RNA id: TCONS_00073884


Basic Information

Item Value
RNA id TCONS_00073884
length 2122
RNA type mRNA
GC content 0.42
exon number 7
gene id XLOC_037625
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 7275185 ~ 7287375 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAAACGTCTAAACATACTGTAGCGTCTGATTCAAAGCAAATGTTTTCTCTCGTAAAGTTGTTTTCTCGGTGTAATACAGTCGACGATACattcttttaattcattttaacaaaataaatgcgTTTCTATTGATTAGTGTAACTTCAAACTACAAACGCCTCTAAATCTGATTGTTTTGATTTGTTGAATGGCGCTGCTAATGGTATGCCTTTAACGATTACTGTCAGCAGAGCAGTCATCATCATCTGTGTTGTTGACGGGGGCTCATGGCTCAGGATCTGCTGCCGGGTGTGGAGAGCTCCGCGGTGTCCGTCCTGAAGAGAGCCGTGCAGCTCGACAACTGCTCCCGCTTTCAGGAGGCGCTGGTCTGCTACCAGGAGGGCATTCAGCTGCTGCTGGACGTGCTCAAAGCTGTAAAAGATGAAGCGAAGAAGATGCACTACAGAGAGAAGATCAAGGGTTACATGGAAAGAGCAGAACAGATCAAGGAGCACACCACCAAGCTAAAAGAAGAGGGTAAATACCACGAGCAGATAAAGATAGCAGACAGCTCCACTGGTTACAGCTATGAATCCCTCTTCAAGCCGTACATCACAGATGGACTGACTGAAGTCTGGGTGGAAGACCCATATGTACGGCACGTCCATCAGTTGTATAATTTCCTCCGTTTCTGTGAGATGCTGCTGAAATGTCCATCTACAGTGAAGACCATTCACCTTCTGACCTCACAGGATGAGGACAGCTCCACTCAACAAAGCAGTGCTCTGGCAGAAATGAAGCAGTCGCTATTGAGTAAAGATATCTGTCTGGACATTCAGTACTCCTCTACGATTCATGACCGAGAGATCAGGTTTAACAACGGTTGGATTATTAAGATCGGCAGGGGACTCGATTATTTCAAAAAACCAAAGGGTCGCTTCTCTGTTGGATACTGTGACTATGATTTGAGAGAGTGTCATGAGACTACAGTTGACATTTTTCATACCAAACACACCAAGAAGACCTAATCTTGCTTGCGAAAGCTTTTCCACTGCCTGACATATTTACGGGACTTCATTTGCAATCCGCAGGCCTACGTGGATGACTGGAAATGTGCCTTTTGATCCCATTTTAAGCTTTTAAAAGATGCGAaagaactgatttatttacttttacatgCTTCTATCTGAATTGCAGGGGAATATGCAGAGGCTTATTCTGTAACTTGTATGAGttttttattaaagggatagttcacacaaaattgaaCATTTCTGCACTGTTTTTtgtccctcaagtggttccaaacctttatgtttcctcgttttgttaaacacaaaagaagatatatttaagaaagctgaaaaccaatcattgacttccataagatgaaaaacaaccctgctgaaaaatccagcttaaaccagcctaggctggttggctggttttagctggttgatgaggctggttttagaggggtttgtgCCATttacaggctggtttccagctatttccagcctggtcttagctggtcaggctgaaaaatgacctgctaaaaccagcttgaccaccctagccaggctgagagcccagccaaaaccagctatgtccagcttaaaccaggctggtcaagctggttttagctggattaagctggtcatttttcagcctgaccagctaagaccaggctgtaaatggctgaaaaccagcctggaaatggccaacacccctctaaaaccaggctggtcaaccaactaaaaccagccaaccagcctaggctggtttaagctggatttttaagtagggaaatactttgaaagtcaACGGTTGCAGGTTTTTAActtcaaaatatattcctttgtgtttaacagaagaaaggaactcttaaaggtttgaatcaaataaaagagttattaaataatgacagaaatgtCACTTTTGGGCTGAACAATTTCCCTCAAACTTCTGTTCACTGAAATGTATGTTTACTTGTTCTGCTTCTGTAACTAttgtaaaaagtacatttgtaaataaaatgtgtCTAATATTTCTGTCACCATTATATAATGTGCCCTTGATTCAAACCGTAAAGGTGAGCTGTTTTACTTGCGATGCTGATTTCAATAAACGTTTTGCACTGTA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-923 Predicted to be involved in midbody abscission. Predicted to colocalize with midbody. Orthologous to human MITD1 (microtubule interacting and trafficking domain containing 1).

