RNA id: XM_039798085.1


Basic Information

Item Value
RNA id XM_039798085.1
length 2234
RNA type mRNA
GC content 0.41
exon number 3
gene id cdkn1a
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 17203651 ~ 17208659 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACCCACCGGAGTTCATCAAAGTTTAGCCCAGGTCCAGTCTGTGAGAATACTTGGAGAACTTATCAAGGAGTAACGTTAGGCTTAGCTACGTAACTATTTGGTCGCTTAAGTTGTATATCATTTATTGGAGAGGGTGGGTTGGAGAACATCAGCCTCTGGCATTTGTTTTTTACACCAGATCTGctgttgtaaaaaaagaaagaaaaaaacaaaaaacaaggagGCAAATAAACAGACCAGATTTATTCAACAGGGTTGAATAAGAAGGATTTAAGTTGGACTAGACTGCCGTCGACTGATAATtgtggaacgatggatACTCGTAAGCGGATCGGGCATCGGATCGGGAAAGGCCCTGCTCGACGAAACCTGTTTGGCCCAGTCGACAGAGAGCAGCTGCAGGTGGAGTACCAGGCTGCCCTGCAGGAAGACCTGGAGGAGGCTTGCCAGCGATGGGGCTTCGACTTCATCACAGACAAGCCTCTGGAGAGCAGCGATTTCCAGTGGCATGCCATCCCAGCCAACAAGGTGCCGCTGATCTACAGATCCTGTATGCTTGTTCCAGGACGTACAGAAGGTCAGAGGACAGCAGAGGCAGCAGTTAAGCCCAAGGGACAAGGAAGGGTGGAGCCACCACAGAGTGACAAGGAGAACATCCCATGTTCGCCAGAGAGATGTGCGCTCAACCTGGAGAAAAcaccagagagaagagagaacacAGGGCTGAAGAGGAAGCAGACAAACATTACAGATTTCTATCAGGCTAAAAGAAGAGTAGTTTGGATGCCACTCAAATCCGGCGAGTGATTTGCGGTGCAGTATCCTGCAAAAGTTGGCAATATCCCAAGAGAACCACACAAACAGTGCTACACTCAGGAAatctacagtctgcacagccaCTCGCCAGGAGGTACTGGACCCAGTGAATTATCTGACAACAGAAGAGACCTCAGCTAtacataattataatatattactGTAAGGTAAATTAGGGTACTGTATTCACTCTAAGGGGGGTTGGTGTTTACCCAGTGGTAAGAAGGGGACATTTGAGCAGAGAAGATTAACGGTAATCTCTCGAATCAGTGGATTTATACTGATTTGGATCATGGGGATGCCAAAGAGTTGAGTGACATTTCCTACTGTACATTCCACAGGTCTGAAAATGCATGTCACCTCTGTACTGTTAGCAGTATGGAGATATGATGATGGACACATTACTGCAGAGACTTGAAACAGATGTCATGTTGGTTATAATCATTGTGACAAGTTGCAGAATAATCTTAAACCCTTTGGTTTCTCTGTTCAGatccactctttttttttttttaagtgaatcaCGAGGGCTAGCAGTTATTTTGTGTGTTGAAATGCTTGAAAGATGTTTGATATCCTGTACATGCAGTTGCTTTGCTTTAGATTTTTAATGTGCCATCATGTCCTCTTTCATTTTTTCCATCGGCTGTAAGTCGATGGATTTATCAAAACAGATCTCCACAAGTGCCCTGTCTGGACTCTGACATTGTAGGTTAGGAGCGTAGCACCATGTCTTAGGAACActtaaaaacatttatattagggtttatatatatatcagatatTGATCTATAGAGTTTAATACAGCATGGTTATGTAGcacaattataaaaataaaaaaaaaaaccaaaaaacattgcagtgttGCACATACATCTGACGGTGTGTCCAAAGCACCCAGGATCAAGTGCCTTTACGGTATTTGTTCCGGTATTTGAAACTTCGTAAAGGATATTCAGAAGAACGTCCTCTCAGAAGCAAATTAATTTACTAAGGTAAAGCTAACATGCTTTATTCTTTTCTATTTGGAATCATAGTGCAATTTTGACTGACAATGTGTTGTGATCTGCCTCAAAACAAACGTTTGTTCTTGATACTTATTTCGGTCCATGTCCGCAAATCTTGTTGCTATGGTTAATCAGAATGGGTGTCAAACAAGGTCAATGTAATGCTAATCCTTACCAACTGACAGCTTAACATGTTCGCCGCTGCAAATACGGAGCTAAGCAAAGAACAGCATTACCCCACACAATGAATGCACTTCTGTTTGTAGATGCTTGTGCACAGGTCCTACATATTGTTTTGTGTTAAAAACTACAAATGAAAATATCTATCTTTATTTATTGTGAGATATTATGCCTTGTGttgatttagtttttgtttaattATGAGAATTACAATAAAATTGTGAAACTTT

