RNA id: XM_039798066.1


Basic Information

Item Value
RNA id XM_039798066.1
length 5245
RNA type mRNA
GC content 0.48
exon number 26
gene id smarcc2
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 15631352 ~ 15643555 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCAAAGATGGCGGTGCGGAAGAAAGACGGCGGCCCGAATGTAAAATATTTCGAAGCGTCTGATACCGTTTCTCAGTTTGATAATGTCCGCGTCTGGCTGGGAAAGAATTACAAAAAGTACATCCAGGCCGAGCCCCCCACCAACAAGTCTCTGTCCAGCCTGGTGGTCCAGCTGCTCCAGTTCCAGGAGGAGGTGTTCGGTCGGCATGTCAGCAACCCTCCGCTCACCAAGCTGCCAATGAAGTGTTTTCTGGACTTCAAGTCAGGAGGGGCTCTCTGCCACATCCTGGCTGCTGCCTACAAGTTCAAGAGTGACCAAGGATGGTTTGACTTCCAGAATCCGTCGAGGATGGACCGAAATGTCGAGATGTTCATGACGATTGAGAAGTCCTTAGTGCAGAACAATTGCCTGAGTAGACCAGTCATCTACCTGAGCTCTGACATAGAGCCAAAACTGCTTGGGAAGCTGAAAGACATCATCAAAAGACAtcagGGTTCAGTAACTGAGGACAAGGCCTCCAGCTCCCATGTTGTCGTTCCTATTCCCACCAGCATGGAGGAAGAGGAGTGGGTGCGTCCTGTGATGAAGAGAGATAAGCAAGTGCTGCTCCACTGGGGATATTTTCCTGACGGTTATGATACATGGATCCCAGCCAGTGAGATTGAGGCTGCTGTGGAGGATCCTCCCAGCCCAGAAAAGCCCAGGAAgGTCCATGCCAAGTGGATTTTAGACCTGGACCAGTATAACGAGTGGATGAATGAGGAGGACTATGAAGTGGGCGAGGGCTGCCCTAAGAGGAAGAGGATCTCAGCCAAAACCCTGACAGATGAGGTGACCACACCTGACGAGCGGAGGGACAAGAAGCCTGGCAGCgccaagaagaggaagaggtcgCCGTCGCCCTCCCCTACCCCTCCGCCTCAGGAGAGCAAGAAGAAGAATACCAAAAAAGGGCCAACGACCCCATACACCAAGTCTAAACGGGGCCAAAGGGAGGAGGAACAGGAGGATCTAAGTAAAGACTTGGATGAAGCATCACCTGTTCCAGCATCTGAAGAGGGAAACCCACCTAAGACAAATAGCACCAAGAAGGACTCTGATTCAACTCCAGTCAAGGGAGGAACAGATATGGACGAGCAAGAGGATGAGTCCATGGAAACAGCAGGCAAGgaggaggaggaaggctcACCGAGCGTGAAGGGTGAACCAGTGAAAGGCTCTGACCTTCACGAGGACAATGTGACTGAGCAAACTCATCACATTATTATACCGAGCTACGCTGCCTGGTTTGACTATAacagTGTTCATGCCATTGAGCGCCGAGCCCTGCCAGAGTTTTTCAATGGGAAGAACAAATCCAAAACCCCAGAGATTTACCTGGCGTACAGGAATTTCATGATCGACACCTACCGACTGAACCCTCAGGAGTACCTGACCTCCACTGCCTGCCGCAGGAACCTGGCAGGAGACGTGTGTGCAATCATGAGAGTTCACGCCTTCCTGGAGCAGTGGGGCCTGATCAACTACCAGGTGGACTCCGAGAGCCGACCCACACCCATGGGTCCCCCACCCACCTCTCACTTTCATGTCCTGGCGGACACTCCATCCAGTCTGGTACCCCTGCAGCCCAAGACGTCCCagACCCCTGCTACCCAGCAGATAATGTCCTTCCCAGATAAAGTGAAGGAGAAACCAGCAGATCTGCAAAACTTTGGGCTGCGGACTGACATGTACAGCAAGAAGACTGGCTCTGCAAAGAGCAAGAGTACAGCGAGCTCTATGAGGGAGTGGACAGAACAAGAAACACTACTACTGCTTGAGGGGTTGGAGATGTACAAGGACGACTGGAACAAGGTTTCAGAACATGTGGGCAGCCGTACCCAGGATGAGTGCATCCTGCACTTCCTGAGGCTGCCCATTGAAGACCCTTACTTGGAGGACAACTCCTCGTCCCTAGGACCACTGGCCTACCAGCCGGTACCTTTCAGCCAGGCAGGAAACCCTGTCATGAGCACAGTGGCCTTCCTCGCCTCTGTCGTCGACCCACGCGTGGCCTCAGCTGCAGCCAAGTCTGCTCTGGagGAGTTTTCTCGTATGAAGGAAGAGGTTCCTGCAGCGCTTGTTGAGGCTCATGTGCGGCGGGTGGAGGAGGCAGCGAGGGTCAGTGGCCGACAGGACCCGCTGTATGGCCTGGAGGGTAGTGGCATCGCAGGCACTGGCCtagaggagggagacagacctgatgAAAGCAGTGATGAAAGTAAGAGTGACAGCCAACCCAGTGAAGAGAAGAGGGAGGCCAAGGACAGCAAAGATGGGGCGactgaggaagaggagaagcaggcagagaatgggaagaaggaagaagaaagaggaagagaacaagaaggagagagagaggctgacaAAACAGAGTCAGAGATGGGTGAtggggagaaggagaaggatgGAAAAGAGGGCACAGAGGAAGgacaaagagaagcagagagcgAAGGAGAGAGGAAGGCTAAGGTGGAGCGTGATGTGGGAGAGGGAAACCTGGCCACTGCTGCTGCGTCTGcactcgctgctgctgctgtcaaaGCCAAGCACCTGGCTGCAGTGGAAGAGAGGAAGATCAAATCTCTTGTGGCTCTGCTGGTGGAGACCCAAATGAAGAAGCTGGAGATTAAACTGCGACACTTTGAAGAACTGGAAACCATcatggacagagagagggaggctttggaGTACCAACGTCAGCAGCTGCTGGCTGACCGTCAGTCCTTCCACATGGAGCAGTTGAAATACGCCGAGATGAGAGCCCGCCAGCAGCACTTCCAGCAGATTCAGCACCAGCAGCACAGCCAGGCCGGGGGCCCTCATGCCAACCAGGCTGCTCCAGCACCCCCACCCCAGGGTCCGACCGCAAGTCAGCAAGCTCCCAGCACACCAGCGCTGCAGCCGGCCCCCAGCCCCGCACCTCCAGCCTCTGCCCCGGCCCCTGAGTCCCAACCACCTCAGGGTGCTCACACCTCGCCCCCATGCCCCCCAGGCTCGACCCCCGCTGCCCActccagctccagctccagcaCTACTCCTGTACTCCATGAGCCCACCGCCCCTCTTCCCGGGGAAACACTCCACCCTTCAGCTCCAGTCCCACCTCCACAGTGAGAGAAAACTACATTGCCTGAGAATCCGAATGACTCTGACCACTTTAAACCCTGCCGGTATCATCTGAAATGAAGAAGTCATAAACCGAAGGAAGAGAAACACACTTTACATGTTCAgctctttatttgttttttatttttatttttttcaacaggacaattgatgtgagaaaaaaaaaaattacatctaAATCAAACCAGCTCTACTTTGACTCTCTGTTGAAAAAGAAGTcccttttaaattgaatctgCCTATGaagaaaatgtactttcaaacAGAAGCTGTGCGGTCGATCGGACAGCAACATTTCACTTCCTAATTGTAAGCTTAACAACAGAGATCTGGTGAACTAAGAGGGTCTTAACCAACATGCTGCCACTcaaggagaagaagagaaaagactcatcttgtgttttcagtgttttggaaattgttgcatttattttttctgcAACAGTTTGTCACAGCTTGTGAAGTCCCGTGCTTTACTGTCTCTCCAGAGTTTCCCCCTTGTACTGTAGGTACTAattcaaatatacagtatgtaagaCAAAAATGCACTTTTAACATGTTTCCCAAGGTCTCATTGAAAGACTTGAAGCATCCATGAAATTGAACTTTAGCACTTATATCGTCCTTTTGTTGTCTTAAATACTTTTTCATGCTGAAGTTTTTGGAAACTTGATTGGGAATGTTACTTTTTCctctcaattgttttttttgtattacatgGACAAACGGTCACTCGACAGGGTCTGGCCTCAATGTCTCCAGAGAATTGTCTGTAATGAATGAAAACGAATCGAAAGCCAGTTGGAAATTAAGTTGGTTCGGATGCAGTTTGAGACAATGTACCGTAAACTGGATTTTCTGTTACAAACGCACCTTGTGCTGGCCTGTAATGATACTATTTGAAAGTACTGACAGCATTAGATCATCATCCTGAAAAGACCTCTCTAATAATGTCCTTCCTTTCAATAGCACTTAGAGAAAAACATGTCAGCGATGACCTTCATGTTTTTCAAATCTGGATCAACTCAAAAACATCCAGGTTGTAGTTTTGTGAGGAATGTAGTTTTGTTCAAAAGACTGAAAGTCTGGGAATAATAATTCTAACAGTGACCggataagttttttttttttttttttttcataatttgactttgtgtttattgctaaaccaaaatgtttttataatcatGTTTATCTCGCATTTATTCAATGAGTTTTATTGTGGTTGCTTGGGAAATtaagaggattttttttagcagcttGTTTTTGCTGGTGCATTTCAAGTTACACATGGAAGAAATGTGAatgctgtcaaaaaaaaacaagggcgCTTGCACCTTAAACAGCTGACAATGGAGAATTGTGTCCTTAATATCTGCAACAATATCCTCACTTTTTATCCTAtcaagttttatattttttactgtCCGTTTTTTCATCTTCTTTCTTTGATATGTCAACATTGTAACTGTATATTGTTACCTTTGTAGCCTATATTTACCCTCTCCACTGTTGTGTATGAATCAGGCAGGTCTGTTGGATCCGTCTTGAGATGTGactgtgagcatgtgtgtatgtgaacgCATGCCATTAGGATCTGTAAACCACATTACCGTTCAGTTTTATTTCCAGTGCCATTCGTCGTGTGTCACAAAgtttgaagaataaaaaaaaaaagaaaactggctTCGTTCTGCACACGACACGCCACGTCAGTGTCATGAAATATAATCCAGTCAGAAGGTGAAACTTTACAGTTAATGTCCGTCAAGCCAGTATTGCAGACCTCACCACAGCTGTGAGCATATATGGACTTCTTTTATCTGTGTTATTACTACATTGTGTGGATTTTGTGATATGAAATAAGTGTATGTTCAGTTTCTGTATGTTTTTCACTATGCTGAAGGTAGCAGCAATTGCATTGATTATTATACAGTAGAAATCAAGTTTTCCTCAATAAATCATCACATTTGTGCTGACGGTTACTCTGGCAGTTTGTATTagaaaaaaggtaaaacaaaaGGTTCAGGTTTTGATTACAAAAtgtttgggaaaaaaataaagatgtgaTGAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52129 lncRNA upstream 4512 15626311 ~ 15626840 (+) True G38829
TU52079 lncRNA upstream 87980 15542253 ~ 15543372 (+) True G38788
TU52045 lncRNA upstream 167900 15462301 ~ 15463452 (+) True G38762
TU52021 lncRNA upstream 233845 15396729 ~ 15397507 (+) True G38738
TU51940 lncRNA upstream 380419 15250569 ~ 15250933 (+) True G38670
TU52133 lncRNA downstream 506 15644061 ~ 15644399 (+) True G38832
TU52158 lncRNA downstream 30424 15673979 ~ 15755059 (+) True G38852
TU52172 lncRNA downstream 75441 15718996 ~ 15722184 (+) True G38858
TU52174 lncRNA downstream 84424 15727979 ~ 15729400 (+) True G38860
TU52211 lncRNA downstream 117237 15760792 ~ 15762315 (+) True G38885
XM_039796349.1 mRNA upstream 5307 15606682 ~ 15626045 (+) True LOC120556683
XM_039796730.1 mRNA downstream 13976 15657531 ~ 15661996 (+) True endou
XM_039798516.1 mRNA downstream 33312 15676867 ~ 15709140 (+) True LOC120557865
XM_039798517.1 mRNA downstream 40527 15684082 ~ 15709140 (+) False LOC120557865
XM_039796376.1 mRNA downstream 66661 15710216 ~ 15710890 (+) True LOC120556700
XM_039796501.1 mRNA downstream 69694 15713249 ~ 15715495 (+) True LOC120556777
XR_005638919.1 other upstream 756893 14865059 ~ 14874459 (+) True calcoco1b
TU51738 other upstream 814916 14808352 ~ 14816436 (+) True G38517
TU51384 other upstream 1293592 14335389 ~ 14337760 (+) True LOC120557952
TU51331 other upstream 1397827 14227215 ~ 14233525 (+) False LOC120557956
TU51174 other upstream 2103033 13456929 ~ 13528319 (+) False tfeb
TU52135 other downstream 1956 15645511 ~ 15647851 (+) True G38834
TU52306 other downstream 321859 15965414 ~ 15966107 (+) False ccdc174
TU52330 other downstream 406350 16049905 ~ 16050430 (+) False eefsec
TU52503 other downstream 789683 16433238 ~ 16435229 (+) True G39104
TU52524 other downstream 873981 16517536 ~ 16543580 (+) True G39116

Expression Profile