RNA id: XM_039798069.1


Basic Information

Item Value
RNA id XM_039798069.1
length 3289
RNA type mRNA
GC content 0.47
exon number 13
gene id smarcd1
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 24827806 ~ 24858457 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACTCTGTTCTCGCTCTCGCGGTAACTCCGTCCCTCCACTGGCGGCGACATTCGGAGAGGAGATGGCGGCCAGAGGGGGGTTTCAGTCGGCACCGACgggaggtggtggtggagcAATGGGACCTGGACCACCGGTACCGGGCGCAGGACCAGGCATGGGCCCCGGGACTCCTTCTGGAAGGATGGTACCGTCGTCGGCCGCGCAGAACCACATGTACCGCTCCCCGATGCCCGGGCCCGGGTACCCGAGACCAGGCATGCCTCCATCCAGCCGCATGACTCCACAAGGACCAGCCATGGGCCCCCCAGGATATGGCAACAGCCCAGTGTCGCGCCCTGTGATGCCTGGCGTGATGGATCCGTCTCGCAAGAGGCCCGCCCCCCAACAGATCCAGCAGGTTCAGCAGCAGAACCGCAACCAGCAcacaaagaagaagaagatggctGATAAAATTCTACCTCAGAGGATCAGGGAACTGGTCCCAGAGTCTCAAGCTTACATGGATCTGCTGGCTTTTGAGAGGAAGCTGGATCAGACCATCATGCGCAAGAGGCTGGACATTCAGGAGGCCCTCAAGAGGCCCATTAAGcaAAAGAGAAAGCTTCGGATCTTTATATCAAACACCTTCAACCCCGCAAAGCCAGATGCTGAGGATGGAGAAGGCACAGTTGCATCATGGGAGCTACGTGTTGAGGGACGTCTGCTGGAAGATACGGCTGTGTCAAAGTATGAAGCCACCAAACAGAAGAGGAAGTTCTCCTCTTTCTTCAAGTCTCTGGTGATTGAGTTGGACAAAGACCTGTATGGTCCAGATAATCACCTTGTGGAAtgGCACAGGACTGCCACCACCCAGGAAACTGATGGTTTTCAGGTAAAGAGGCCTGGTGATGTGGGTGTTCGCTGCACCGTCCTGCTCATGCTCGACTACCAGCCCCCTCAGTTCAAGCTGGACCCCCGGCTGGCTCGTATGCTGGGTATCCACACCCAGACTAGACCGGTCATCATTCAGGCCCTGTGGCAGTACGTCAAGACCCACAAACTCCAAGACCCTCACGAGCGGGAGTTCATCAACTGTGACAAATACCTGCAGCAGATCTTTGAAACTCAGCGGATGAAGTTCTCCGAGATCCCACAGCGCTTGCATGCTCTCCTGATGCCCCCTGAACCAATCATCATCAACCATGTGATCAGTGTGGACCCTAATGACCAAAAGAAGACTGCTTGTTATGACATTGACGTGGAGGTGGATGACACGCTAAAGACTCAGATGAACTCTTTCCTGCTCTCCACAGCCAGTCAGCAGGAAATAGCAGGACTGGACAACAAGATCCATGAAACCATTGAGACCATTAACCAGCTGAAGACCCAGAGAGAGTTCATGTTGAGTTTTGCCAGAGATCCTCAGGGCTTTATCAATGACTGGCTGCAGTCCCAGTGCAGAGACCTCAAGACCATGACAGATGTGGTAGGAAACCCAGAAGAAGAGCGAAGAGCAGAGTTTTACTACCAGCCGTGGGCTCAGGAGGCGGTCTGCCGCTACTTCTACTCCAAGGTCCAGCAGAGGCGACAGGAGCTGGAGACGGCGCTCGGCATCAGGAACACCTAAAGAAAAGCATCCACAGGCAGCAAATACGGAGACATGCTGTGCTGTCAGGAGACGACTAATGTTTGAGAGTGTGGCACGTTCAAAATGAATTCCTCCCAGAGTTGTCTGACAAACTTAGAGAGACATAGATACTAGATGGCTTTACTGTTTATATATAGGATgtcccttttttgttttattttaacccTGCAGCTTGACTACTGTTGCAGTTTGGTTGCTACTTTCAAAgtatattttgtttattctCCTCACACCAGAGCTCTCTGAGCACAATGTATTTTTGCTTGCATGTCTAAGCCTTACATGGAAGCATTCCTTTCATTTTGGTACATGTGCCCGTACAAAAGTACAGATTGTACACAAATAAGAAAGCAGAGGGCAGcttttaatgtattttgtcCCTGAATATAAAATATCTAAAATCAGCTGGAATGTGATGAGTAACTTGTAGAAGCTGGATCTTCCTGTCTGGGTTGTATCAGAAGCGGCAGTATTTTTCAAAGCTTCGGCTTGGGTTCGTCGTCTCATCGTGGGCAGGGTGGATGTCGCCGCCTTAAACCCACCAGGAAGTGCCGagggtaactttttttttttttttttttttctcaacaatTGGGATGCAGCTTTCGGGGAGGCAAAAGACATTTAGAAGCTGGTTGCCTCAagaatgtttttctttgttcccCTTTTTGGAAAgtaaatttacattttacactcCCAACCCAGCCCCTGGATCCTTGCCGAGTAAGTTGGATATTAATTGTGATTGTGTTTGTAATCATCAGGCTACTTTGCTGCACATTGGCTGTTCATGTGTCACTTTGTCTTAAGCTCTCATTGGTTTGTTTTGACGGTTTGTGCCTCAATCTGGTGTACGAGAACAGTCTAAAAGCTCAATCATGGCAGAATATACATCTTTTTAAGGATGCCATTAGTAtgaagttttcttttcttttttttttcaatgattcttgtttttaaaatgtgtattaaATCAGTACTTGTCTTGTTAGCTAGTACGGATTATCAAGGAAGTAGCTAGTATGAGTACCTCTAGTCTATATAGTTTTGTAAATActgagcaggaaaaaaaaaactgaagatgGATGTGAAGTAAAATTGTATCTCTTATCCCTTACAGATGTTTTTCTTAACTCTTTGTCTACGCTCAGATAGTTGAACcagtatttatattattaatcagCCCTCGCTGTCAGAGCACAATGATTTGGCTCTCCTCAACATAAAGATGCCAGTCGCATTTGGAGAATCACTGCTGCGCTGGACGAAATGTACACAGCATTCATGTCTGCAAGCTGGGAAAGTTAAATTTTCTGCTTTTTAGTTTAGTGTATTTTTAATTCTGTACAGAGAAGCCATAAACAAGATTTAAAGAGCCGTAGCTTCTTACACTGAAGTCCTGACACCTTGTTGAGTTTAATGGTTGTTTCCCTGTTGAAGGTGGAGATGAGTGTCCTGGCTGAAACTTAAGCGTGTGTGCATTTAATTAACAAATTCCAAGAATACACTAATGTGGGTTTGGGCAGGTACATGATTTGAAACGAGTGGTGGGAACCTCTGGGTCGTAAAACACAATACTGACTATTTGAATCTGCAGACTTTTTCATGGACCAAACCTATTTTTCTGTATGTTATGTTAATAAAGGATATGTAAAATATAA

