGatGAGTTGGTCCAGGCTGGATGGTCTAAGTGTTGGTCTCGGAGGGAGAACCGACCGTATTACTTCAACAGATTCACCAATCAGAGCCTGTGGGAGGTGCCGGTGCTGGGCCAGCATGATGTCATAtctgATCCTTTAGGTCTGAATGCGGCGCCAGCAGAGGGTGGACCTGGAGAAGGTAACCTTGGTAATggtcagaggaagaggaggatctCTGAGGAacagggggcggggcttaacagcATCAAACGAGTCAagGCGGAGCCGACAACGCCCATTTCTCCCAGCACGCCCGGCGCCAAACAATGGAGCTCTGCCCCTGAGGACAAACTGACCCTGCCGGCCACGCCCACAACTCCAAGCCCCGCCCCCGCACCCTACAGACCAGCTGTGATCTACTGGGATCTGGACATCCAGACCAACGCTGTGATCAGAGagcacccccccacccaccacctGCCCCCCCACCCTGAGATCGAGCTGCAGAGAGCGCAGCTCGTCACCAAACTCCGCCAGCACTACCACGAGCTGTGCCACCAGAGAGAAGGTATCGATCCTCCGCGGGAGTCGTTTAACCGCTGGCTGCTGGAGAGGAAGGTGGTGGACAAAGGTCAGGACCCGTTACTGCCGAGCGACTGTGACCCCGTCATCTCACCGTCCATGTTCAGAGAGGTCATGAACGACATTCCCATCAGattGTCTCGTATCAAGTACAAAGAAGAAGCCCGGAAGCTGCTGTTTAAATACGCTGAAGCTGCCAAGAAGATGATTGACTCTAGGAATGCGAGTCCAGAGAGCAGGAAGGTGGTGAAGTGGAACGCCGAGGACACCATGAGCTGGCTGCGCAGAGATCACTCCGCCAGCAAAGAGGACTACATGGACCGTCTGGAGCACCTGAGGCAGCAGTGCGGTCCTCATGTCACCGCTGTGGCCAAAGACTCGGTGGAGGGAATCTGCTCTAAGATCTACCAGCTGTCTGCAGAGTACAGTCGCCGGCTGAGGCAGACGCACCTGAGTCTGCTGCAGGACCCGCCCActacagAGGTGTGTGCGTCCTCCCAGCAGTCCCGGCTGGTCTACTGTTACCCGGTGCGTCTGGCCATCCCGTCGCCGCCGCTGCCTCGAGTCGAGCTGCACTTTGAGAACGACATGGCGTGTCTGCGCTTCAAAGGAGAGATGGTCAAACTCAACAGAGGACACTTCAGCAAACTGgAGTTGTTGTACAGATACAGCTGTATAGACGACCCGCGCTTTGAGAGGTTCCTGCCCAGAGTCTGGTCCCTCCTCAAGAGATACCAGGTGATGTTTGGCAGCGGCGCCAACGAGGGGACGGGTCTGCAGGGGGCGCTGCCAGTGGCGGTGTTCGAGGCGTTGGTCCGACAGTTTGGAGTTTCCTTCGAGTGTTTTGCTTCGCCGCTCAACTGCTACTTCAAACAGTTCGGCTCCGCCTTCCCAGACACAGACGGCTTCTTCGGATCCAGAGGGCCGTTCCTGTCTTTCTGTCCAGTCAGCGGCTCGTTTGAAGCAAACCCTCCGTTCTGTGAAGAGCTGATGGATGCCATGGTGGCGCACTTTGAGGGCCTGTTGGAGAAGTCCTCTGAACCTCTGTCCTTCATCGTCTTCGTCCCTGAGTGGCGTGACCCCGTGACCCCGGCTCTCACCCGCATGGAGGCGAGTCGCTTCCTCCGGCACCAGCTGACCATCCCGGCCTACGAGCACGAGTACCGCTCGGGCAGCCAGCACATCTgcaagagagAGGAGATGTACTACCGGGCGGTACACGGTACTGCGGTCCTCTTCCTCCAGAACGATGCTGGTTTTGGGAAGTGGGCTCCGACTGCGGAGCGTCTGGCCGAACTGATGGCGGCGTACCGGCCCTCCACCTCCCGCCCCTCCACCCTGTCCTCTCCTGGCCCCGCCCCCGTTGCTCCTGGAGACAAAGACTCCACCTCCAAGGCAGCTGACATGACGCAGAGCTCTGTGATGTCACatgacgacaacaacaacaacaacaacaacaacagcagcagcagcagcagcagtagtagtagtagtagtagcagtccCCAAGACAAGATGGCCGCCGTGTAGAGAGGAAACGGTGTCGGTCCAGATTGTCCCTCACCAGCACCTGTAGCACACCCTCCGCTTCTGTCGACACCCACAATGCTGGGCCCAAGTTAACCCTTTCTCCCTTCACAGCGGCTCTTCTGATTGGTCGAGAGCTCTTTCTTTAAACCTGCAGCGACAATAACACAAACCTCTTCATTCACCTGTGATGTCGCCTGTGATGTCACTGGAGGACCTGTGATTGGTTAACAAGGCAGCTATCGTTTCTATTGGACTCGTGTTTCTGGAGAGAGTCGGTCTGAAGCCCCGGCACACCGAAGAGGCCGGCGGTTTG

