RNA id: XM_039798136.1


Basic Information

Item Value
RNA id XM_039798136.1
length 2846
RNA type mRNA
GC content 0.46
exon number 7
gene id slc25a34
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 17533065 ~ 17542138 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgaaagacaaccgtttatcccgcccctcggattgagccctgctaatgACACTCCACCCCCCTCTTTGACCAACAATAACCTTTTACCCAGACAGCTCCTATAGGACCAGAGCTGGGGGCAGTTTAGAGTTTAGAGCCATTTGATTGGTGCAGAATCGGGCATATGGCGATGTGGTAGAGAGGACTCAAACTGTATTGGCTTTGGTAAGAGTCAATGGGAGGAGACTTTGACAATGAATGTGCTGAGGGCACATGTTTACAATGATGGGCAAGAGAGGAAAACTGGAGCTGCACATGATCACCAAACACTATGGTGCCTCTTTTGAACAGACTGACAGAAAATCACTGCAGAAGGACACCAAAGAGGCGCGTTGACCTGCAGTGTCACaggaaaaacatgacaaaaagaTATTAGATAAGTTAGCACAACAGCTGATAGCATTTGTTTCTGACTTCACTGTTCTGTACCAAGTACAACACACTCTTCTTGTTCCCTAACAAACTGACACAAGGGGGACAAGTCATCACAAGGACTAACAAACACTCCTCAGGGATGACCAGTGCTCAGCTGTTGAAGACTTCACCAGAAGAGTCTGCGTTTGGTGCCCAGCCTTCCAGGATGGCATCCACTGGCGGTGTCCTTGGCTCCTCACCTCCCCCTGCAGCTGTCTGGCCTCCTCTGGACTTTGCCCTGGGCGCTCTTTCCTGCTGCGCGGCCTGTGTGTTCACCAATCCCCTGGAGGTTGTAAAGACCCGTCTGCAGCTTCAGGGAGAGCTGCGTGCACGGGGGTCCTACCAGAGACACTATCGTGGAGTTCTGCAGGCCCTCTGGGTGGTAGGCCGCACAGACGGGCTGCGGGGCCTGCAGAAAGGGCTCTCAGTCGGGCTGATTTACCAGGGTGTGATGAACGGTGTGAGGCTGGGCTCCTACTCCTACTGTGAAGCTCTGGGTATCACCTCGTTCCATGGGGGGAGTCTGCTGTCAGGGGCAGGGGTTGGGGCGCTGGGTGCCTTGATTGCCTCTCCTGCCTACCTGGTGAAGACCCACCTGCAGGCTCAGACTGTGGAAGCCATAGCAGTAGGCCACCAGCATAACCATCTGGGGGTGTCTGACGCCTTTGTTACCATCTACAGAAGAGACGGTTTAATTGGTCTTTGGAGGGGTGTGAACGGGGCCGTGCCTCGAGTCATGGTGGGATCAGCTGCTCAACTGGCAACATTCACCTCGGCCAAGGACTGGGTGTCACATTCCCAGTGGTTTAGTCCAAACAGCTGTCTTACGGCTTTGATAGCCGCCATGATCAGTGGAGTCGCTGTGGCGATCAGCATGACACCATTTGACGTCATTAGTACCCGGCTCTACAACCAGCCAGTGGATGAGTTTCGTAAAGGGCGTCTGTACCATGGATTTTCTGATTGTTTGCTGAAGGTGTGCCAAGCTGAGGGCCTGCTGGGGTTGTATAAAGGCATGGGCCCTGTCTTTGTGCGCTTGGCCCCACACACAGTGCTCAGCATGCTGTTCTGGGATCTGATGAGGCAACAGACAGTGAAGAACAACCAGAGCCAGGGAAGGAGCTAAAACATCCCTGCGCATGATTGACAGGACTCAGTCACAACTATTGAAGTTGTCCACCAATTAAGGAAACACTGAATTCAAGGTGTGCGCTTTTTCGTTTTCTAGCAGAAcgttagataagaagattgataccactctcatgtctgtacagtaaatatgaagctacaaccagcacctagcttagcataaatactggaaacagGAGAAACAGCAAGCCTGGATCTGTCCAACTGTAATCAAATCCAAATAGCAAGACCTCTGaaactcactaattaacacaaagttaaaaaaatatctgaAGTGTCAAAATGTTTGTCGCTTTACATGAGTTAATCATGACAGTAACTTCCTGGAGGCTCCGCTGTCAACTGCTAAAGGCCAAGAAACATAACATAACTCCCGTCCATAAAACGGAAAATTGTTTTTAGTGGGCTGTATAGGTATGGTAGGTGGATTTTAGAATAGATCTTTGTCATTGTTTCACAACAACGAAACACAGTTTAGCAGCTCTCAGTTTAAATAACAGACAAATAGAAATATAAagtttaaattgtaaaatataaaataactaTCACAATTCAAACTAAATCAAGATAAATAAACACAATGAGGTGGCActatatttttgtacttttggacagagccaggctaactgTTTCCAGTTTTTGTGCTAAGATAGGCTAACCAGCCGCTGGCTGTAGCTTCGTGTTTACTGTAAAGACATTAGTggttgatcttctcatctaactctctgtcaGAAAGTGAATACGCATATTTAGAACAATTAAGAGACTCACTCTGTCTCAAGCAAAGCAGATTGATGAGCATTAAAGCACTTGATGAAGATGGGCACATGTTGCACAGGCTCTAATTTCAATATCAGGAGTTCCTGTCAAATTTCCCAAATGCATGAAAATGCTGTTTAACTATCAGGTTTTACCTTTTAATACCTCAATTGATCAATTTACAAGCAATGTCTTGGGCTTTCATATGTCCTCTTGCAGCAAAGCTGAAACGAGCAAAGTAAGATCCACGTGGCTTGCAGCCATATCAATGGATGCCACCACACGCAGATGAAGATGAGATGAAGAAGTCTGGATTATTAAAACAGAAACTCTGTATTCCATGTTTGTAGCCCTGTGGCTGCTGTGATTTTTCACaccttaaaacataatttacTGACACATTGATCTAAGGTTTTTATGTACAGAAATGTGAACTATTTTTGAACAGCAGTGgataataataaatcattttttgtatAAAAAGCA

