RNA id: XM_039798001.1


Basic Information

Item Value
RNA id XM_039798001.1
length 784
RNA type mRNA
GC content 0.47
exon number 6
gene id arpc4
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 16161960 ~ 16167138 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCGAAATAGGAAGCAGAGTTAGTTCCGTTATGTTCACGGAAAAGGAGAATGCGGAAAAGCCCTCATaagtgtaacgttaacgttagctacttccGCCTTTAGCCGCCTCTCATCACACAGAGAAATGACGGCAACCCTGCGCCCATATCTCAATGCAGTTCGTGCGACCCTGCAGGCCGCCCTCTGCCTGGAGAATTTCTCCTCGCAAGTGGTGGAGAGACACAACAAGCCAGAGGTGGAAGTACGGAGTAGTAAAGAGTTGCTTCTTCAGCCTGTGATCATCAGCCGTAACGACAAGGAGAAAGTTCTGATTGAGGGCTCCATCAACTCTGTCCGAGTCAGCATCGCTGTCAAGCAGgcagatGAGATTGAGAAGATTCTGTGCCATAAGTTCATGCGTTTCATGATGATGAGAGCAGAGAACTTCTTCATCCTGAGGAGGAAACCAGTGGAGGGCTATGACATCAGTTTTCTCATCACCAACTTTCACACAGAGCAGATGTACAAACATAAACTGGTGGACTATGTCATTCATTTCATGGAGGAAATTGACAAGGAGATCAGTGAAATGAAGCTGTCGGTCAACGCCAGGGCTCGTATTGTTGCAgaggagttcctcaaaaatTTCTGAAAGAGAGGAAAACCTGGAAATACATTCCTTTCACCAATCTTGGCCGTCACTGTGGAGCTTTCACATCACAGAGCTGAGAGGAGACAAAATCTGATTAGCCAAGACAAGTTGAGAAACATAAGACGTACAATAAAGATGTACAGGCCAATGGA

Function

GO:

id name namespace
GO:0034314 Arp2/3 complex-mediated actin nucleation biological_process
GO:0005885 Arp2/3 protein complex cellular_component

KEGG:

id description
K05755 ARPC4; actin related protein 2/3 complex, subunit 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52394 lncRNA upstream 3598 16156713 ~ 16158362 (+) True LOC120557902
TU52395 lncRNA upstream 3598 16156713 ~ 16158362 (+) False LOC120557902
TU52396 lncRNA upstream 3598 16156713 ~ 16158362 (+) False LOC120557902
TU52400 lncRNA upstream 3598 16156713 ~ 16158362 (+) False LOC120557902
TU52402 lncRNA upstream 3598 16156713 ~ 16158362 (+) False LOC120557902
TU52421 lncRNA downstream 28241 16195379 ~ 16195784 (+) True G39052
TU52459 lncRNA downstream 67876 16235014 ~ 16251725 (+) True G39076
TU52514 lncRNA downstream 336300 16503438 ~ 16510185 (+) True G39113
TU52517 lncRNA downstream 350398 16517536 ~ 16522337 (+) False G39116
TU52544 lncRNA downstream 385546 16552684 ~ 16556205 (+) True G39134
XM_039798595.1 mRNA upstream 4451 16149125 ~ 16157509 (+) False LOC120557902
XM_039796384.1 mRNA upstream 101630 16049678 ~ 16060330 (+) True eefsec
XM_039798371.1 mRNA upstream 120747 16039813 ~ 16041213 (+) True mustn1a
XM_039798370.1 mRNA upstream 122686 16035974 ~ 16039274 (+) True rft1
XM_039798645.1 mRNA upstream 126998 16016980 ~ 16034962 (+) True prkcda
XM_039796553.1 mRNA downstream 395727 16562865 ~ 16566395 (+) True emc3
XM_039796552.1 mRNA downstream 399563 16566701 ~ 16578215 (+) True usp4
XM_039796555.1 mRNA downstream 417274 16584412 ~ 16605415 (+) False fancd2
XM_039796556.1 mRNA downstream 417464 16584602 ~ 16605415 (+) True fancd2
XM_039796558.1 mRNA downstream 417464 16584602 ~ 16605415 (+) False fancd2
TU52330 other upstream 111530 16049905 ~ 16050430 (+) False eefsec
TU52306 other upstream 195853 15965414 ~ 15966107 (+) False ccdc174
TU52135 other upstream 514109 15645511 ~ 15647851 (+) True G38834
XR_005638919.1 other upstream 1287501 14865059 ~ 14874459 (+) True calcoco1b
TU51738 other upstream 1345524 14808352 ~ 14816436 (+) True G38517
TU52503 other downstream 266100 16433238 ~ 16435229 (+) True G39104
TU52524 other downstream 350398 16517536 ~ 16543580 (+) True G39116
TU52801 other downstream 944975 17112113 ~ 17119890 (+) True G39351
TU52832 other downstream 1026083 17193221 ~ 17198217 (+) True srsf3b
TU52833 other downstream 1026083 17193221 ~ 17198217 (+) False srsf3b

Expression Profile