RNA id: XM_039798010.1


Basic Information

Item Value
RNA id XM_039798010.1
length 3639
RNA type mRNA
GC content 0.54
exon number 24
gene id LOC120557555
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 12394585 ~ 12439375 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cACATGAGAGGAAGTGCACGACACAAAAAAGTCAGAGGGTTGTGTCAAGCAGTTGACTGTGACTCCCTCTGTCAGTGCACAGCCGGGCTCCAGCGCTGCAGCACCACTCCCCTGTCAAAGCAGGATCTATCTTCTCCCCCCCGACCCTCCCACCCTGTCTGACTGCGGCCTCTGTGATTGACTGAACTGCTGTGGGAGCACCGAGGGACCTCTCACTGGATGTCAGCGGACAAAACCGTGGACGTGATCATCAGCAATTAGGTTTCATCATCCATACATGGAGAGTAGCCCATGGACCTAAGTGTGACCCAGAGGTTGTTACATCCAGGCCTAGAGTCGGCCATGCTGGCCCCCGGCCCTCCCTTCTTCCTGGGACCCCTCACCTCACAGCACTGCTCCCAGTTTTCCCAGCAGCACTTGCAGtaTAACATTGAACAAAGACAGATGGAGcaggagaaaagagaagagcTACAACAGCTGACACGAAAGAGTAAAAATGAGCAGAGTGCTGTAGCCAGTCCTCTGGTAAGGCAGAAACTTCGGGAACACATAATTATGAAGAGCCAGCCCAGCCATGACAGGGTCACTCCCAACCACAGCAGTCCTACACCAGGATACAgGCTCCCGGTTCCTGACATGTCCCCAAAGTCTCAGCCTACAGCCTGTGACCAGCGTAAAGACCTCGCCCTGCGCAGGACAGTCTCTGAGCCCACTCTGAAGTGGAAGTTAAAGAAGCTCATCAGTACAAGGCCAAACCCGCTGCAGCGTAAGATCAGTGCCCCTCCCGCTGTCAAGCACAGGACAGAAACTTTGGACTCctctcccagcagcagcagcagcaacccaGCTTCAGGGTGCAGCTCACCAAATGACAGCCTCCATTCGGACAACGGGCACCTCCCGCTGGCTCATGAGGCACAGAGGTTGCTGGCCCATTTTACCTTGCCTCCCAACCCCACTGCCATGCCCAACATCACTGCTGGACTACCTGCACATGCTGACCTGCGAGTAGCCAGACCGTTGGCAGTACCTGCTCTTCACCAGGTCTACCTGCCCCTGGAAGGATGCAATCCAGCCCTGGATCAGCGCCTGCAGCCTGTGCTCATACTGGAACCACACACCGGACTGGTGCACTCCCAACTTGTCTCTTTTCATGGTTTGAGCTCCACTcctctgctgcagcagcagcagcagcctcaccTGTCCTCCCCCACCAGAAGGGAAGGCGTAGTTACCTTTCCCTCCCACAGACCCCTGGAGCGAACACGCTCCGAGCCTCCGCCCTACAGCCACTCACCCCTTACTCTGCATGCCAGCCGTCACTCACACATCCACCACCATCTGTCCCAGCAATATCACAAGAGCGGGCTGGAGAGGTTCAAGCAGAATGCACACATGAGCAagCTGACAAGCAAGTCCATTGAGAAGCCTCGTCTGACCCAGATCCCATCAGAGGACATGGACCTGGAGGAGATTGGATCAGGATCAGGTTCGGGGCCCGGGTCTGTGTGCGATTCAGAACCGGGCTCTATGTGTGAGGACGGCTACCGCAGGAGACAAAGCACTGCCAGCACAGACTCAGTTTACGACACGGAATCCACTACCTCCTCACGGGACAGCTTGATCGAGCCTTCGCACTCACTCAGTCAGAGGCAGGTGAACCTTAGATCTGGTCTCCAGCTTGACCCCCTGGGTATGCCTGCCCTAATTTGGCCTCACCAGCCTCTAGTTCGAACCCAGTCCTCCCCAGCCTCCACttccctgcctcctcctccacatCCACCCACAGCCATACCTACCCTGTCACTGTCCAGCCCTGCTGCAGATGTCCACCTACGCTTCACCACAGGTCTGGTCTATGATGCTCAGATGCAGAAGCATCAGTGTACCTGTGGGGATAACAGCCGCCACCCTGAGCATGCTGGGAGGGTCCAGAGCATCTGGTCCAGACTGCATGAAAGAGGTCTCAGGAACCAGTGTGagcgcATTCGCAGTAGGAAGGCCACTCTAGAAGAGCTGCAGTCAGTCCATTCAGAGAAACATGTGCTTCTGTTCGGCACCAACCCACTCAACCGCCTCAAGCTGGACAACCGCAAGTTGGCTGGGATCTTGTCTCAACGGCTTTTTGTGATGTTACCATGTGGAGGAGTTGGGGTAGACATTGATACAATCTGGAATGAACTTCACACATCAGTAGCTTCCCGTATTGCTGCAGGATGTGTCACAGACCTGGCGCTGAAGGTGGCACAAGGAGAGCTAAAGAATGGCTTTGCAGTGGTGAGACCTCCTGGACACCATGCAAACCATTCCTCCCCTCTGGGCTTTTGTTTCTTCAACTCTGTGGCCATTGCTGCCAAGCAGCTCCAAAACAAGCTCAACGTCAGCAAGATCCTCATCGTGGACTGGGATGTTCACCATGGCAACGGCACCCAGGAAGCCTTCTATAATGACCCGAGCGTGCTGTACATCTCTCTACATCGCTATGATGATGGCAACTTCTTTCCTGGTAGTGGACATCCCAGTGAGgTGGGTACAGGTGCAGGCGAGGGCTTCAATGTGAATGTAGGCTGGACAGGGGGTTTGAACCCTCCCATGGGTGATGCAGAGTACCTGGCTGCATTCAGaGCCGTGGTGATGCCCATTGCCCACGAGTTTTCCCCTGATGTGGTGCTGGTGTCAGCTGGCTTTGATGCTGTCGAAGGACATGTGTCATCACTTGGAGGCTACAAAGTCACAGCCAAGTGTTTTGGCTTCCTGACCCGTCAGCTGATGTCACTGGCCGGGGGTCGGGTGGTCCTGGCTCTGGAGGGGGGACATGACCTCAAGGCCATCTGTGATGCCTCTGAATCCTGCGTCAGCGCCTTGCTAGGCATGgagGTGGAGCCTCTGTCCCAGTCCGTGTTGGACCAGAAGCCTTGTGAAAATGCTGTCCAGTCACTGCAGAGAGTCATCCAGGTTCAGGCACTCTTTCTTTTTTCGTCTCCTCATCCCTCCTGCTCACtggccacctctcctcctttaCATCCCTGTCTCCCATCCCTCCCTCCAGccgtcccacacacacacagacagacgcacacacgcactcGGCCGCCCTGGCTCCAATTATCTTCAAACACTTCTCTGGCACACGACCTTCGCAACATCCCCTCCTGATTGCACACAAATGTTATCCCAACCAAATtagattaattaaaaatatttgcAAAGCCACAAGAATGTTAAGCCCATAATTTTGGCCCGGGGTGAAATATATGCAAGTTGCATGCACAGCCAGAACACACACGCTCATAGACGAACACATTTGCAGACACTGATTGATTTGACTTCCACTGTGTGTCACAGGACTCAAGTCTGGAGACCCTGAGAGAACACATTGAATTTAAGTTTACATTTCTGAAATTATCAACATGGATATTTGGACCCCAGGCTGTTTATAAGACAGGCAATGCTTATATTCAGATCAAACAGCTACAACTGGTGGATCAAACACCATGTACTGCTTCTTAATAATGCAGTGCAGGCACTTTCCCTCAAGGAAGCATTCTGAATGAAAACAACACTGGAATACCAACAACTGAGGCCATtaatctttctctctttctcctcccttcctcctctccctctttttcatCTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50646 lncRNA upstream 8939 12385390 ~ 12385646 (+) True G37729
TU50645 lncRNA upstream 9369 12384991 ~ 12385216 (+) True G37728
TU50642 lncRNA upstream 10850 12383456 ~ 12383735 (+) True G37725
TU50620 lncRNA upstream 94090 12300250 ~ 12300495 (+) True G37718
XR_005638918.1 lncRNA upstream 228940 12152765 ~ 12165645 (+) True LOC120556983
TU50675 lncRNA downstream 13326 12450052 ~ 12450548 (+) True G37742
TU50696 lncRNA downstream 147931 12584657 ~ 12585811 (+) True G37761
TU50703 lncRNA downstream 162714 12599440 ~ 12599671 (+) True G37768
TU50705 lncRNA downstream 167072 12603798 ~ 12606662 (+) True G37769
TU50715 lncRNA downstream 225045 12661771 ~ 12661985 (+) True G37778
XM_039798500.1 mRNA upstream 23939 12339555 ~ 12370646 (+) True LOC120557854
XM_039798497.1 mRNA upstream 62811 12311355 ~ 12331774 (+) False LOC120557853
XM_039798725.1 mRNA downstream 51971 12488697 ~ 12496235 (+) True phf13
XM_039797279.1 mRNA downstream 71287 12508013 ~ 12560180 (+) True LOC120557182
XM_039797281.1 mRNA downstream 71287 12508013 ~ 12560180 (+) False LOC120557182
XM_039797276.1 mRNA downstream 71287 12508013 ~ 12560180 (+) False LOC120557182
XM_039797282.1 mRNA downstream 71287 12508013 ~ 12560180 (+) False LOC120557182
TU50647 other upstream 7410 12386171 ~ 12387175 (+) True G37730
XR_005639029.1 other upstream 115961 12274760 ~ 12278624 (+) True LOC120557851
TU50615 other upstream 139611 12253066 ~ 12254974 (+) True G37714
TU50430 other upstream 589191 11780178 ~ 11805394 (+) True G37597
TU50377 other upstream 1000251 11390739 ~ 11394334 (+) False LOC120557336
TU50865 other downstream 279434 12716160 ~ 12719472 (+) False cdab
XR_005638946.1 other downstream 299141 12735867 ~ 12741048 (+) False b3galt6
TU50929 other downstream 388803 12825529 ~ 12857413 (+) False kif21b
XR_005639082.1 other downstream 755052 13191778 ~ 13191911 (+) True LOC120558254
XR_005639080.1 other downstream 756521 13193247 ~ 13193320 (+) True LOC120558251

Expression Profile