RNA id: XM_039797961.1


Basic Information

Item Value
RNA id XM_039797961.1
length 4459
RNA type mRNA
GC content 0.41
exon number 13
gene id camk1b
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 13219343 ~ 13264340 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACAGATTCCGTACGAGAGCGCTCCGAGTTGTAGAGACAGACGGACGGACACAGACACGGCCGTTGGACCTTACTGACTGCTACATTTCAGGAATGGGAAACCATATTGTCTTTGACCGTAACAACAAGAAGATGCCACTGGGTCACGATTGCCATGCCTGGAAAAAGAAGACCACAGATGTGAAAGATCAGTATGACTTCAAAGAGATCTTGGGAACggGAGCTTTCTCTGAGGTGGTCCTGGCTGAGGAGAAGGGTACCCAGAAATTGGTGGCTATCAAGTGTATCCCCAAGAAGGCTTTAGAGGGCAAGGAAAACAGCATTGAGAATGAGATAGCAGTCCTGCACAAGATCAAACACGCCAACATTGTATCTCTGGAAGAGATATTTGAAAGTAAATCACACCTCTACCTTATCATGCAACTGGTATCTGGCGGAGAACTCTTTGATCGTATCATAGAGAAGGGCTTCTACACGGAGAAAGATGCCAGTAAGCTCATTCAGCAGATTCTGGATGCCGTCAAATACCTCCACGACATGGGCATTGTGCACCGTGACCTCAAGCCAGAGAATCTGCTGTACTACAGCATGGATGAAGACTCCAAGATCATGATCAGTGACTTTGGTCTGTCTAAGATTGAGGGCTCTGGCAGTGTGATGTCAACAGCTTGTggaacacctggatatgttgCCCCTGAAGTGTTGGCTCAGAAACCCTACAGTAAAGCAGTGGATTGCTGGTCTATTGGTGTCATAGCCTATATTCTGTTGTGTGGTTACCCTCCGTTCTACCATGAGAATGATGCCAAACTGTTCGAACAGATCCTGAAGGCAGAATACGAGTTTGATTCTCCTTACTGGGATGATATCTCTGATTCAGCTAAAGACTTTATAGTCCACCTGATGGAGAAAGACTCCAACACACGTTACACCTGTGATCAGGCTCTGCAGCACCCCTGGATTGCTGGGGATACTGCTCTGGATAAGAACATCCACGAGTCTGTCAGTGCTCAGATCAAGAAGAATTTTGCTAAGAGCAAGTGGAAGCAAGCATTCAACGCCACAGCAGTGGTCCGTCACATGAGGCGTCTCCAGCTGGGCACCAGCCACGAGGGACCCAACCCGCCCCTGGCCAGTCCGTGCCAAACTCATCTGCTTGAGGAAGGAGCAGatGCTTGTTGCGAGGGAGGATGCTCCCAGAACCTCGACGGCGGAGCTGACCCCCTGTCCAACTGCACCTACCGCTGCCACCCAACCAGCAGGGTGTGATCCCTGCACCTGCTCCACTTACTTGCCTAATCAATCCCAGTGACTTTCCAAATTTTACCCCCTCGGTGGAACGGGAGGTACCATCTCCCCCCTTATCTGGTTAGGAATACAGCGTCATTCCAACCTCTCGCCTGCAGGGGGAGCAAGTCTGTCCAGGCTGAGACGGAAGACCTAAAATGGGATGAAAGGAGGAGTAGGGAgacttgatgatgatgatgatgcaccGGAGGATTACTTTTACAGACTGGGGTGGTAGTTTGGGATGAGTTAAAATGGGGAGAGGATAcaaaggaaggaggggaagatAACCTCCTCCACCAGCATGTCAGGGGGGATTGTTTTTTGCTGAAGCAGGACAGAGCTCGTTGAACACTGTTTTTACTCATTTTTGGTTCAgtctgtctctttgtttgtttgtttttgtttattgttttatacatatatatatatataaatatatatttgtgttgtctttttaaCCTCCTACTGTGGAGTGTAAATCCAGAGACAATATCTGCATGATGAGGAGAGCGTTTCCCCATGCATGTTTTGTTATCTTAAGAGATATACcctgttgcagaaatgcagTATCACAGTACAATGCAAATGATGGAGTGTTGCGTGCAAAGTTGCTAAGGAATAGAGCATTTTGATGCGTTGCAGTATTTGAAATGAAATTGAGTCAAATCTTGTAATTTTTTCTGATCTGCATTCTATGTCTTTAAGTCATGCTTTCAGACAATCAGTAAGAATAGTTTATGCAATGAAAACTCCATATATGGACTATGTAGCCTTCCTTGTGGCGATATAGTGTTTCCATGCAGCGGTTAGGCTTCTCCCTTCTCTTTTTTCAACCCCAACCTCTTTAACCACTTGAGCACAGGGATATATCTTGTCTAAGGTGCCTTTAGGATATACAGTATGATGAGTTTATTTTCAGGTAGcttctgaaatgttttgtcaaAGCATAGACTCTTTCAGTCACTCCATATTTTGTATGTAtcacattttaaactttaaaatgcaGTCATCATTACAATATGAAACAATAATATTGTTAAAGCCTTTCTGGAGAGCTTAATcaggattattttcaaaaagaatCCGTCAAACACATGTTTTTTCAgaattattattagtatattGCCAGCTCTCTCAAATACATCAACACATATAAAGGAACTGTGTTGATGTATTTCAACACAAATCCTATAGTAACTTTTATGAAAGAAACAGCATTTGCAAACCAGAAAAGGCATTGATCAGTGTGCTTAGCCATACTTGAGACTAGGCTGATTTAGTAGGATTAAGTATGTTGTGtgaatgcaaaaaaacaaaaaagactgCAACCAAAATATGATATGCATCTGTCACCATGTACTGTAATCGTACCCTCATTCCTatccttttctttttacattattttacagaCTCATGTCCTCAACATGCAGCCTGTTTAGAAAGGAAACCTGGATTAAAAAATGTGAATATGCATCAGATTGACTCGCTTCATCTATGCTGCACATCCACCGGTGTTTTTTATGGTTGTGTGTGCATGAAGGGTACAAACTCTGTATTCATTTTCCATTCattcacctctttttttttttttttaaacagacaaACTTATAGCAGGGTTTGCTCTTTTACAATGTAAATTCTTTAGAGGAGAATGGTGCTCAGACTGTAAGATGTAGAGGAGCTTAATGCACATTTGTTTGAATCCTCTGTAATTCATTTTGGACTGCCCTAGATGGCTCACAGATCTCCACTAAGGCAGTGAAAGTGATGCTGAGATCTTGCACCGACCATAGCTTCATCCATCCTCTGATTTCATTGTCCTGTCCTTAACAggatcacattttctttttaaccgtttctttttctctctgataCAACCATATACACATTCGGTACTGATGTGATTAGCATGATGTAGCTTAGAATTTGTCAAATCCCATGATCAACAATGAGTAGTATGTACACTTCTTGTGATAATGTAACAGATGCCATGAGATGAGTGCTTTTAAAAGGAGAGATTTTGTCAGAGGTTTTACTCTTTTAGCAAGTTAAAAATTCTCTTCAAGTTCAATGTGCTGCTTCAAAGTCTTTGAGCTTTATTCTGCGTTCCTAATTGGATAGGCGTTGTAGTGTGGTGACTCCAAACTGTAAAGCGTAGATAAAAGATTTTTTAATTTCTGTGATTTTCAGTGTGAATTGTTCGTACTTCATGAATTACTGTGACAGAGAAAGACCCTAACAAGCAGAGGAAAGCTGAGGCATGGTGGCGGTTGTTGTCCTCAGTCTTGTCATGTTGGCAGACTGACAATATCACAATTAATCTtctgataataaaaacaactccGCTAATTTGACATATAGCCACAAACATTCAGTCATAAATCTCCTGTAGTCCTATTTAGCTCCTGTAATCTGCCtactaatgattcattttaatgtattaatatactgtacaaaGTTTTTTACATACTTTGAATTAGCACACTTAATCCTAAAAGTGCTCAAAAATGATTCCCAAAAACCCTAAATGAAAAACTTATTTGTAGGAAAAAATCTAAAGATATATTAGAGAAGTAAAAGAATTTTGTTAAATTCACTTTGTTATAATTGAGCACTGTGAGTGAGCATTGAACCACCAAACCTAACAGAGAAATCTCTGGATGTTTGTTCTTGTGCTGTTCTTTGCTGAGGCAACGAACCTGGaaactaaatatttttacattcCAGTGCAATGAAACAAATGACGATGAAATACATAACCAAGTAGTATCCCATTACCTCACCACTCAACCACCTTGGCAGGAAAATAGCAGGAGTGATATGacatactgtaggcctacatacaTTTCGTTCCTGGAGTTTACAATGCATCAGCCAGAAAGAATTCAATGATTTGTGTGAAGGTTTCTCCTTTGATCGCTCATTAACCACTTGTAGAGAATGACCAATGTGTGATAACattgttaaataaatatgttgCCTTTTAAGAAATGCTGTTTTGGGCTACAGTGCGCTGTatacaccatagactgtaaaaataagtaTACATAGATGCAGTGCATCATGGGTTGTTGAAAAGTGATTACTGCTCAGTGTGAAAGCCAGTGACTTGTGCTTGAAACAGATTTGTGAGTGAAATGCACATTAAATTCCCTGCTATGCATTATGAA