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53025 lncRNA upstream 2156 17531522 ~ 17531924 (+) True G39522
TU53019 lncRNA upstream 21249 17510870 ~ 17512831 (+) True G39516
TU53012 lncRNA upstream 32856 17500063 ~ 17501224 (+) True G39509
TU52988 lncRNA upstream 67484 17466087 ~ 17466596 (+) True G39489
TU52983 lncRNA upstream 69302 17463538 ~ 17464778 (+) True G39484
TU53040 lncRNA downstream 47572 17589710 ~ 17590985 (+) True G39533
TU53105 lncRNA downstream 63685 17605823 ~ 17606816 (+) True G39579
TU53106 lncRNA downstream 64827 17606965 ~ 17607514 (+) True G39580
TU53120 lncRNA downstream 78585 17620723 ~ 17622507 (+) True G39588
TU53181 lncRNA downstream 142856 17684994 ~ 17686581 (+) True G39626
XM_039798104.1 mRNA upstream 2629 17525015 ~ 17531451 (+) False fbxo42
XM_039798103.1 mRNA upstream 2629 17525063 ~ 17531451 (+) True fbxo42
XM_039798160.1 mRNA upstream 47203 17480859 ~ 17486877 (+) True mfap2
XM_039798141.1 mRNA upstream 53988 17473313 ~ 17480092 (+) True sdhb
XM_039798164.1 mRNA upstream 71358 17458977 ~ 17462722 (+) True LOC120557636
XM_039798134.1 mRNA downstream 70 17542208 ~ 17545551 (+) True LOC120557614
XM_039798131.1 mRNA downstream 7385 17549523 ~ 17555364 (+) False fblim1
XM_039798129.1 mRNA downstream 7387 17549525 ~ 17555364 (+) True fblim1
XM_039798086.1 mRNA downstream 15782 17557920 ~ 17578916 (+) True si:ch1073-335m2.2
XM_039798087.1 mRNA downstream 15782 17557920 ~ 17578916 (+) False si:ch1073-335m2.2
TU52833 other upstream 335863 17193221 ~ 17198217 (+) False srsf3b
TU53107 other downstream 65792 17607930 ~ 17609216 (+) True G39581
XR_005639081.1 other downstream 351155 17893293 ~ 17893420 (+) True LOC120558252
XR_005638976.1 other downstream 362560 17904698 ~ 17926887 (+) False wnk2
TU53438 other downstream 647477 18189615 ~ 18193926 (+) False tusc2b
TU53439 other downstream 647477 18189615 ~ 18193926 (+) False tusc2b

Expression Profile