RNA id: XM_039798009.1


Basic Information

Item Value
RNA id XM_039798009.1
length 5664
RNA type mRNA
GC content 0.49
exon number 26
gene id LOC120557555
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 12394585 ~ 12439375 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCAGCACACACGCGGATGAAAGTGAGACTCCCAGCAGTTAGCAGCAGTTTCACCACCGACAATCAGTGAGAAGGAGACGGACAAGTGGAGAGCAGCTTTCGGTGACGGGGGAACAGAATAACTCTTGTATAATCACCGAAACATTTTGAAGTGCCTCGATACAACACCGCGGGCTTATAGCTTTCTGTTTGAAGCTCTGGATAGACAAGTTTGTCCGTCTTTTTTCTGACTATTTCTACCTTAAACTGGCTGTCAGACCCTCCGGTGTCGCATGAAGTTGGAAATGCGCCGTGTTTGAACTTCACCTCCAAACGACCTTTTGATGTCCACAGAAGTCACCTCTGTGCTTCTACAGTTGGCATCAGCTGCAAGTCACGCTCTCGCCTAACTAGTTGTAAGTGGACGTGATCATCAGCAATTAGGTTTCATCATCCATACATGGAGAGTAGCCCATGGACCTAAGTGTGACCCAGAGGTTGTTACATCCAGGCCTAGAGTCGGCCATGCTGGCCCCCGGCCCTCCCTTCTTCCTGGGACCCCTCACCTCACAGCACTGCTCCCAGTTTTCCCAGCAGCACTTGCAGtaTAACATTGAACAAAGACAGATGGAGcaggagaaaagagaagagcTACAACAGCTGACACGAAAGAGTAAAAATGAGCAGAGTGCTGTAGCCAGTCCTCTGGTAAGGCAGAAACTTCGGGAACACATAATTATGAAGAGCCAGCCCAGCCATGACAGGGTCACTCCCAACCACAGCAGTCCTACACCAGGATACAgGCTCCCGGTTCCTGACATGTCCCCAAAGTCTCAGCCTACAGCCTGTGACCAGCGTAAAGACCTCGCCCTGCGCAGGACAGTCTCTGAGCCCACTCTGAAGTGGAAGTTAAAGAAGCTCATCAGTACAAGGCCAAACCCGCTGCAGCGTAAGATCAGTGCCCCTCCCGCTGTCAAGCACAGGACAGAAACTTTGGACTCctctcccagcagcagcagcagcaacccaGCTTCAGGGTGCAGCTCACCAAATGACAGCCTCCATTCGGACAACGGGCACCTCCCGCTGGCTCATGAGGCACAGAGGTTGCTGGCCCATTTTACCTTGCCTCCCAACCCCACTGCCATGCCCAACATCACTGCTGGACTACCTGCACATGCTGACCTGCGAGTAGCCAGACCGTTGGCAGTACCTGCTCTTCACCAGGTCTACCTGCCCCTGGAAGGATGCAATCCAGCCCTGGATCAGCGCCTGCAGCCTGTGCTCATACTGGAACCACACACCGGACTGGTGCACTCCCAACTTGTCTCTTTTCATGGTTTGAGCTCCACTcctctgctgcagcagcagcagcagcctcaccTGTCCTCCCCCACCAGAAGGGAAGGCGTAGTTACCTTTCCCTCCCACAGACCCCTGGAGCGAACACGCTCCGAGCCTCCGCCCTACAGCCACTCACCCCTTACTCTGCATGCCAGCCGTCACTCACACATCCACCACCATCTGTCCCAGCAATATCACAAGAGCGGGCTGGAGAGGTTCAAGCAGAATGCACACATGAGCAagCTGACAAGCAAGTCCATTGAGAAGCCTCGTCTGACCCAGATCCCATCAGAGGACATGGACCTGGAGGAGATTGGATCAGGATCAGGTTCGGGGCCCGGGTCTGTGTGCGATTCAGAACCGGGCTCTATGTGTGAGGACGGCTACCGCAGGAGACAAAGCACTGCCAGCACAGACTCAGTTTACGACACGGAATCCACTACCTCCTCACGGGACAGCTTGATCGAGCCTTCGCACTCACTCAGTCAGAGGCAGGTGAACCTTAGATCTGGTCTCCAGCTTGACCCCCTGGGTATGCCTGCCCTAATTTGGCCTCACCAGCCTCTAGTTCGAACCCAGTCCTCCCCAGCCTCCACttccctgcctcctcctccacatCCACCCACAGCCATACCTACCCTGTCACTGTCCAGCCCTGCTGCAGATGTCCACCTACGCTTCACCACAGGTCTGGTCTATGATGCTCAGATGCAGAAGCATCAGTGTACCTGTGGGGATAACAGCCGCCACCCTGAGCATGCTGGGAGGGTCCAGAGCATCTGGTCCAGACTGCATGAAAGAGGTCTCAGGAACCAGTGTGagcgcATTCGCAGTAGGAAGGCCACTCTAGAAGAGCTGCAGTCAGTCCATTCAGAGAAACATGTGCTTCTGTTCGGCACCAACCCACTCAACCGCCTCAAGCTGGACAACCGCAAGTTGGCTGGGATCTTGTCTCAACGGCTTTTTGTGATGTTACCATGTGGAGGAGTTGGGGTAGACATTGATACAATCTGGAATGAACTTCACACATCAGTAGCTTCCCGTATTGCTGCAGGATGTGTCACAGACCTGGCGCTGAAGGTGGCACAAGGAGAGCTAAAGAATGGCTTTGCAGTGGTGAGACCTCCTGGACACCATGCAAACCATTCCTCCCCTCTGGGCTTTTGTTTCTTCAACTCTGTGGCCATTGCTGCCAAGCAGCTCCAAAACAAGCTCAACGTCAGCAAGATCCTCATCGTGGACTGGGATGTTCACCATGGCAACGGCACCCAGGAAGCCTTCTATAATGACCCGAGCGTGCTGTACATCTCTCTACATCGCTATGATGATGGCAACTTCTTTCCTGGTAGTGGACATCCCAGTGAGgTGGGTACAGGTGCAGGCGAGGGCTTCAATGTGAATGTAGGCTGGACAGGGGGTTTGAACCCTCCCATGGGTGATGCAGAGTACCTGGCTGCATTCAGaGCCGTGGTGATGCCCATTGCCCACGAGTTTTCCCCTGATGTGGTGCTGGTGTCAGCTGGCTTTGATGCTGTCGAAGGACATGTGTCATCACTTGGAGGCTACAAAGTCACAGCCAAGTGTTTTGGCTTCCTGACCCGTCAGCTGATGTCACTGGCCGGGGGTCGGGTGGTCCTGGCTCTGGAGGGGGGACATGACCTCAAGGCCATCTGTGATGCCTCTGAATCCTGCGTCAGCGCCTTGCTAGGCATGgagGTGGAGCCTCTGTCCCAGTCCGTGTTGGACCAGAAGCCTTGTGAAAATGCTGTCCAGTCACTGCAGAGAGTCATCCAGGTTCAGGGTGAGTACTGGCAGAGTGTGAAGGACTCGGCCGCCACAGTGGATCTGACCTACCTGCAGGCGCAAAGACGGCGGCTGAGACGAGACTCGGACAGCGAGGCCGTCAGCGCCATCGCTTCGCTGTCGATGGGAGCGATCGCCTCTGACAAGAAACAGACACGGCCCGAAAAACTGACAGAGAAAGGTGATTCTATCTGAGGAAAGAGTATCCTGACTGCTGCTTTCAACCAAGTCtatggaaaaacacacacacacacacagacaaagctATGCATTTGGACCATCACTGGAAGCAGATGTCCTCCTCAGTTCGACCACTGTACTCATCACCTCACAAAAACTCCTCCACCAGTGTAACTAGTGGCTGCAGTCTGATTCAAACACACTGAGCAACAACATTCACCTGGGAAACATTCATACGTGACGCCTCCACAGGCTTTTCCTGGTCACTAAACTGAGAAGTGGAAAATAAAGACAACCAGAGGTGAATTCATGAAGGATCTTCACTCTCTTGTAGCATTGGCATGAACACACACTTGACAAAGCACAGCTCTGCAACATTAAACATTCACCTTGTAAATGACTCCCACAAGACCTGCGAGAGACTCCTCGCACTGTTGAAACCTTGAAGgcggggtcaaaggtcacctgGGCTTGCTGGAGCCAATCACTCTGAGCGGAAGGAGTCGTCCCTGCAGGACGTGCCGGTGAAGGAGAGCAGACATATCCTCCGCGTCCCACTATGATGATGTCATTTGTCTGAATGTGACAGAGATCcgatgaaggaaaaaaaaacaaaaaaacaggagCTTCTGAGCGTTTTGCACTGCACCGTTCTGTAATGTGAACTTGACAAGATGGAGGAGACGCAGCCACATCGGCCATGTTGACAATCAAACATCTTGTTCGTTTGTGTTTTTAGTTAATTTCAATATTCTTTCATTTGACGTTTGGCACACATGTTTGTGAATGTCAGCagcaggtttatttttttttgtttaagaatCCAGTAAGAGTGAAGCTACAAGTGACGTCTGAGATACATATGTTTCATATTGTTTTGAATGTCCACATATTTTCTTAAAtcgtcttttttctctttttcttggcCTGTCAGTGGAGCACATGCAGCAAGACTCTATATGGCTGCAGTTATTGTTATGGCTCCCCGGCAGATAAAAGAAGACACAGCAGTCTTTGATGAAGTGCATCTTAAAAGCGTAGACATACTGGAGATGAAGAGCTTATACCTTTAGTCATTGGAGTATCAATATCAGGGGAGAAAGAGGTTCTTTACACATCAGCAAAGACAGCAATCACCCATGATGCTTCAGTACAGCGTGACCACTCAGAAATGATTGTATATGTGACAATGCAGATAAAATTTTGGATGAGACCCATCCAAAGACTTCATGACAATCCCACACTTAAAGTGCACTTCCATTGCCCTCACGATTCGGGGATCACAATGACTTGGGTCTTAAAATCTGAACTTTGATAATGTTTGTTAAGTGGACCAGTGTTTCTACCTGTGGATGAGCATTCCTGCTGTACTttgtaaatttattttaaacttttgttAATAACAAGGACAAACGGATGTGTACTTTGTTCATCTTTGACGTAGCAGCGTTCCGTTTACCGTCAGCGGCGGGGATGTTGTGCTCCCCGGACCAAACAACGACATTTTAGCAGTTAGGATGGAGCAATAATACTGAGATAGTTGAATACCCACACAGTGCAATTGGACACAGGTTAAGCGCAACCAAAGTTTATGAGAACAATGTGCCGTCCCAGGACTGGCATGGCTTAAAGAACTTCAAAGACTTTGAAGAGTTTGtgaatgtttcttttttctatCCAAACAGTTGAACAGCACAAAAAGCACAGGACGGATATATAAACAaattaatttctttaaaaaaaaaaaaaaaaaaaaaaatcttctatTTAGATTATGTGTCTTTGAAGTGCTCTTTGTATGTCTAACATAATTTTGACGGTGCTATGGATTATTCCTTTTTAAGTGCAGTACGTTTGCCAACGTATGTTTCTTTCTTTACGTTGCATTGTGAACGCAACTCAAAACCTGTCAAATCTTTGTTAATgtaatgaaaatgtgaaaacGAAGGACGGTGAGTTTCAACTCCATATCTGTAGGACAATCCGAGTGTAGCTTTGCATAGTTTTACGAGAACATTCATGACAGTAAGCTGACATATCTGATGTCTTATCTTTTGTCTTAATTCATGCAAATGActtatttttgtatttgatCTAAAAAATGTATGTACTTAGAGACCAAATTTTCAGCCTGTGTGCCTTGGAGTATCATGCTGACCAACCTGTGTGAAGGTAGCCTTAACAAACTGGATCTTAGTCAATACTGCAGGCAAAGTCCAGTTTTCTCTTAACAGACTCTCTGACTTATATCTGTACAGTGTACATaatgactttgttttgtttttttgtctgccTTTGTCTTTTCTATTATTTCTGTTTCCAAAAGAAATCCTTAATAAAGGTAAATTACCAAATTCA

