RNA id: XM_039798112.1


Basic Information

Item Value
RNA id XM_039798112.1
length 3036
RNA type mRNA
GC content 0.49
exon number 5
gene id tmcc2
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 17209900 ~ 17216157 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACAGCTAGCATTTGCATTTAGACTAAAAGAGAGAGACGGCGAGAGGTAAGAGAGCCAGAGGGAGGCGGAGGGAGCTtatgacacagagagagagagagagagagagagagagagagagagagagagagagaccagatCAGAGcattagagagagagggaggtagtGGGAGGCTGCAGTTATCGATGGCATTAACAATGGAGCGTTAGGATCCAGTGAGGTGTTGTAGTCAGCCATACAGCGGCTGGGGGTTAAGATATTTTGAGGAGGGGGGCTCCTCCTCGGTGAGcacagggggaggaggaggaggaggtgggaggaGGATGGGCCTCGAACACAGACTTGCAATGGCACTGCAAAAATTGGATTAAAGCAGTATGCTGGACAAGAGCGAAGTGACAACTCTAGGCCTACCCTCCACCACCAGCCATGGAGGCTCTGACAGTAACATCAGTGCGGACGGagcggcggcagcagcagcagcagcatcggGGGTCATGGCCTGCGGGGGTGCAGAGGGTTTTGGGGTCGTCGAGCCACAGCGGACACGTGCTGCCTTGGAGCATCTGCAGCAGAAGATCCTGAAGGTCACCGAGCAGATTCGTGTGGAGCAGGAGGCCCGAGACGACAACGTTGCAGAGTACCTGAAGTTGGCCCACAACGCAGACAAACAGCAGGCATCCAGGATCAAGCAGGTGTTTGAGAAGAAGAACCAGAAGTCAGCACAGACCATTGCACATTTGCACAAGAAACTAGAGCACTATCACAAGAAGCTTAAGGAGATAGAACAGAATGGACCGGCCCGGCAGCCCAAAGATGTCCTGCGGGACATGCAGCAGGGATTAAAGGATGTTGGGGCCAATGTTCGTGCTGGGATAAGTGGTTTTGGAGGTGGAGTAGTTGAAGGGGTCAAAGGTGGAGTATCTGCCTTCACTCACACAGCCGTGGTCTCCAAGCCGAGAGAGTTTGCCAGTCTTATCAGGAACAAGTTTGGCAGCGCCGATAACATTGCTCACCTAAAGGACTCACTCGAGGACGGAGTCGGGGGCCACTCTGAGGACACCCCGACACCTCGTGCACTGAGTGGAAGTGCCACTCTGGTCTCCAGCCCAAAATACGGCAGCGACGACGAGTGCTCCAGCGCCACGTCGGGCTCCGGAGTGGGCAGTAATTCTGGTGGggcagggggaggaggaggaggaggactgtTAGGACCAACCATGGGGAGCCCCAGACTGGACGggcaccaccaccatcaccatcacATGCACAGCTCTTGGGACTCTCTACTTGAGGGCCTGCAGGAGATCAAAGCCAGCCAGGCGCACATGGAGGATGCCATCGAGGACATGAAGGGCCAGCTGCAGAGTGACTACTCCTACATGACTCAGTGCCTGCAAGAAGAAAGATACAGGTATGAGCGACTTGAAGAACAGCTGAATGACTTAACAGAGCTGCACCAGAATGAGATGACTAACCTTAAACAGGAGCTCGCCAGCATGGAGGAAAAAGTCGCCTACCAGTCCTACGAGAGAGCACGAGACATTCAGGAGGCGGTGGAGTCGTGCCTGACCCGCATCACCAAGCTggagctgcagcagcaacagcagcaggtgGTCCAGTTGGAGGGAGTGGAGAACGCCAATGCTCGAGCTCTGCTGGGCAAACTCATCAACATCATCCTGGCGCTCATGGCCGTGCTGCTGGTCTTTGTCTCCACCATGGCCAACTTCATCACCCCGCTGATGAAGACCCGTGCCCGGGTGGCCGCCACCGTCCTGCTGACCTTGCTGCTGTTCGTCCTGTGGAAGCAGTGGGACTTTGTGGAGCCGTGGCTGCTGCCCAGCTGAGCtccctgacagagagagagagagagagagagagagagagacactccAGTGGGGGCCAGAGCAGAGAATCACAAACTCAGTCACCACCACTGAAGGATTCAGAGGCTGGAATAAAATCAGGGCCACTTTGAGCGTGAAGGTGGAGCATCTGAGGACAAAACATGGCACTTTTAAGACGAGGGAGTGTGACCAGATCTGGCCTGCAGAGTGTTGGGGGGTGTTTACAGTGAAAAAGAACAGAAAGTCTCTGCCTGCCAAGCGAGAAAAGACATCATCTCATCAAATCTGTTGGTGTTGATGACCAATCATCGATTGCATTGCTGTCACCAAAAACTGAGTTTCTTCCAAGAAATCTTTGGATCGTCTTTTTTCTAATGATTTATGATACATGAACTACAAAGACTAGAGAAACGTAATAATGACTTTAAAATGCTGATCATGTTCGCCGTAACCTTCATGTTGAAGCTATAGTATATTTGAGAGGAAAAAGGTTTTTTTCATGAATGTTATGTGCTCATgcatgtgtttatatgtgcactAAGATGCATCTAGTTGGCATGAGTTAACATTTCATTAATGACCAAATGAATCTTCTATAACTGCCGTTTTGTTGTCAGAAATACCGTGTAGATATGTTGCATCTCAACTCAGTGTCACTCCTGGTTTGTTTCACATCCTGTTCTGGTGGGGCTTTTAGAcgcatttctctctttttgtctttttcttgaAGTCAaatcaactgttttttttttacgctgaTATCTGCCACAAATTCACCTTAATATTTCAACTATGTAAAATCTGTTCTGTTCTTAAATGCTATTTCATAACCACTATTATAGGACTGCTACTAATCCACAGTGTCAAATTAACTGGCATGTCAAATTGTATTAAAGTTTATATCCAGTTTGCAAAAAATAGTTATTGCTGTTTTAATAAACAATGTAAGAAATACATGATTTCATATATTAGGCTGACCTTGACTATATCCTTATCATCCTTTTGCAGAGACAGAACTTTTTGACTGAAATGTTCTTAGAAATCTTCCATCACGTACGATATAGATATAATGGTACCACCTTCTAATTAAGCATCTTTTGTAACTAAGGGTTCTATtaatagtttataaaatattttctaAAGCTATATAAATCCGTTTTGAGGCTTTAATAAAAGTTTGTGAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52816 lncRNA upstream 50664 17157903 ~ 17159236 (+) True G39358
TU52750 lncRNA upstream 127324 17080666 ~ 17082576 (+) True G39308
TU52745 lncRNA upstream 155949 17049797 ~ 17053951 (+) True G39304
TU52744 lncRNA upstream 155949 17050659 ~ 17053951 (+) False G39304
TU52742 lncRNA upstream 161535 17047935 ~ 17048365 (+) True G39302
TU52918 lncRNA downstream 72282 17288439 ~ 17289516 (+) True G39427
TU52924 lncRNA downstream 81835 17297992 ~ 17298192 (+) True G39433
TU52930 lncRNA downstream 90898 17307055 ~ 17307707 (+) True G39437
TU52926 lncRNA downstream 135549 17351706 ~ 17360942 (+) False G39434
TU52925 lncRNA downstream 139000 17355157 ~ 17357586 (+) True G39434
XM_039798085.1 mRNA upstream 1241 17203651 ~ 17208659 (+) True cdkn1a
XM_039798084.1 mRNA upstream 1241 17206149 ~ 17208659 (+) False cdkn1a
XM_039798081.1 mRNA upstream 12151 17193151 ~ 17197749 (+) False srsf3b
XM_039798122.1 mRNA downstream 13483 17229640 ~ 17234758 (+) True bysl
XM_039798139.1 mRNA downstream 19063 17235220 ~ 17239904 (+) True ccnd3
XM_039798096.1 mRNA downstream 42034 17258191 ~ 17284292 (+) True dstyk
XM_039798166.1 mRNA downstream 155326 17371483 ~ 17377553 (+) True LOC120557637
XM_039798152.1 mRNA downstream 162022 17378179 ~ 17385774 (+) False nbl1
TU52833 other upstream 11683 17193221 ~ 17198217 (+) False srsf3b
TU53107 other downstream 391773 17607930 ~ 17609216 (+) True G39581
XR_005639081.1 other downstream 677136 17893293 ~ 17893420 (+) True LOC120558252
XR_005638976.1 other downstream 688541 17904698 ~ 17926887 (+) False wnk2
TU53438 other downstream 973458 18189615 ~ 18193926 (+) False tusc2b
TU53439 other downstream 973458 18189615 ~ 18193926 (+) False tusc2b

Expression Profile