Function

GO: NA

KEGG:

id description
K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55651 lncRNA upstream 267488 24555525 ~ 24560318 (+) False bloc1s1
TU55650 lncRNA upstream 267488 24557660 ~ 24560318 (+) True bloc1s1
TU55653 lncRNA upstream 285653 24540909 ~ 24542153 (+) True G41375
TU55644 lncRNA upstream 304199 24521599 ~ 24523607 (+) True G41368
XR_005639015.1 lncRNA upstream 373787 24452621 ~ 24454019 (+) True LOC120557758
TU55739 lncRNA downstream 63179 24921636 ~ 24921851 (+) True G41441
TU55833 lncRNA downstream 164001 25022458 ~ 25022749 (+) True G41518
XR_005639034.1 lncRNA downstream 194379 25052836 ~ 25065136 (+) True LOC120557911
TU55863 lncRNA downstream 226957 25085414 ~ 25085842 (+) True G41539
TU55836 lncRNA downstream 240830 25099287 ~ 25104953 (+) False LOC120558031
XM_039798200.1 mRNA upstream 5493 24623492 ~ 24822313 (+) False asic1b
XM_039798201.1 mRNA upstream 5493 24623645 ~ 24822313 (+) False asic1b
XM_039798198.1 mRNA upstream 5493 24624225 ~ 24822313 (+) True asic1b
XM_039798199.1 mRNA upstream 5493 24624225 ~ 24822313 (+) False asic1b
XM_039798196.1 mRNA upstream 5493 24760100 ~ 24822313 (+) False asic1b
XM_039798070.1 mRNA downstream 804 24859261 ~ 24864094 (+) True LOC120557580
XM_039796531.1 mRNA downstream 7717 24866174 ~ 24886029 (+) True cers5
XM_039796532.1 mRNA downstream 8038 24866495 ~ 24886029 (+) False cers5
XM_039796533.1 mRNA downstream 30150 24888607 ~ 24891414 (+) True LOC120556805
XM_039796536.1 mRNA downstream 50627 24909084 ~ 24921376 (+) True rab22a
TU55524 other upstream 1066855 23748910 ~ 23760951 (+) False cbfa2t2
TU55525 other upstream 1066855 23757758 ~ 23760951 (+) False cbfa2t2
XR_005638988.1 other upstream 2836007 21950376 ~ 21991799 (+) False itga7
TU54259 other upstream 4679116 20148104 ~ 20148690 (+) True G40353
XR_005638939.1 other upstream 4904257 19917889 ~ 19923549 (+) False abhd14b
TU56251 other downstream 1410145 26268602 ~ 26273315 (+) True G41825
TU56292 other downstream 1684050 26542507 ~ 26548799 (+) False G41850
TU56293 other downstream 1684050 26542507 ~ 26548799 (+) False G41850
XR_005639013.1 other downstream 1794803 26653260 ~ 26698571 (+) False anks1ab
TU57106 other downstream 4381956 29240413 ~ 29242253 (+) True G42449

Expression Profile