Function

GO: NA

KEGG:

id description
K11406 HDAC4_5; histone deacetylase 4/5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50646 lncRNA upstream 15260 12385390 ~ 12385646 (+) True G37729
TU50645 lncRNA upstream 15690 12384991 ~ 12385216 (+) True G37728
TU50642 lncRNA upstream 17171 12383456 ~ 12383735 (+) True G37725
TU50620 lncRNA upstream 100411 12300250 ~ 12300495 (+) True G37718
XR_005638918.1 lncRNA upstream 235261 12152765 ~ 12165645 (+) True LOC120556983
TU50675 lncRNA downstream 10677 12450052 ~ 12450548 (+) True G37742
TU50696 lncRNA downstream 145282 12584657 ~ 12585811 (+) True G37761
TU50703 lncRNA downstream 160065 12599440 ~ 12599671 (+) True G37768
TU50705 lncRNA downstream 164423 12603798 ~ 12606662 (+) True G37769
TU50715 lncRNA downstream 222396 12661771 ~ 12661985 (+) True G37778
XM_039798500.1 mRNA upstream 30260 12339555 ~ 12370646 (+) True LOC120557854
XM_039798492.1 mRNA upstream 69132 12312049 ~ 12331774 (+) False LOC120557853
XM_039798725.1 mRNA downstream 49322 12488697 ~ 12496235 (+) True phf13
XM_039797279.1 mRNA downstream 68638 12508013 ~ 12560180 (+) True LOC120557182
XM_039797281.1 mRNA downstream 68638 12508013 ~ 12560180 (+) False LOC120557182
XM_039797276.1 mRNA downstream 68638 12508013 ~ 12560180 (+) False LOC120557182
XM_039797282.1 mRNA downstream 68638 12508013 ~ 12560180 (+) False LOC120557182
TU50647 other upstream 13731 12386171 ~ 12387175 (+) True G37730
XR_005639029.1 other upstream 122282 12274760 ~ 12278624 (+) True LOC120557851
TU50615 other upstream 145932 12253066 ~ 12254974 (+) True G37714
TU50430 other upstream 595512 11780178 ~ 11805394 (+) True G37597
TU50377 other upstream 1006572 11390739 ~ 11394334 (+) False LOC120557336
TU50865 other downstream 276785 12716160 ~ 12719472 (+) False cdab
XR_005638946.1 other downstream 296492 12735867 ~ 12741048 (+) False b3galt6
TU50929 other downstream 386154 12825529 ~ 12857413 (+) False kif21b
XR_005639082.1 other downstream 752403 13191778 ~ 13191911 (+) True LOC120558254
XR_005639080.1 other downstream 753872 13193247 ~ 13193320 (+) True LOC120558251

Expression Profile