Function

GO: NA

KEGG:

id description
K06625 CDKN1A, P21, CIP1; cyclin-dependent kinase inhibitor 1A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52816 lncRNA upstream 44415 17157903 ~ 17159236 (+) True G39358
TU52750 lncRNA upstream 121075 17080666 ~ 17082576 (+) True G39308
TU52745 lncRNA upstream 149700 17049797 ~ 17053951 (+) True G39304
TU52744 lncRNA upstream 149700 17050659 ~ 17053951 (+) False G39304
TU52742 lncRNA upstream 155286 17047935 ~ 17048365 (+) True G39302
TU52918 lncRNA downstream 79780 17288439 ~ 17289516 (+) True G39427
TU52924 lncRNA downstream 89333 17297992 ~ 17298192 (+) True G39433
TU52930 lncRNA downstream 98396 17307055 ~ 17307707 (+) True G39437
TU52926 lncRNA downstream 143047 17351706 ~ 17360942 (+) False G39434
TU52925 lncRNA downstream 146498 17355157 ~ 17357586 (+) True G39434
XM_039798081.1 mRNA upstream 5902 17193151 ~ 17197749 (+) False srsf3b
XM_039798082.1 mRNA upstream 5902 17193152 ~ 17197749 (+) False srsf3b
XM_039798083.1 mRNA upstream 7611 17193151 ~ 17196040 (+) False srsf3b
XM_039798075.1 mRNA upstream 58924 17127395 ~ 17144727 (+) True LOC120557584
XM_039798921.1 mRNA upstream 100874 17097697 ~ 17102777 (+) True LOC120558072
XM_039798113.1 mRNA downstream 1241 17209900 ~ 17216157 (+) True tmcc2
XM_039798112.1 mRNA downstream 1241 17209900 ~ 17216157 (+) False tmcc2
XM_039798114.1 mRNA downstream 1241 17209900 ~ 17216157 (+) False tmcc2
XM_039798115.1 mRNA downstream 3858 17212517 ~ 17216157 (+) False tmcc2
XM_039798122.1 mRNA downstream 20981 17229640 ~ 17234758 (+) True bysl
TU52832 other upstream 5434 17193221 ~ 17198217 (+) True srsf3b
TU52833 other upstream 5434 17193221 ~ 17198217 (+) False srsf3b
TU52834 other upstream 5434 17193221 ~ 17198217 (+) False srsf3b
TU52836 other upstream 5434 17193221 ~ 17198217 (+) False srsf3b
TU52841 other upstream 5434 17193221 ~ 17198217 (+) False srsf3b
TU53107 other downstream 399271 17607930 ~ 17609216 (+) True G39581
XR_005639081.1 other downstream 684634 17893293 ~ 17893420 (+) True LOC120558252
XR_005638976.1 other downstream 696039 17904698 ~ 17926887 (+) False wnk2
TU53438 other downstream 980956 18189615 ~ 18193926 (+) False tusc2b
TU53439 other downstream 980956 18189615 ~ 18193926 (+) False tusc2b

Expression Profile