Function

GO: NA

KEGG:

id description
K17584 PCIF1; phosphorylated CTD-interacting factor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61095 lncRNA upstream 77043 44400478 ~ 44468991 (+) False G45635
TU61094 lncRNA upstream 142859 44400446 ~ 44403175 (+) False G45635
TU61088 lncRNA upstream 142859 44400478 ~ 44403175 (+) True G45635
TU61098 lncRNA upstream 155833 44361162 ~ 44390201 (+) True G45636
TU61362 lncRNA downstream 147772 44714173 ~ 44714690 (+) True G45831
TU61348 lncRNA downstream 175874 44742275 ~ 44744790 (+) False LOC120557302
TU61402 lncRNA downstream 240309 44806710 ~ 44807403 (+) True G45863
TU61415 lncRNA downstream 257127 44823528 ~ 44824784 (+) True G45873
XR_005638908.1 lncRNA downstream 273661 44840062 ~ 44841232 (+) True LOC120556889
XM_039797932.1 mRNA upstream 805 44533407 ~ 44545229 (+) True zgc:77375
XM_039797933.1 mRNA upstream 12725 44527371 ~ 44533309 (+) True isy1
XM_039797336.1 mRNA upstream 35875 44500044 ~ 44510159 (+) False LOC120557218
XM_039797337.1 mRNA upstream 35875 44500051 ~ 44510159 (+) True LOC120557218
XM_039797338.1 mRNA upstream 37552 44500044 ~ 44508482 (+) False LOC120557218
XM_039798855.1 mRNA downstream 2460 44568861 ~ 44575579 (+) True LOC120558028
XM_039798856.1 mRNA downstream 10557 44576958 ~ 44580943 (+) True ube2c
XM_039799169.1 mRNA downstream 53881 44620282 ~ 44625600 (+) True snrpb
XM_039798361.1 mRNA downstream 80929 44647330 ~ 44664201 (+) True ctsa
XM_039798363.1 mRNA downstream 104188 44670589 ~ 44708952 (+) True ralgapb
TU61241 other upstream 46738 44495576 ~ 44499296 (+) False tsen2
TU61239 other upstream 51315 44488999 ~ 44494719 (+) False tsen2
TU61117 other upstream 138585 44403903 ~ 44407449 (+) True G45647
TU61091 other upstream 184666 44360786 ~ 44361368 (+) False G45635
TU61017 other upstream 588861 43956827 ~ 43957173 (+) True G45577
TU61350 other downstream 158406 44724807 ~ 44742195 (+) True LOC120557302

Expression Profile