Ensembl:

ensembl_id ENSDART00000128352

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00074961 lncRNA downstream 726389 6531549 ~ 6548796 (-) True XLOC_037614
TCONS_00073869 lncRNA downstream 773092 6414784 ~ 6502093 (-) True XLOC_037612
TCONS_00075290 lncRNA downstream 2229196 5044975 ~ 5045989 (-) True XLOC_037603
TCONS_00073852 lncRNA downstream 2231097 5043087 ~ 5044088 (-) False XLOC_037603
TCONS_00075289 lncRNA downstream 2407746 4866100 ~ 4867439 (-) True XLOC_037602
TCONS_00073887 lncRNA upstream 70444 7357819 ~ 7359484 (-) True XLOC_037626
TCONS_00075291 lncRNA upstream 211885 7499260 ~ 7505531 (-) True XLOC_037631
TCONS_00075292 lncRNA upstream 654394 7941769 ~ 7942597 (-) True XLOC_037636
TCONS_00075293 lncRNA upstream 872966 8160341 ~ 8163995 (-) True XLOC_037637
TCONS_00075294 lncRNA upstream 996780 8284155 ~ 8286208 (-) True XLOC_037638
TCONS_00073883 mRNA downstream 17308 7240896 ~ 7257877 (-) True XLOC_037624
TCONS_00073882 mRNA downstream 36346 7228083 ~ 7238839 (-) True XLOC_037623
TCONS_00073880 mRNA downstream 61413 7091028 ~ 7213772 (-) False XLOC_037622
TCONS_00073879 mRNA downstream 61413 7091028 ~ 7213772 (-) False XLOC_037622
TCONS_00073881 mRNA downstream 62212 7096995 ~ 7212973 (-) True XLOC_037622
TCONS_00073888 mRNA upstream 84587 7371962 ~ 7378566 (-) True XLOC_037627
TCONS_00073889 mRNA upstream 102832 7390207 ~ 7390388 (-) True XLOC_037628
TCONS_00073890 mRNA upstream 106854 7394229 ~ 7394412 (-) True XLOC_037629
TCONS_00073891 mRNA upstream 123423 7410798 ~ 7421135 (-) False XLOC_037630
TCONS_00073893 mRNA upstream 123423 7410798 ~ 7444590 (-) False XLOC_037630
TCONS_00073875 other downstream 557384 6717677 ~ 6717801 (-) True XLOC_037618
TCONS_00073868 other downstream 865914 6409157 ~ 6409271 (-) True XLOC_037613
TCONS_00073841 other downstream 2828081 4443918 ~ 4447104 (-) True XLOC_037598
TCONS_00073830 other downstream 3755474 3508318 ~ 3519711 (-) True XLOC_037592
TCONS_00073827 other downstream 3778606 3490831 ~ 3496579 (-) True XLOC_037591
TCONS_00073897 other upstream 235060 7522435 ~ 7539023 (-) True XLOC_037632
TCONS_00073901 other upstream 354385 7641760 ~ 7655301 (-) True XLOC_037633
TCONS_00073935 other upstream 2456184 9743559 ~ 9805319 (-) False XLOC_037657
TCONS_00073936 other upstream 2482960 9770335 ~ 9805319 (-) True XLOC_037657
TCONS_00073961 other upstream 3558543 10845918 ~ 10846549 (-) True XLOC_037667

Expression Profile

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