RNA id: XM_039798131.1


Basic Information

Item Value
RNA id XM_039798131.1
length 1618
RNA type mRNA
GC content 0.48
exon number 8
gene id fblim1
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 17549523 ~ 17555364 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gaaggaggaggggtCGACGAACGAGAGAGTCGGGAGGGAGGTACAGAAGGAAAAGGAGTGGCCTTCTGCTGATAGTCGCCCTCTCTACCGGAGTAAAGTCTTCTCTCAGTGGCAGCTTACAGGAGGGAAAACAAACCAGAAGTTTTGAGATACAGAGCagggaaggagaaaaaaagaaaagacagagctGTCCTCAAACCGAATTTTCTCCCAGGCTGTACGTGGGTTTTATACAGTCATGGCATCAGCAGCTCCACCAAAAAGGATGGTGTCTTCTGTCTTCATCACTCTTGCGTCTCCTCACCAAGCCACTGTGACACAGCAGCAGCCTGTCCTCCAAGCTCACAGTGCTCCGGCCAGAGACAAGCAGCACACTGCTGTACGAGTCAGCCCAAGTGACAACATCCCCGCCTTCAGACATAAGAAAGAGGACCACTCACAGTCTGAGTCCTATGGCAGTGTAGACAGCAAAGACTGGACTCGTACGGCCCGAACTTCAGACCCTCAGAGCCCAAAACCTGCCCAACCTGGACCCAGCAGAGGAACACTGCAAGAAGATTACATAGAGTTcttgcctcctcctcctcctcctcctgctgccgCACTGCCTTCAGCTGTGGGAACATCGCTCTCTGAAGAATCAGCACTtccaccacctcctccagcCCAGTCGCCTCTCTTCCACCCTATGACCCCCGGCCGGCAGCCAGTTTACAACAGACAGGTGGAAACAAGCACACCATCTAGTGGGTTAAAACAGGATGAACAGTCCCATGGGATCCATAAAAATGGCCAAGACACAAGCAGGGAGAGTAAAGAGGTGTGTGGCTTCTGTCGGAAACCCGTGGCTCTTTCTGAACCTGCCATAGAGGCCTTAAACAGGACATACCATGATGGTTGCTTCCAGTGTAGATCTTGTCACATTCCCCTGGCTGGTAAACAGTACTACAACAAGGCAGGAATCCCACTCTGCGAAGACTGCTACCAGGCCAGTCTGGAACTTTGCTGGGCATGTGGGGAGGTTATCACAGATCATGTTATCCGTGCACTGGAGCGAGCGTACCACCTTTCTTGTTTCAACTGTGAAACATGTAAACAGCAAATTGGAGAGCAAGCTTTTGCTCAGGGAGAAGTTGGAGAAGTGTATTGCCTCCAGGACTATTACAGGAAGTATGCTCCAAAGTGTAATGCCTGCAACCAGCTAATCATTCCAAAAGAAGATGGTACTGACAGCTATAATGTTAAATGCTTGGGACGCTCCTACCATGAGAACTGCTACAGGTGTGAGGTCTGTGTCATCCAGCTCTCTCCTGAACCAAATGAGCGTGGCTGCTATCCTTTGGAAGGGAAGATGCTTTGCAAATCTTGCCATCTGAACCTGGTTTCAGGCCAGCACTAACACTGGCCTTACAGCCCGGGATAAactgcaacattttttttttcttttttacaatacATCATGCTTTCTGAagattctctttttcttcttttatactTGATAATTTTGCACTCGAACTACAAAATGCACCAAATATATTTATGCAATAGCCTTTATAAAAACATACTGCAAGCATTATTTGATCTTTTGTAAACCTCAATCAGTATACTGTTTCTCACA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53025 lncRNA upstream 17599 17531522 ~ 17531924 (+) True G39522
TU53019 lncRNA upstream 36692 17510870 ~ 17512831 (+) True G39516
TU53012 lncRNA upstream 48299 17500063 ~ 17501224 (+) True G39509
TU52988 lncRNA upstream 82927 17466087 ~ 17466596 (+) True G39489
TU52983 lncRNA upstream 84745 17463538 ~ 17464778 (+) True G39484
TU53040 lncRNA downstream 34346 17589710 ~ 17590985 (+) True G39533
TU53105 lncRNA downstream 50459 17605823 ~ 17606816 (+) True G39579
TU53106 lncRNA downstream 51601 17606965 ~ 17607514 (+) True G39580
TU53120 lncRNA downstream 65359 17620723 ~ 17622507 (+) True G39588
TU53181 lncRNA downstream 129630 17684994 ~ 17686581 (+) True G39626
XM_039798134.1 mRNA upstream 3972 17542208 ~ 17545551 (+) True LOC120557614
XM_039798137.1 mRNA upstream 7385 17533065 ~ 17542138 (+) True slc25a34
XM_039798136.1 mRNA upstream 7385 17534080 ~ 17542138 (+) False slc25a34
XM_039798138.1 mRNA upstream 7385 17536106 ~ 17542138 (+) False slc25a34
XM_039798104.1 mRNA upstream 18072 17525015 ~ 17531451 (+) False fbxo42
XM_039798086.1 mRNA downstream 2556 17557920 ~ 17578916 (+) True si:ch1073-335m2.2
XM_039798087.1 mRNA downstream 2556 17557920 ~ 17578916 (+) False si:ch1073-335m2.2
XM_039798088.1 mRNA downstream 5982 17561346 ~ 17578916 (+) False si:ch1073-335m2.2
XM_039798158.1 mRNA downstream 47293 17602657 ~ 17605094 (+) True ndufaf3
XM_039798123.1 mRNA downstream 54952 17610316 ~ 17617948 (+) True LOC120557609
TU52833 other upstream 351306 17193221 ~ 17198217 (+) False srsf3b
TU53107 other downstream 52566 17607930 ~ 17609216 (+) True G39581
XR_005639081.1 other downstream 337929 17893293 ~ 17893420 (+) True LOC120558252
XR_005638976.1 other downstream 349334 17904698 ~ 17926887 (+) False wnk2
TU53438 other downstream 634251 18189615 ~ 18193926 (+) False tusc2b
TU53439 other downstream 634251 18189615 ~ 18193926 (+) False tusc2b

Expression Profile