RNA id: XM_039798123.1


Basic Information

Item Value
RNA id XM_039798123.1
length 3004
RNA type mRNA
GC content 0.44
exon number 12
gene id LOC120557609
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 17610316 ~ 17617948 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAAACACGCCGGGGCACTCGGGTGGAAAATACTTCTGATATTTTGCGGTGCGCAGACTCTGGGCGGGCCGCGGTCTGCAAATTTGCGTTTCCTAGGATGGTGAAAATagatatacgtatatatatcgATGGGGTGGTGGTGAAAGCGGGTgaaagccatggatgtattaggtgAAAGCATGACCCCACCCTAatctgtttctgattggctagtacttaTTACCTTCCTTGTTTGGATTGTAGTGAGATTGGTAAGGGTCATAATGGTAGAATACCgggttagccaatcagaggcagagtaaggTAGAGTAGGGCGGGAtatgccttcgccatcctaggaaacgCAAATTCGCTTCCGGTCTACGCCGGGTGTAAATGAAAGCGCTTTTTGTGTCATGTACTGTGTTGCTATCTTCCAGCCGCTGCATCTCcaactttaactttaattaCTGTTTGACTGCGGAGTTGAACAAGTCAGAGAAATGTCTTCAGCACAGACATTTTCAGACCCAAACCAACACAAGCGTGTATCCGTTAAGTCCAACCCTGGATTCCTGGAACGGTTAGGGGAAACTGCAGGAGGAACAGTTGTTGGTGTCGGACTGTTTTTCCTCTCAATCTATGTTCTTTTTACCAATGAAGGACGGGCTCTGCGAACAGCATCTTCCCTGGATGAGGGTCTTTCTCAGGTTGTGTCGTTGGGGCCGTTCTCCAGCCTCGACCTGCAGAACAACTACCGTTTAGTTCATCTGTCTGCACGGCTGCGCACCTCACAGccCCTCCATGACCCAAATTACAGAGTGGTGGTGCAGGCAGTGAAGCTGAAGAGGCAGGTGGAAATGTATCAGTGGGTGGAGTACCGGGAGAGCAAGGACTACCAAGAGGACGGTGAGACCAAAACTGAGACAACTTACACCTACAACACCGAGTGGAAATCAGAGCTGGTCAACAGTCGTCATTTTGACTTGGAAATGGGACACCAGAACCCAAGTGCCATGGCGGTTGAGAGTGTGACAGTCGTGGCTCCTGAAGTCGGAGTTGGACCTTTCAGTCTGTCTAAAGGCCTGGTGGAGCAGATAAATAATTTCCAGACGCTGCGTCTCAGGGATTTTTCATTCGACCCTTTTCTCAGCATCGATGACGATTATTTCTATCACACTCAAAACCCACGCAGGCCGGAGgTTGGGGATGTGCGCGTGAGATTCTCCTTCGCTGGACTGAGCGGGGAGACGTCTCCCCTCGGCCCGGCTCAAACTGTCAGTATTGTGGCCATGCAGAGAGGGGAGCAGCTGATGCCTTTTAAAACCAAGTCAGGAGACACTCTGGAGATCCTGTACCTGGAGGAGCTCTCTGCAGAGGAGGTTTTTGCGAAAGAACTCCAGTACAACAGTATGAAGACATGGGCACTCAGGGCTGCTGGCTGGGCCCTCATGTGCCTTAGTATTCAGCTGACCATGCGCATCATCTACACACTGGTGGATTGGGTTCCTATTCTCAGGGAGCTCGTGTCCGTGGGGCTGAAGATCTTCGCCCTGTGTGTCTCCTGCTCTCTGTCCCTTCTCACCATCGGAGCAGGTTGGCTTTTTTACCGACCATTAGTGGCTGCTGCTCTGGGAGCTCTAGCTCTGCTTCCGGTGTTTCTCGCCCGCTCAGGACTTCCGGCCAAGAAGAACGAATGACAAATAAACTGATGATTGTCACAACAATTGCTGATGCCCAGCTGTAGCTATTCATCAGAGGAACGAGACTGTATTGTGCAGCTGTTTTTCTCCCACAGCAGGGTTACAAGCCACATAAGACTTGCGTTATTCGGGTAAAACAGACATTTTATGGTGATAAGGGGGGATGCAAGGGGCTTGAACATAATCTTTTTTAGTTACAGTGGGCATCATTTTATCACCCTGGAGATATGTTTATGATTAAAAAGAAATCCCACGTCAACCACTGCTGGTGTCGTTGCTTTCAGACCGCAAATGTTATCAGATGTGGCCTTTCAAAAGTCTATCCACCCATGAAAACCCTCACTCCATCATCTTGATATTCTGTTGCTTGCAATGAGCAACATAAGATTACTGTAGTTTCATTTTGACTATAAATGTAATTCGTCAAAGAGTTGTTCCTCCCTCCACAAAACTTACTTatttgccagtttattaggtacacctagctaAAGCAGTCTAATACAACTGCCCTAcctataatgttcagtttttgttcaTTGTTTTAGTGAGTTGTTGATTTAACTTTATGGTCATTTTAGATGGCTGTCATTTGAGGTGCTGTTGAATTGCACTGAGAGGTACTTATAAGGTCTGCACTCATTGATGTACATTGGGTGGAAATAATatttgtttaacccttgtgctgacttcgggtcaaattgacccgtttcaAATTTtggttttatatcagaaaatatgggacgtagaaataagcgctgaaaatgtgtagaagaacatttttttaatttaaacgttggaaaaactgtgaaaacattgacaagaaaagtgtttttttttcaaggttgaagggaagacaacacaagggttaaacaaacGTTTTACCCTTCATGGGTGAGGATTTATTGCAGGGGCGtttattagactgcattagttttagctaggtgtGCCTAATATAAACTGCTGAGTGTGTTCCTAATGTAAAACACAAGTCATTTTGATATATCATATTTTCTCATTATCTGCAACACTTGAGAAAACGTGTTGCATTTTCAAAATTTAACATTGCTCATATCATCAGGGATTTCTTCATGAAATACAAACTGAGTGACTTGAAGTGATGTGTAAACATTTTTCATtaatattctttttcttttggaaaATTATGAATGTCATTGCTTTGTTTAGACTAAAAGACCAATCTTTGTAAAATACCAAAGAACAGAATCTGCATTTTTATGGTATtgtttgtatgcatgtatgttaAATAAAGCACTTCAAGATGGCCTGGAAATCCAGGCACCGGCAAGTTGAGCCTGAATGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53106 lncRNA upstream 2802 17606965 ~ 17607514 (+) True G39580
TU53105 lncRNA upstream 3500 17605823 ~ 17606816 (+) True G39579
TU53040 lncRNA upstream 19331 17589710 ~ 17590985 (+) True G39533
TU53025 lncRNA upstream 78392 17531522 ~ 17531924 (+) True G39522
TU53019 lncRNA upstream 97485 17510870 ~ 17512831 (+) True G39516
TU53120 lncRNA downstream 2775 17620723 ~ 17622507 (+) True G39588
TU53181 lncRNA downstream 67046 17684994 ~ 17686581 (+) True G39626
TU53179 lncRNA downstream 67523 17685471 ~ 17686581 (+) False G39626
TU53180 lncRNA downstream 67523 17685471 ~ 17686581 (+) False G39626
TU53185 lncRNA downstream 71856 17689804 ~ 17690576 (+) True G39630
XM_039798158.1 mRNA upstream 5222 17602657 ~ 17605094 (+) True ndufaf3
XM_039798086.1 mRNA upstream 31400 17557920 ~ 17578916 (+) True si:ch1073-335m2.2
XM_039798087.1 mRNA upstream 31400 17557920 ~ 17578916 (+) False si:ch1073-335m2.2
XM_039798088.1 mRNA upstream 31400 17561346 ~ 17578916 (+) False si:ch1073-335m2.2
XM_039798131.1 mRNA upstream 54952 17549523 ~ 17555364 (+) False fblim1
XM_039798132.1 mRNA downstream 22698 17640646 ~ 17644905 (+) True LOC120557612
XM_039798100.1 mRNA downstream 36675 17654623 ~ 17658625 (+) False LOC120557598
XM_039798099.1 mRNA downstream 36954 17654902 ~ 17658625 (+) True LOC120557598
XM_039798107.1 mRNA downstream 45313 17663261 ~ 17680433 (+) False tmcc1b
XM_039798109.1 mRNA downstream 45313 17663261 ~ 17680433 (+) False tmcc1b
TU53107 other upstream 1100 17607930 ~ 17609216 (+) True G39581
TU52833 other upstream 412099 17193221 ~ 17198217 (+) False srsf3b
XR_005639081.1 other downstream 275345 17893293 ~ 17893420 (+) True LOC120558252
XR_005638976.1 other downstream 286750 17904698 ~ 17926887 (+) False wnk2
TU53438 other downstream 571667 18189615 ~ 18193926 (+) False tusc2b
TU53439 other downstream 571667 18189615 ~ 18193926 (+) False tusc2b
XR_005639014.1 other downstream 597758 18215706 ~ 18226039 (+) False LOC120557740

Expression Profile