RNA id: XM_039798109.1


Basic Information

Item Value
RNA id XM_039798109.1
length 3565
RNA type mRNA
GC content 0.49
exon number 8
gene id tmcc1b
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 17663261 ~ 17680433 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCAACTGGTCTGCTACTCAGCTGTTCTGACGTCGAGCACGCTATATGACGTCACCGTGGGAGTGTTCCACCATCGGGAGAAATGAACGGTCATCAACACAATCCTCTCAGCGCCCATCATGTGATTTTTCTAAATGTCCATGGAAACAGCTGACTAAAGTTTGACAGCTATCCCACCAGTTTTCCATTTGTAAGAAGTCCCCAGAGGAAGCACTGCTCGAAATCACTTGGATTAAGCCTTTTTCAATGTTAATAGATCCACAAATCATCCGCTGATGACCACATCTGAAGCCAATCCTGAGTTGTGAGTCAGCAGAGGGGAAGCTGGGCTGATGACAAGCATGACATTGAGCCAAGCCAcagatgtatttccactcaaAAGGCCCAACTGAGCACTCTTCCCATCTGCTTTCCGGCTTTCAACCAGTCGCTCAGAGTGGGGGTGTTGACGGGGCGTAGCTAGTCCCCTGCACCCCCAAGTAGAACCTCACTGTGAAACTGGAGGTCTCTGATGGATCAGGGTAATAGTGAGCAGAGTCCAGAGGAGCCGGACACAGGAGGCCGAACGGAGCCGGAGGTCGGCAGGAGGGCGTCGGAGTCGGAGCATGGCTTGTCCAAAATTACCCACAATGCCCTGGAGAACATGGGAGCGTTGGGAGTGTTGGGCCATGGCCTGAAGCAGTTCTTCCAGCCACAGCGCCGACGCTCCTCTGTTTCCCCACATGACTCCGTCTCTTCCTGCACAGGTGCCCCTCCCTCCGAACCCACTGATGTAGGGTCAGAAGTAGGGGACTCTCCTGCCTCCTTGGCCCTCCCTTTGGATTCTGACAACCCTTCCGCCCCTCCCGCAGCTCTGAGCCGTGTTCTGCAGCAGATCCGAGGTGCTCCACCAATTATGAAGCGAGGCTCCAGCCTGCAGAGCCGCCGCAGCAAGGTGGGGGGCACTGGGGATCCTCCCCAGAAAGGTAGCCCACAGATCCACCGGCGCAGCACCCATGAAGCCCTGCTGCAGGCTGGACGCCCACGCTCCTCCTCGACCACAGATACACCCAGCAGCCCAGCTCTAGTTGACATGCTGCTGACCTCTGGTTACCAATCAACTGAGGAGCCTGACAAGATGGATCATTATGATGGGTCAGGCCCTGCTGTGTCACCCAATGCCCTCCCCTACGGTGCAGATGGGTATGATGTAGTGGACAGTACCCCAGACCCCCAGCGAACTAAGCAGGCCATTGCCCAACTACAACAGAAGATCCTCAAACTCACAGAACAAATCAAAATTGAACAAACTGCACGTGATGACAACGTGGCTGAATACCTGAAACTCGCCAATAATGCAGACAAACAGCAGAGTGCACGCATCAAGCAGGTGTTTGAGAAGAAGAACCAAAAGTCAGCGCAGAGTATCCAGCAGCTGCAGAGGAAGCTGGAGCATTACCACCGGAAACTTCGAGAGGTGGAGCACAACGGCATCCCTCGCCAGCCCAAAGATGTTTTCCGAGACATGCACCAGGGGCTGAAAGATGTCGGAGCCAAGGTGACAGGGGGCCTCTCCAGTTTCTCTCAAGCCACTCATTCTGCAGCTGGAGCTGTGGTGTCAAAGCCGAGAGAAATCGCCTCACTTATCCGCAACAAGTTTGGCAGCGCTGATAACATTGCAGCCCTGAAAGACTCCTTGGATGAAAACCAGGGAGATGAAGGTGTTGGCCCAGGGGGAACGAGGACCCTTGGGACCGGGCAGTTGCAGTCCAGCCCAAAGTATGGCAGTGATGAGGATTGTTCTAGCGCTACGTCTGGCTCTGCAGGAGCCAACAGCACGGCTGGAGCCCCTGGAGGCCCCCCTAGCTCCAAGGGCAATACCCTTGACCATGCCCAGGCCTCAGGCTTTGATGCTATACTCCATGAGATCCAAGACCTCCGGGATAACCAAGGTCGACTGGAGGAGTCCTTTGAAAACTTAAAAGCCCACTATCAGCGGGACTACACGTTGATCATGGAGGCCCTGCAAGAGGAACGATACAGGTGTGAACGTTTAGAAGAACAGCTCAATGACTTGACGGAACTGCACCAGAATGAAATTCTGAACTTAAAACAGGAACTAGCCAGCATGGAGGAGAAGATTGCTTATCAGTCTTATGAAAGAGCGAGGGACATTCAGGAGGCACTGGAGGCATGTCAGACGCGTATCTCCAAGatggagctgcagcagcagcagcagcaggtggtGCAGCTCGAGGGTTTGGAGAATGCCACAGCGCGGACTCTACTTGGAAAACTTATCAATGTGCTCCTAGCTGTTATGGCAGTCCTTTTGGTGTTTGTGTCCACGGTGGCTAACTGCGTCGTCCCCTTAATGAAAACACGCAGCCGCACGTTTTCCACGCTGCTCCTCGTAATCCTCCTTGCCTTTCTCTGGAGGCACTGGGAGGCCATGTCAGAGTATCTGCACCGCTTTCTTCTGCACCCAAGATGACCGGCTTGGAGAGGCTTATTTATATGATGAAGGGACAGAGGCTTTGGGGCTGATGTGTAAAGGGAGGATACTGAACCACACAGGGAGTTGAATCTCAATAGTCCTATCTTTTGTTCCTCTTCAGCAGCTTTTCAAAACACTCAGAAGGGTTGCATCCGAGGTTTGTCACTTTATCACtttctgaaatgtgttttgAGAAGAATAAAACCGAGAATAAGGGAAGAAAAAGGCTAGATGTTTGGTATTTACTTTGCTATCTTTGGTGTAATTGTGAAGCATAGTGTAAGGGTGAATGGGGTACATGTAGatggaggggctaagagaactGCACACTTGATTTCTCTCTTCTGAGTGAATTTGTTTACATGTGGAAAGCATTGCATTGTTTCCCCACAGAAGACATTGTAATGCAGTTTTATTACTTTTGAGCTGATTTAAGTGGTATTGTTTTGAAGTCACTGCTATTTTTATTACAGCTGATTGAtggctttttattttcttttaactatAATGAGCTGACCGTGTTCTGCTGATTTAGTTgtccatattattattattattatcattattattattattatttgtaagtTCTCTCTTCTGGTCTTGCCTGGTTTTACAGTCTGCTCCTTCTTTTCCCTTTACTCAATCTTTTCAAATTTTAGCTTGTGTGACCAACTCTTCCTCTACCTGATCATTACACTCTGAAGAATAGGGTGCTTGCACATCAGCTACATTGCTCTGGAATCAGACTTGTCACTGGATCAAATAGGGGATTCTTGACTTGGTTCTTGTGGATGTGTGAAGTCCATAACACTGGTTCTGCCACAACCAGGATATTACTATCAAGAACTTTAAGTTTGGAGTTGCGACCCTGCCCTCAGGCCAACTGGGTCCTACTATCCTGGTGGCTTTTCCACTGCAGAAGAATAATCTATGAACTGAATTAACATACTTGAAGAGCAGTTAAAGTGCTCAAAGACTCAGTGCTTCCGTACTGTTTCTATTAGTGACAATGAAATAGTTATACTTTTtagttgatttttttattttttaaagacaaataaatttGCTGTTTTAAAAGGTGAAATTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53120 lncRNA upstream 40754 17620723 ~ 17622507 (+) True G39588
TU53106 lncRNA upstream 55747 17606965 ~ 17607514 (+) True G39580
TU53105 lncRNA upstream 56445 17605823 ~ 17606816 (+) True G39579
TU53040 lncRNA upstream 72276 17589710 ~ 17590985 (+) True G39533
TU53025 lncRNA upstream 131337 17531522 ~ 17531924 (+) True G39522
TU53181 lncRNA downstream 4561 17684994 ~ 17686581 (+) True G39626
TU53179 lncRNA downstream 5038 17685471 ~ 17686581 (+) False G39626
TU53180 lncRNA downstream 5038 17685471 ~ 17686581 (+) False G39626
TU53185 lncRNA downstream 9371 17689804 ~ 17690576 (+) True G39630
TU53191 lncRNA downstream 34979 17715412 ~ 17722348 (+) True G39633
XM_039798100.1 mRNA upstream 4636 17654623 ~ 17658625 (+) False LOC120557598
XM_039798099.1 mRNA upstream 4636 17654902 ~ 17658625 (+) True LOC120557598
XM_039798132.1 mRNA upstream 18356 17640646 ~ 17644905 (+) True LOC120557612
XM_039798123.1 mRNA upstream 45313 17610316 ~ 17617948 (+) True LOC120557609
XM_039798158.1 mRNA upstream 58167 17602657 ~ 17605094 (+) True ndufaf3
XM_039798144.1 mRNA downstream 806 17681239 ~ 17684221 (+) False LOC120557621
XM_039798143.1 mRNA downstream 981 17681414 ~ 17684221 (+) True LOC120557621
XM_039796612.1 mRNA downstream 10190 17690623 ~ 17698228 (+) True LOC120556839
XM_039796599.1 mRNA downstream 25782 17706215 ~ 17719329 (+) False LOC120556837
XM_039796602.1 mRNA downstream 25782 17706215 ~ 17719329 (+) False LOC120556837
TU53107 other upstream 54045 17607930 ~ 17609216 (+) True G39581
TU52834 other upstream 465044 17193221 ~ 17198217 (+) False srsf3b
XR_005639081.1 other downstream 212860 17893293 ~ 17893420 (+) True LOC120558252
XR_005638976.1 other downstream 224265 17904698 ~ 17926887 (+) False wnk2
TU53438 other downstream 509182 18189615 ~ 18193926 (+) False tusc2b
TU53439 other downstream 509182 18189615 ~ 18193926 (+) False tusc2b
XR_005639014.1 other downstream 535273 18215706 ~ 18226039 (+) False LOC120557740

Expression Profile