RNA id: XM_039797990.1


Basic Information

Item Value
RNA id XM_039797990.1
length 2651
RNA type mRNA
GC content 0.43
exon number 5
gene id si:ch211-161c3.5
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 19877422 ~ 19888732 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACAGCTGAGAGAGCCAACCGCATCTATCATCTTGAAGCCATTAGACCAATTGGAGGTTGGCGGGGGAGGGCGGACTCTGTTTGCAGCATCCCTGAAGCAGCCCCTGTTGTGTGAAATACAAGAAAGGGCAAGACCGGGGGACGAAACGAAGAACCAACCGGAGAACGGGAAGGGGATATTGTGGAGGCTGCCGGGATAGGGTAACTCTGGTGTGTGGAGTCCATCTTCACAGAAAGATGGCTGTTTTGTCAATGTAAACAGCCTGTGCAGTACCTGCATTGCTAAAGGGGGAAgcaaaagaggaggaggggcaGCCGCTGGAGGAAATGCTGCCTCTTCCAATGAAATTTTACCCTCTCTAGCTACCCCGGCCTGCCGCAGATCACATCTGAAGTCATGCCTGTTGTATATTAAGTTTATATCATCCAGCTCATATGGCCAAAGCATCATTAATGCCTCAGCAGACCCCACACCAGAGGGAAAGACACCTGCGATGACCATGAGACGCACTAGAGGCTGAGCGATACATCAACATCCACACACAGATTGAAAATACATCCTTCAGTTGAAACTGTTACACCTGACCATGGCTGTGACTGCAGCTGAGACAACTACAAGTTTTCTCTCCACAACTGCCACGACCACCCCACTCCCCTTTCTCTTAACGAGCAAAAGCGCTAGAGACAATGTCACCTCCAGAACATCATTAATGACTGTTACTATAACAACAAACGAGACCAGCTTCAACGCCACGACGTTTCCGAAGGCGGTGATCGAGGGCTCGGGAATGGGAATGGTGCTCGTACCCTTTGGCATCATCACTGTCATTGGCTTGGCAGTGGCAATTATGCTGTATATTCGGAAACGGAAGCGGTTGGAGAAGCTGAGGCACCAGCTTATGCCCATGTACAATTTTGACCCGGCTGAAGAACAAGATGACCTGCTGGAACAGGAACTACTGGACCACGGCCGGGAAGGCAGCCTCACAGGTCCCAATGCAAAGTTTTGACAATGACATAATGGTAACAGGAAAACATGGTAAAGTACCACCTGAGTGTCTTTTGAACCATCTCTTTTAAACCTCTGTTTTCCCCACAATCCTCATTCTTTCATTATTTCAGTATCTCAAACAATAACCAGTAGGTTAGATGTTTGTAATGTGTAATGGTTGTCATTTCATATAAACTAATCTATATCAAAGTATGCTAACAGAGACACAAACCAACACAATCAAAGTCTTTACCTTTGAACCTACATCTATATTATCTTTCATCCTTTCCTTTGTGTTCCTTCAACTTAATACTTTAACGTCACATTTTCCAGGGGCCACATgcacaaaaagtaaaaagtatgcaaAACACcacctttttcattttcaaataatCAAATCCTTCCACTCATGTGTTTAATACCATCGCATGTTGAAGACTTCCAGTGGTAGAGAACATTCAGAGTGATGTGCTAAATTATAAATgcagttttattaatttttaaatgttttgttccCTAGCCAAACTCTCATAAGACGAACGTAAGCTCACAAGCTCAAGGCCCACTTACTGGCTTTTTCCATagctttcaactgcatctcaCAAGTTGCAACTGAAACAAACTGAGCAAACGTCATTCATTGATGAAGTACATGTAATGCCGTTGAAAGCATGCAAAATAGCTAGAAAGTAGACCTTGGTTAAGATTATTTAGTCAAACCCTTGTTGAGCATTGCATTGCAAAACAATGATGTGTCCATCAGCACTACAATTATCAACCAATTTTTAGAATGCAGGTTGGCATTTTTAATAATACTGGTGAATTTATTACATACCCTAAACAGTTTGCATACTATGGTTTTAGACATGTGGCTCTGGTTTAAGTAATCAATCACACTCTAAATCTGTAGGTCGATTTAGCTGTTTTGATGGTcctaaaatgaacaaaacagaATGTCGCACTGGAACAACTAGCTGTCATCACTATTACAATCCAAGGCTGGAGTTAATGTCACTAACAGTTTTATCTCCCATCCGTCCTGCTGCCCATCTCCTCTGCAGACTCTCACAACCTCCCAGGGGACCATGCAGAGGCCCAGTCGTCTGGTCTTCACAGATGTAGCCAAAGCTCTCAACGCTTAACAGCTCTCTTCCATTAGTTGATCCATCGATATACAGACTGTCTCTCAGGAAGGAAAACAAAGGGACAACTGGACTATTTTTTGGAACAACTGGAGCTTTGGTGAACGTTTTCCTCACTACCACGCAGTACCTGAAATGGGCGTGTTtttcaacaataacaacaaacaaacgTAGGGTGCATGTATCATAAGGGAGCATAACGGGAAGCTTCACATATAATCTTGCACTGTTGTCATTTGGCGCACAAATGCAGTGCAATGCACTATTCTTGAATCATGTTGTGTCATTGCTGTTAAAATGTTTGGTAGCTTGTCAGTGAAGTTATTCTGAGCTTCAATATCTACTTCCATGTTTGATAAGAGAGTGTTATACTGATTTTGTGTTCTTTCGTCTCTGACAAGCTTGAACTCCGGATGTGTTACCATCCTTAAGTGAACTGTCCCTCTccattttgtttcttctttatTGAGCAATGAAGGATTGTTTCCGTCTGTATACATTAAAACCAATTTGAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54169 lncRNA upstream 121104 19761173 ~ 19762498 (+) True G40284
TU54153 lncRNA upstream 142214 19739721 ~ 19741388 (+) False sema3fa
TU54155 lncRNA upstream 142214 19739815 ~ 19741388 (+) False sema3fa
TU54057 lncRNA upstream 435336 19442047 ~ 19448266 (+) False slc38a3b
TU54235 lncRNA downstream 179546 20068278 ~ 20121870 (+) True G40339
TU54258 lncRNA downstream 258003 20146735 ~ 20146983 (+) True G40352
TU54264 lncRNA downstream 268122 20156854 ~ 20157525 (+) True G40357
TU54370 lncRNA downstream 338605 20227337 ~ 20227816 (+) True G40433
TU54379 lncRNA downstream 377108 20265840 ~ 20266366 (+) True G40442
XM_039797980.1 mRNA upstream 26973 19851586 ~ 19856629 (+) False cenps
XM_039797979.1 mRNA upstream 32073 19849826 ~ 19851529 (+) True rbp7b
XM_039797973.1 mRNA upstream 36248 19841400 ~ 19847354 (+) False h6pd
XM_039797269.1 mRNA downstream 29157 19917889 ~ 19923549 (+) False abhd14b
XM_039797267.1 mRNA downstream 29157 19917889 ~ 19923269 (+) True abhd14b
XM_039797268.1 mRNA downstream 29159 19917891 ~ 19922804 (+) False abhd14b
XM_039797440.1 mRNA downstream 272637 20161369 ~ 20167791 (+) True hemk1
XM_039797437.1 mRNA downstream 298923 20187655 ~ 20195749 (+) False glyctk
TU54184 other upstream 24261 19851548 ~ 19859341 (+) True cenps
XR_005638959.1 other upstream 251590 19617181 ~ 19632012 (+) False LOC120557344
XR_005638958.1 other upstream 251596 19617181 ~ 19632006 (+) False LOC120557344
TU54005 other upstream 556977 19324829 ~ 19326625 (+) True G40164
XR_005639014.1 other upstream 1657563 18215706 ~ 18226039 (+) False LOC120557740
XR_005638939.1 other downstream 29157 19917889 ~ 19923549 (+) False abhd14b
TU54259 other downstream 259372 20148104 ~ 20148690 (+) True G40353
XR_005638988.1 other downstream 2061644 21950376 ~ 21991799 (+) False itga7
TU55524 other downstream 3860178 23748910 ~ 23760951 (+) False cbfa2t2
TU55525 other downstream 3869026 23757758 ~ 23760951 (+) False cbfa2t2

Expression Profile