RNA id: XM_039798132.1


Basic Information

Item Value
RNA id XM_039798132.1
length 1489
RNA type mRNA
GC content 0.50
exon number 6
gene id LOC120557612
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 17640646 ~ 17644905 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTGAAAGCCGGAAACAGCGAGCATGTGTCCTCTGGAGTTGTTGTGTGTATCTCCAAGCTAATGTGAACTGCTTAGCTAGCTATACTTCACAATGAACAGCTATAGGAGAATATCCTGTAGTGACTGGAAATCCGGTTTGAACGTCGTCTTATCTCGGGTCAAACCGTGGACCAACTGCTGCCGGTGTCCGGAGGCAGCGCCGCCCCTCAGCCGGAGCCAGGCCACTGCCGCTGAACAGGCTCCAGGCTCCGACACGGGGGAGAAGCCCCGGCTGAGGGCGGTCGACCTGGCGCGGCAGGTCCAGCAGGAGTGGAGGAAGCCACGGGCGGCAGAGCCTCCGCTATCCGGCCAGCAGAAGAGGGTGATGGAGCTGAAACGGTTCAGTCTTCAGCTACAACATGTTCATCCTAACGTGCTGGCCAAACACCTGCACAGAGCCGTGCTGTACCAGGACAAAGATGTAGTTGTCATCAACAAACCTTATGGCGTTCCTGTCAGAGATGACTGTGGGGCGACATCGATCTCCTCTGTACTTCATGTTCTCTCCAAAATGATGGATGGAATGAAGATCAAGTCTGATTCTCAGCTGCTCCCCTGTCTGAGGCTGGAGAAGGAAATAACAGGAGCCCTCCTGCTGGCCAGGAGTGAAGAAGTAGTCAAGCACATACTCAGCCTTCACAGAAATAACCAAGTGCAGAGAAAGTACTGGGTCATCACAGTTGGTGTACCTGTTCCATCCGAAGGAGTGATTGACATCCCCATCATAGAGAGAGAGGTCACAGGCTCTCGGCCACACTACAAGATGGCTCTAAGTCCTCTTTTCAAAATGAATGATGCAGGTGATGGTGTGACCAAAGTCCGCGCCCATAGGCAAGCCCACCCTGCAGTGACCAAGTACAGAGTCTTGGACAGCAGCAGTGGTTGCAGCCTCGTGGAGCTCCAGCCTTTTACTGAAGTGAAGCACCAGATGAGGGTTCACATGGCACTTGCTCTGACATGCCCCATTCTTGGTGACCACAAATATTCCCACTGGAGCAAACTGGCACCCCAGAAATTACCCGACCACGTGCTGGGAAAGCTTGGATTGGAACAGAGCAAGATCCGGCATGTTCCTCTACATGTGCTCGCTCGACAGCTGACGCTGCCAGGTACCAATGGAGCCGACGTCAACGTGTCCTGTCCCCTGCCTAAATACTTCACACAAACGTTGAATCGACTGCATTTAACCCTTCCTGACAAGAAAGACAAATAACCACctcttcgttttttttttgttaaattcttAGCAATCCAAGTGATGTCTAAATGTTTTGGGCATCGGTTGTCAAGGATTTCAGACTGCAACGTGGCTGAAAAGTGTATCATCCTAAATGCAGAATTAAATCAAGCTGCGTTATTGTGAGGTTATGTGAAATTATCAAATGGAAAATGACTGTACAGTGCTAaactcatttttctttttagtaatAAACAAAGAACTGTATCAAC

Function

GO:

id name namespace
GO:0001522 pseudouridine synthesis biological_process
GO:0003723 RNA binding molecular_function
GO:0009982 pseudouridine synthase activity molecular_function

KEGG:

id description
K22538 RPUSD4; mitochondrial RNA pseudouridine synthase RPUSD4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53120 lncRNA upstream 18139 17620723 ~ 17622507 (+) True G39588
TU53106 lncRNA upstream 33132 17606965 ~ 17607514 (+) True G39580
TU53105 lncRNA upstream 33830 17605823 ~ 17606816 (+) True G39579
TU53040 lncRNA upstream 49661 17589710 ~ 17590985 (+) True G39533
TU53025 lncRNA upstream 108722 17531522 ~ 17531924 (+) True G39522
TU53181 lncRNA downstream 40089 17684994 ~ 17686581 (+) True G39626
TU53179 lncRNA downstream 40566 17685471 ~ 17686581 (+) False G39626
TU53180 lncRNA downstream 40566 17685471 ~ 17686581 (+) False G39626
TU53185 lncRNA downstream 44899 17689804 ~ 17690576 (+) True G39630
TU53191 lncRNA downstream 70507 17715412 ~ 17722348 (+) True G39633
XM_039798123.1 mRNA upstream 22698 17610316 ~ 17617948 (+) True LOC120557609
XM_039798158.1 mRNA upstream 35552 17602657 ~ 17605094 (+) True ndufaf3
XM_039798086.1 mRNA upstream 61730 17557920 ~ 17578916 (+) True si:ch1073-335m2.2
XM_039798087.1 mRNA upstream 61730 17557920 ~ 17578916 (+) False si:ch1073-335m2.2
XM_039798088.1 mRNA upstream 61730 17561346 ~ 17578916 (+) False si:ch1073-335m2.2
XM_039798100.1 mRNA downstream 9718 17654623 ~ 17658625 (+) False LOC120557598
XM_039798099.1 mRNA downstream 9997 17654902 ~ 17658625 (+) True LOC120557598
XM_039798107.1 mRNA downstream 18356 17663261 ~ 17680433 (+) False tmcc1b
XM_039798109.1 mRNA downstream 18356 17663261 ~ 17680433 (+) False tmcc1b
XM_039798108.1 mRNA downstream 19885 17664790 ~ 17680433 (+) True tmcc1b
TU53107 other upstream 31430 17607930 ~ 17609216 (+) True G39581
TU52834 other upstream 442429 17193221 ~ 17198217 (+) False srsf3b
XR_005639081.1 other downstream 248388 17893293 ~ 17893420 (+) True LOC120558252
XR_005638976.1 other downstream 259793 17904698 ~ 17926887 (+) False wnk2
TU53438 other downstream 544710 18189615 ~ 18193926 (+) False tusc2b
TU53439 other downstream 544710 18189615 ~ 18193926 (+) False tusc2b
XR_005639014.1 other downstream 570801 18215706 ~ 18226039 (+) False LOC120557740

Expression Profile