RNA id: XM_039798160.1


Basic Information

Item Value
RNA id XM_039798160.1
length 1598
RNA type mRNA
GC content 0.47
exon number 9
gene id mfap2
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 17480859 ~ 17486877 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATATGTGATTTGCTGTTGTATTTAGATTTTGTTTACGCATCTCAGCTCCTGCTGACATGTTGGTATTCACATAGGTCACCCGGTCACCTAGCAACAGGTGATAGCAGTGATTCGGCAACCAGCAGCAGCTACTAATACCTGGTCAGTTCATCGATACTTTTGATCCCAGCGTCGAAGGATCTGACGGGTAGCCAGTCTCGGGATATCCATGATGGCGTTGCGGGTCGGTGTTGGGACCGGGGGACGGAGGCTGGGACTGGACGGGGAGGAGACTACAGATGCGGGGTGGTACAATGTGGCGCTGCGAGGTCCTCCTGCACTCAGAGGACGCATGAGAGCTGAGGATAGCCGGAGCAAACTGAAGCAAAGTTTGGTGTTAAAGTCAGTCTACCTCCCAGAGTGACCATGAGAGTCCTCCTACTCATCTGCATGCCAGTTCTGCTGCTTGCCCAGCCTCAGTACCAGGAACCGTTTCCTTTTTTGGATGAATATGGGCCAGACTATTTTCAAGTGTCTGAAAATCCTGAATCTCTTCCTGGAACCTACCAGCAGCAGGTTCGACTCGAGCCAGTGGTCCGTCCAGAAGATTCAGAGTCTGATTTGGAGACGGAGCCCACAGAGCCTGGCCCTCTTGATTGCAGAGAGGAGCAGTATCCCTGCACCAGACTCTACTCTGTTCACAAGCCATGCAAGCAGTGCCTGAACAGCCTCTGCTTCTACAGTTTGCGACGGGTGTATGTCATCAACAAGGAGGTTTGCGTGAGGACCGTGTGTGCACATGAAGAGCTGCTCAGAGCGGACCTGTGCCGTGATCAGTTCTCTCGCTGCGGCGTTGCGGCGCAGAGCGGCCAGTGTGCATCACTAGGACCAAGCTGTGGGAAGAGCTGTGGTGGCTGCTGATTGACTACAGAGATCACCTGCCCAGATACTGCCGCTTTTTCTACCACTCACCCAcatcctctttcttcctcccaGTTTCTCCTCACTTTGCCTTTTGACTCTTCCTGTACAACTTATTACTCCTGTGCGAaaagcattttgtgtgtgtgtttatctttgtCTTTTCACATGTATGTTTGCCCAGTAGATCctgtgtgtatggatgaatatCCTCCAAAGAACATTGATGATTGTATTAAATCACTGGTGCTATAAAATCATCACACTGGTGCTATAAAAACTATTAGAGATGCACATAAAACTGTGGAACATCttcaattgtttttgtttttggcatACTGTACCATATTAATCTCATGCTTTGTTGATATGTTACTGTACTTGTGTTGAAAAGCAGCCATTCTCATGATAATCAACTCATCAATGGTGGCCACTGTGCACTGACATCAGACAAAACTAATCAATATCGAGCCATGCTAGATCATGAGATGTGTGAAGAAACAGGTGGTGAGTGACCTCAGTTCATGTACTACTGCCACCTGGATCTGTGCTTAGCAACCAAGCAGCAagcttatataaatatattccaGTGGCAACAAGTGCTTTAAAAAGGCATCTCACAAACAGCCTCTACTACTGCTTTGTAAAACTGTCACTATAaagactgagaaaaaaaaataaacttttttttactaca

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52988 lncRNA upstream 14263 17466087 ~ 17466596 (+) True G39489
TU52983 lncRNA upstream 16081 17463538 ~ 17464778 (+) True G39484
TU52985 lncRNA upstream 18609 17461864 ~ 17462250 (+) True G39486
TU52927 lncRNA upstream 85037 17355157 ~ 17395822 (+) False G39434
TU53012 lncRNA downstream 13186 17500063 ~ 17501224 (+) True G39509
TU53019 lncRNA downstream 23993 17510870 ~ 17512831 (+) True G39516
TU53025 lncRNA downstream 44645 17531522 ~ 17531924 (+) True G39522
TU53040 lncRNA downstream 102833 17589710 ~ 17590985 (+) True G39533
TU53105 lncRNA downstream 118946 17605823 ~ 17606816 (+) True G39579
XM_039798141.1 mRNA upstream 767 17473313 ~ 17480092 (+) True sdhb
XM_039798165.1 mRNA upstream 18137 17458924 ~ 17462722 (+) False LOC120557636
XM_039798164.1 mRNA upstream 18137 17458977 ~ 17462722 (+) True LOC120557636
XM_039798155.1 mRNA upstream 22868 17452822 ~ 17457991 (+) True ssu72
XM_039798135.1 mRNA upstream 28802 17449728 ~ 17452057 (+) True fndc10
XM_039798104.1 mRNA downstream 38138 17525015 ~ 17531451 (+) False fbxo42
XM_039798103.1 mRNA downstream 38186 17525063 ~ 17531451 (+) True fbxo42
XM_039798137.1 mRNA downstream 46188 17533065 ~ 17542138 (+) True slc25a34
XM_039798136.1 mRNA downstream 47203 17534080 ~ 17542138 (+) False slc25a34
XM_039798138.1 mRNA downstream 49229 17536106 ~ 17542138 (+) False slc25a34
TU52833 other upstream 282642 17193221 ~ 17198217 (+) False srsf3b
TU53107 other downstream 121053 17607930 ~ 17609216 (+) True G39581
XR_005639081.1 other downstream 406416 17893293 ~ 17893420 (+) True LOC120558252
XR_005638976.1 other downstream 417821 17904698 ~ 17926887 (+) False wnk2
TU53438 other downstream 702738 18189615 ~ 18193926 (+) False tusc2b
TU53439 other downstream 702738 18189615 ~ 18193926 (+) False tusc2b

Expression Profile