RNA id: XM_039798117.1


Basic Information

Item Value
RNA id XM_039798117.1
length 1859
RNA type mRNA
GC content 0.51
exon number 5
gene id LOC120557606
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 17426082 ~ 17436565 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTAGGAGAGAAGTTATGTTCCATAAGAAGTAGGCTACTGTAACGTCACATTAATGGAAATAACTGCAAAGCGCAAACATTGCAGTAGGCTACGCATGACGCAGGTGTTTGCTGAAGAAAAGTTTGGATGACGTGCAGTAGCAAAACTCTGCGGAAGTGGCAAAATAACACAGACTGGACCATCTGTGACAGTGATCTGTGCGATGGAAACTGGTGAAGGAACCCCATAGAAGGGAGAGTCGGTGTTGGCTATTTCACCTGCCTGCGCTGTTTCTGATCaaattcatatatttttttccagtgCTGTTTAGAAAGGATGACTGTTTTTTTACTTCGCTGTGTTCTTCTCTGCGCGATGTTGCAGCGGAGCAACATGCAGATTGCTGTACCTGCCACAGTGTTAAACTGCTGTGAAGGGCATATTCTCCTTCTGCTGGACTCTTCAGGAAGTATAGCAAACTACGAGTTCTTACGCCTGTTGCACTTCGTCACCGAGCTGCTTCGCCCCTTCTCATTGGGCCGTGGGCACGTAAGAGTCGGGCTGCTGCAGGTGGGCACAAATCCTAACCTGGAGTTCGGCCTGGACGTCCACAGCAATCAGGAAGGTCTGCAGAAAGCTCTGCGGAGTGTCAGCCAGCTACAGGGAGACACCAACACCGAGGCAGCGCTCAGGGTGGCGCAGCAGCTTCTGACAGAGACAGATGAGAACGTGCCAAAGATTCTGCTGTGGCTGACGGATGGTGTGCAGCCTGGAGACGTGGACGAACCGATGTCGGAGCTGAAGGCGCAGGGAGTTTCTGTTCTAGCTGTGTCTACAGTACATGGCAACTACCAGGTGTTACAACGTGCAGTGACACCTCCACTGGAGTCTCACCTCTACTCTGTGGACATAGATAACATCGACATCATCACAGAGGACCTGAGGGAGGCCATTatcaAAATTATTcgtgcagaacggctgcgtgtGGTTCACGTGACTTCCCACAGTGCTGTGCTGCAATGGCGTCCTGTTCTGAGTGCTGACAACGGTTACTATGAGCTCTCGTACAAATCTAGGTGGAAAACGGACACTGAAACTAGACGCATTCTCCCAGGCGACTCCAGCTGGGTAGAGCTGACCAAACTCCAGCCTGAAACCACCTACACAGCTGCCCTCCGCCCAGAGTCCAACCAGGGGCTGTTTAACACACTCTCTGTTGACTTCACTACACTTCCTGATATTTTAAGCCCGACAGTCGTCTCTGTGTCAGACTCTGGGCCTCGTCAGATCCGTGTGAGCTGGGGTCCCCTGCAGCCGGCTCGAGTCCAGAGATATACTGTTGAGTATGGAGCTATTCCAAGCGGACACGTCCACACCGTTACATTACGAAACCAACAGAACTCTACCTTGCTGAACGGCTTGGAGCCGGGCACTCTGTACCTGGTCACAGTCAGTGCTCTGCATGTGAATGGAAAAGAAAGAGCCATGTCTGTAAGGGCATGCACTCAAGAGGCTCTGGCCGACCTTCGGTTGACCACAGTGGAGCGTCAGGAGGTGCAAGTAACATGGAAGGCCCATCAGGAAGGTTTGAAAGGCTTCTGGCTGAGCTGGGAGGGAGAATTCTCTAAAAGCTCCTCCTCGAAGCCCTCCGCGTACCTGCCTCCTACCTCTCATTCAACGCGTCTCACGCGCCTTGCACCGAGCAGTCGAGTGTGTGTGTCCCCAGTCTATGGCTGGGGCCGAGGAGACGGGTTATGCTGCACTGCAGAGAGGCACACACGTTGGCTCAGCTGAATATTATTAActgctttttttcttaattCCTGCAATTATGCTCATGCATAGCAGGTTTGGTTCATTAAAGGGAATTGTAATTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52927 lncRNA upstream 30260 17355157 ~ 17395822 (+) False G39434
TU52941 lncRNA upstream 48522 17371536 ~ 17377560 (+) False LOC120557637
TU52926 lncRNA upstream 65140 17351706 ~ 17360942 (+) False G39434
TU52925 lncRNA upstream 68496 17355157 ~ 17357586 (+) True G39434
TU52930 lncRNA upstream 118375 17307055 ~ 17307707 (+) True G39437
TU52985 lncRNA downstream 25299 17461864 ~ 17462250 (+) True G39486
TU52983 lncRNA downstream 26973 17463538 ~ 17464778 (+) True G39484
TU52988 lncRNA downstream 29522 17466087 ~ 17466596 (+) True G39489
TU53012 lncRNA downstream 63498 17500063 ~ 17501224 (+) True G39509
TU53019 lncRNA downstream 74305 17510870 ~ 17512831 (+) True G39516
XM_039798159.1 mRNA upstream 28558 17390537 ~ 17397524 (+) True LOC120557631
XM_039798152.1 mRNA upstream 40308 17378179 ~ 17385774 (+) False nbl1
XM_039798153.1 mRNA upstream 40308 17379992 ~ 17385774 (+) True nbl1
XM_039798166.1 mRNA upstream 48529 17371483 ~ 17377553 (+) True LOC120557637
XM_039798096.1 mRNA upstream 141790 17258191 ~ 17284292 (+) True dstyk
XM_039798140.1 mRNA downstream 6086 17442651 ~ 17445993 (+) True LOC120557619
XM_039798135.1 mRNA downstream 13163 17449728 ~ 17452057 (+) True fndc10
XM_039798155.1 mRNA downstream 16257 17452822 ~ 17457991 (+) True ssu72
XM_039798165.1 mRNA downstream 22359 17458924 ~ 17462722 (+) False LOC120557636
XM_039798164.1 mRNA downstream 22412 17458977 ~ 17462722 (+) True LOC120557636
TU52833 other upstream 227865 17193221 ~ 17198217 (+) False srsf3b
TU53107 other downstream 171365 17607930 ~ 17609216 (+) True G39581
XR_005639081.1 other downstream 456728 17893293 ~ 17893420 (+) True LOC120558252
XR_005638976.1 other downstream 468133 17904698 ~ 17926887 (+) False wnk2
TU53438 other downstream 753050 18189615 ~ 18193926 (+) False tusc2b
TU53439 other downstream 753050 18189615 ~ 18193926 (+) False tusc2b

Expression Profile