Function

GO: NA

KEGG:

id description
K08794 CAMK1; calcium/calmodulin-dependent protein kinase I

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51006 lncRNA upstream 102772 13115654 ~ 13116572 (+) True G38001
XR_005638901.1 lncRNA upstream 139457 13075419 ~ 13079887 (+) True LOC120556864
TU50984 lncRNA upstream 146519 13071974 ~ 13072825 (+) True G37980
TU50982 lncRNA upstream 147474 13070171 ~ 13071870 (+) True G37978
TU50974 lncRNA upstream 154978 13063334 ~ 13064366 (+) True G37970
TU51049 lncRNA downstream 32036 13296376 ~ 13303207 (+) False vamp3
TU51054 lncRNA downstream 41091 13305431 ~ 13312141 (+) False per3
TU51065 lncRNA downstream 55344 13319684 ~ 13372351 (+) False mdm4
TU51173 lncRNA downstream 192589 13456929 ~ 13488836 (+) False tfeb
XR_005638907.1 lncRNA downstream 511441 13775781 ~ 13777150 (+) True LOC120556887
XM_039796891.1 mRNA upstream 11088 13205469 ~ 13208256 (+) True spcs1
XM_039796883.1 mRNA upstream 24443 13171393 ~ 13194901 (+) True gnl3
XM_039798418.1 mRNA upstream 158569 12925713 ~ 13060775 (+) True cpne5b
XM_039796317.1 mRNA upstream 311409 12825516 ~ 12907935 (+) True kif21b
XM_039796937.1 mRNA upstream 409554 12789348 ~ 12809790 (+) True srpk1b
XM_039796323.1 mRNA downstream 32079 13296419 ~ 13303615 (+) True vamp3
XM_039796569.1 mRNA downstream 41075 13305415 ~ 13329332 (+) True per3
XM_039797210.1 mRNA downstream 77560 13341900 ~ 13347042 (+) True psma5
XM_039797207.1 mRNA downstream 88728 13353068 ~ 13364340 (+) True LOC120557160
XM_039797208.1 mRNA downstream 88892 13353232 ~ 13364340 (+) False LOC120557160
TU51031 other upstream 11086 13205484 ~ 13208258 (+) False spcs1
XR_005639080.1 other upstream 26024 13193247 ~ 13193320 (+) True LOC120558251
XR_005639082.1 other upstream 27433 13191778 ~ 13191911 (+) True LOC120558254
TU50929 other upstream 361931 12825529 ~ 12857413 (+) False kif21b
XR_005638946.1 other upstream 478296 12735867 ~ 12741048 (+) False b3galt6
unassigned_transcript_200 other downstream 21899 13286239 ~ 13286311 (+) True trnar-acg_15
TU51060 other downstream 101214 13365554 ~ 13368289 (+) False mdm4
TU51174 other downstream 192589 13456929 ~ 13528319 (+) False tfeb
TU51331 other downstream 962875 14227215 ~ 14233525 (+) False LOC120557956
TU51384 other downstream 1071049 14335389 ~ 14337760 (+) True LOC120557952

Expression Profile