RNA id: XM_039798155.1


Basic Information

Item Value
RNA id XM_039798155.1
length 1669
RNA type mRNA
GC content 0.45
exon number 5
gene id ssu72
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 17452822 ~ 17457991 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAACGGGGCGCCGCCATTTTAACTTCCTGTATCAAAAGAAAGCGAGTCAGTCGCACAGCATTTGTACTCGAAACGTTTTCTTAGTTAGTGTAACGAAAGGGgtctgtcttgtttttttttttcagggagCAAACTAACTACCTCTGTATAGTTTCTGACAGCTTGTGTCGGTTAGTTTCAGCCGGAGAGACGCAATGCCGAGCCACCCGCTGCGTGTAGCGGTTGTGTGCTCGAGCAACCAGAACCGCAGTATGGAAGCGCACAGTATCCTCAGCAAACGTGGATTTGATGTGCGTTCATTTGGGACAGGGTCTCACGTGAAGCTACCCGGTCCTGCCCCGGATAAGCCAAATGTGTATGACTTCAAAACGACATATGTACAGATGTACAACGACTTGGTCCGCAAGGACAAGGAACTATACACACAGAATGGCATCCTGCACATGCTGGACCGCAACAAGCGCATCAAATCAAAGCCAGAGCGCTTTCAAAGCTGCAAGGAGAAGTTTGACCTGGTCATCACATGTGAAGAGAGAGTCTATGACCAAGTGCTGGAGGATCTGAATTCAAGAGAGCAGGAGACTCTACAGCCTGTGCATGTTATCAATGTAGACATTCAGGATAACCACGAGGAAGCCACGCTGGGCGCCTTCCTCATCTGTGAGCTGTGTCAATGTATCCAGCACACTGAGGACATGGAGGATGAAATGGATGAGCTCATACAAGAGTTTGAGGAGAAGAGCAACAGGCCTTTTCTTCACACTGtctgtttctactgatacacaATAGAAATTTGCAATAAACGCAGACCCGGATCACAAGCAATCAAAcaatatggacacacacacacacacacacacacacacacacacacacacttcttactCCTCACTCCTCAGTCATCTACAAcactctttatatacagtctatgccacaacacaatacatgcacattgtgtgcctacacacacacacacacacacacacctttgggTCAGGACCTAAAAAATGGCTGCTGGTGATGATGGGTCTTTCCTCTATGCAGAGGACGGACTCGCTGCTCTCGCGCTGCCTTTATTTCTCCGGATCAAGGTCAGGCCAAGGAGGTCCTCCCTCAATCCCAGTCCAGTGAAACCGCTCGACCATGTCTCCTCAGGGAGAGCCATTAACACCCACACCCTTGATTCAACAACTCCTTTACCAGTCCCTTTTGATTTTGTTCAGTACAGCATATTAacgctgttttttgtttttggcaaattatatataattgtaATTCATTTAAGTCAGATTTTTATTGCTGACCTGGGGCAGTGTAATTGTTTATCTCGGGGTCAGACAGGAAGGGGAGAATGAACtgaatgcatgtgtatgtgcgaCCATGTGTTGTAGATTAGTTTGGATTAAGTTTAAGTGGGTGGGCTGATAATGAATAACCAAACCTAGACCTCTCTAAGGCTCTCCTCCAGTGTGTTTCCAATATAATGTGTTGATTCATATTTAAACTTGGATATGCTGTTTTTCAGGgcgtagtattttttttttcttttgtaaatgtTAAAGAATTGAAGCATTGTAATTATTTGCAAACTGCGAGCTCAGCTCAGAGTGCCTGATTTTTCTGTATGTACATATGAATCCTCTAAAGAAAGAAACCTCTCTAAAAAACA

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0016311 dephosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52927 lncRNA upstream 57000 17355157 ~ 17395822 (+) False G39434
TU52941 lncRNA upstream 75262 17371536 ~ 17377560 (+) False LOC120557637
TU52926 lncRNA upstream 91880 17351706 ~ 17360942 (+) False G39434
TU52925 lncRNA upstream 95236 17355157 ~ 17357586 (+) True G39434
TU52930 lncRNA upstream 145115 17307055 ~ 17307707 (+) True G39437
TU52985 lncRNA downstream 3873 17461864 ~ 17462250 (+) True G39486
TU52983 lncRNA downstream 5547 17463538 ~ 17464778 (+) True G39484
TU52988 lncRNA downstream 8096 17466087 ~ 17466596 (+) True G39489
TU53012 lncRNA downstream 42072 17500063 ~ 17501224 (+) True G39509
TU53019 lncRNA downstream 52879 17510870 ~ 17512831 (+) True G39516
XM_039798135.1 mRNA upstream 765 17449728 ~ 17452057 (+) True fndc10
XM_039798140.1 mRNA upstream 6829 17442651 ~ 17445993 (+) True LOC120557619
XM_039798116.1 mRNA upstream 16257 17426082 ~ 17436565 (+) True LOC120557606
XM_039798117.1 mRNA upstream 16257 17426082 ~ 17436565 (+) False LOC120557606
XM_039798159.1 mRNA upstream 55298 17390537 ~ 17397524 (+) True LOC120557631
XM_039798165.1 mRNA downstream 933 17458924 ~ 17462722 (+) False LOC120557636
XM_039798164.1 mRNA downstream 986 17458977 ~ 17462722 (+) True LOC120557636
XM_039798141.1 mRNA downstream 15322 17473313 ~ 17480092 (+) True sdhb
XM_039798160.1 mRNA downstream 22868 17480859 ~ 17486877 (+) True mfap2
XM_039798104.1 mRNA downstream 67024 17525015 ~ 17531451 (+) False fbxo42
TU52833 other upstream 254605 17193221 ~ 17198217 (+) False srsf3b
TU53107 other downstream 149939 17607930 ~ 17609216 (+) True G39581
XR_005639081.1 other downstream 435302 17893293 ~ 17893420 (+) True LOC120558252
XR_005638976.1 other downstream 446707 17904698 ~ 17926887 (+) False wnk2
TU53438 other downstream 731624 18189615 ~ 18193926 (+) False tusc2b
TU53439 other downstream 731624 18189615 ~ 18193926 (+) False tusc2b

Expression Profile