RNA id: XM_039798139.1


Basic Information

Item Value
RNA id XM_039798139.1
length 1846
RNA type mRNA
GC content 0.44
exon number 5
gene id ccnd3
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 17235220 ~ 17239904 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGACctgaggctagctagctacatagcCGCGGATCCTAGCTACACCATTAGGTTCACAGTTCTGACAAATTCCAGATTTTTCTTATAGACCAGGATGGAATTGATGCAATTTTCTGTAAAATACTAATCTGACGCCCAGTTGAGCAGTTTATAAGGACGCCTTAAAACAAGGTGGCGGTTTGTGAACGTTACAGGAGAGGTAACTAGCATAGCTAGCCAACATTAGCTAACTAAAATAACGGTTAACCGCTAGCTAGCTTAACTGCATAATGTTATAAATACGGTATATTGATATGTTAATGATTAGTGGAAGCCATACTGAATGCTACTCTCTATAACTTCGTCGAATGGATCTTTGTGAGGATGGACGGCTTTAGTGCATCCGGAGATATAAATGCCGGTGAAACGGGACACGGTGTGGTTCTCCGGGCGGGCAGCGACCATCCCGTGACCAGCGACCTCAGAACACTGCACAACCTGACGGCCCTGGAGAAGACCTGCCGGGTGTCTCCTTACTTTGGCGTAGTCCAGACAGACATCCAGCCACACATGCGAAGGATACTGGCAGTATGGATGTTTCAGGTGTGTGAGGAGCAGAAATGTGAGGAGGAGGTGTTTCCACTGGCAGCGCATTACCTGGACTGCTACCTGAGCCATTTCGCCATTGAAAAGTTCAACCTGCAGCTTTTAGGTTGTGTTTGCATGTTCCTGGCCTCCAAAATGAGAGAGACCGTCCATCTGACTGCCAGCAAGCTTTGTATCTACACAGACAACTCAATTTCAGTCTCAGACATTCTGcAGTGGGAGGTAGCAGTGGTGTCCAGGTTAGACTGGTGTCTGGCGTCTGTGGTACCCTCTGACTTCCTGGAGCCAGTTCTTCATGCTCTCCCCTTGGTTCGGCCCCACCACCTTCCTAACATGCGCAGGCATGTTCACTCTTACATTGCTGTGGCAGCCACTGACTGCAGGTTTTCAGTGTTCTTGCCCTCCACTGTTGCATGTGCCTGCGTGAGCATTGCCACGCAGAGGCTGAAGTTAGTGGACGCTGCTGTCTCCTCTGATTCAGTGATGACGTTTTTGGCCAACCTTTTGGTCATTGATCTGAGCACGGTCATTCTCTGCTATGACCAGCTAGGGAGTGTGTTGGAGCGCAGCCTGCCCTCTTGTTTCCAGGCTAGTGTTTGCAGATCAGGAGCTCACAGCTCAGAGATCAGCTACACCCCTGCTGACTTTCAGGATGTTGTATTGACACCAGTGGCATCAACCCAGGAAATCAAGCTAAAGCACACCTCCCTGACATGAATGGCTAGAATGAATTGTAAATTCACTGCCATGAAGCACAACAAGAAGCCTAAATACCAGGCAAAATGTGTCTTAAGGCCATTTCTCCTTAATCTTAATTGTTCTTTTGCAAGTTGATTGTTTTGGAGATCCCTCTGTGACGTGAAGAGCTGTCACTGTTTAACATTTGTTTGTCCAACCTGTTGCTGCTCgttttaaaatattttgcaATTGCCAAAGCAGCTTTGAAAGATGGAATATTTCAGATTCATGATACATTAACGTTGTGATATTGACAGTTGAATTGCACTGAATCCTAATAGCAATGtttgcacattttaaatgtattatccTCTATTCATATGTATTCGTATATATTAGCACTTACCTGGATCCATTGATATTTTAATATAAGGTTTTTATCTGGACAGTTTCGATAAGTTTAAATAGATGTTTCTGCATGGTTTCAAAAGAGTAATGAATTCCTTTGTGGCTATAAATCAATACTGTCATGACATAAAAgacaatacaaaacatttgtATGTAGGTCACTAACGACATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52816 lncRNA upstream 75984 17157903 ~ 17159236 (+) True G39358
TU52750 lncRNA upstream 152644 17080666 ~ 17082576 (+) True G39308
TU52745 lncRNA upstream 181269 17049797 ~ 17053951 (+) True G39304
TU52744 lncRNA upstream 181269 17050659 ~ 17053951 (+) False G39304
TU52742 lncRNA upstream 186855 17047935 ~ 17048365 (+) True G39302
TU52918 lncRNA downstream 48535 17288439 ~ 17289516 (+) True G39427
TU52924 lncRNA downstream 58088 17297992 ~ 17298192 (+) True G39433
TU52930 lncRNA downstream 67151 17307055 ~ 17307707 (+) True G39437
TU52926 lncRNA downstream 111802 17351706 ~ 17360942 (+) False G39434
TU52925 lncRNA downstream 115253 17355157 ~ 17357586 (+) True G39434
XM_039798122.1 mRNA upstream 462 17229640 ~ 17234758 (+) True bysl
XM_039798113.1 mRNA upstream 19063 17209900 ~ 17216157 (+) True tmcc2
XM_039798112.1 mRNA upstream 19063 17209900 ~ 17216157 (+) False tmcc2
XM_039798114.1 mRNA upstream 19063 17209900 ~ 17216157 (+) False tmcc2
XM_039798115.1 mRNA upstream 19063 17212517 ~ 17216157 (+) False tmcc2
XM_039798096.1 mRNA downstream 18287 17258191 ~ 17284292 (+) True dstyk
XM_039798166.1 mRNA downstream 131579 17371483 ~ 17377553 (+) True LOC120557637
XM_039798152.1 mRNA downstream 138275 17378179 ~ 17385774 (+) False nbl1
XM_039798153.1 mRNA downstream 140088 17379992 ~ 17385774 (+) True nbl1
XM_039798159.1 mRNA downstream 150633 17390537 ~ 17397524 (+) True LOC120557631
TU52833 other upstream 37003 17193221 ~ 17198217 (+) False srsf3b
TU53107 other downstream 368026 17607930 ~ 17609216 (+) True G39581
XR_005639081.1 other downstream 653389 17893293 ~ 17893420 (+) True LOC120558252
XR_005638976.1 other downstream 664794 17904698 ~ 17926887 (+) False wnk2
TU53438 other downstream 949711 18189615 ~ 18193926 (+) False tusc2b
TU53439 other downstream 949711 18189615 ~ 18193926 (+) False tusc2b

Expression Profile