RNA id: XM_039798164.1


Basic Information

Item Value
RNA id XM_039798164.1
length 779
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC120557636
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 17458924 ~ 17462722 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTGAACAAACTGATTAACGACGTTACCCAAGCAACcgtcagtttaaaagaaaatgacTAACGTTAAGTTGGAATTGAAATAGTTCTTGTGATCTGCTAACACGTTGCGGTAGCTGATAGTTACCTTGGTAACCTATTTTGTTTATTATAAGCAAAACAACAATGATTTGTTAATACCTGACTGGGAAAATCCATCACCGACTCTTCCCCCAGTGGTGTGGGATAGCTGAGCACGCCGGACAGAGGAGGCAGGACAGCCAGTCTCGGGGAGCCCCGTTTTCTTATCTTGGATCGAAagcactagctagctaacgAAATGAACGCGCTTTTTGGCCGCTTTCACAACTTCATCCTCCCGTTAGTGCGAGGGGCGGACGGTGTCTGCGCATGCACCTGTGGAAGGCGTCAAGTCTATCATGTTATTTCATATAATGGGGCCCAGTCCATGATGGATTCCATAGAAAACTACGTTGTAAGTGACATCATGGCCCGGCAGGAGATTAATCTGATAGTTGGACTGCTCTTGGGCCTCTGCATCAGTTTGTTCTTGCAGTGGCTGCTCGGAGTTTGCCACTCACAGCTCAAATACTGGATTTCAAACCAAATGAAAGATGTGGATTTCTGGTCATGGATGCCCAAATTAAGTAACACAAGGGAGTTGTTCAGGCAGTTACATCCAAAACACACAGAGGACTCCGGGGGGGAACATGTTGCATCTTGAGCAAGATGTGCACCATGATGTTAATGACCCATCAAGATAAAAATGTGGATTCAATTCA

Function

GO:

id name namespace
GO:0022412 cellular process involved in reproduction in multicellular organism biological_process
GO:0019538 protein metabolic process biological_process
GO:0007281 germ cell development biological_process
GO:0006508 proteolysis biological_process
GO:0003006 developmental process involved in reproduction biological_process

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko05164 Influenza A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52927 lncRNA upstream 63155 17355157 ~ 17395822 (+) False G39434
TU52941 lncRNA upstream 81417 17371536 ~ 17377560 (+) False LOC120557637
TU52926 lncRNA upstream 98035 17351706 ~ 17360942 (+) False G39434
TU52925 lncRNA upstream 101391 17355157 ~ 17357586 (+) True G39434
TU52930 lncRNA upstream 151270 17307055 ~ 17307707 (+) True G39437
TU52983 lncRNA downstream 816 17463538 ~ 17464778 (+) True G39484
TU52988 lncRNA downstream 3365 17466087 ~ 17466596 (+) True G39489
TU53012 lncRNA downstream 37341 17500063 ~ 17501224 (+) True G39509
TU53019 lncRNA downstream 48148 17510870 ~ 17512831 (+) True G39516
TU53025 lncRNA downstream 68800 17531522 ~ 17531924 (+) True G39522
XM_039798155.1 mRNA upstream 986 17452822 ~ 17457991 (+) True ssu72
XM_039798135.1 mRNA upstream 6920 17449728 ~ 17452057 (+) True fndc10
XM_039798140.1 mRNA upstream 12984 17442651 ~ 17445993 (+) True LOC120557619
XM_039798116.1 mRNA upstream 22412 17426082 ~ 17436565 (+) True LOC120557606
XM_039798141.1 mRNA downstream 10591 17473313 ~ 17480092 (+) True sdhb
XM_039798160.1 mRNA downstream 18137 17480859 ~ 17486877 (+) True mfap2
XM_039798104.1 mRNA downstream 62293 17525015 ~ 17531451 (+) False fbxo42
XM_039798103.1 mRNA downstream 62341 17525063 ~ 17531451 (+) True fbxo42
XM_039798137.1 mRNA downstream 70343 17533065 ~ 17542138 (+) True slc25a34
TU52833 other upstream 260760 17193221 ~ 17198217 (+) False srsf3b
TU53107 other downstream 145208 17607930 ~ 17609216 (+) True G39581
XR_005639081.1 other downstream 430571 17893293 ~ 17893420 (+) True LOC120558252
XR_005638976.1 other downstream 441976 17904698 ~ 17926887 (+) False wnk2
TU53438 other downstream 726893 18189615 ~ 18193926 (+) False tusc2b
TU53439 other downstream 726893 18189615 ~ 18193926 (+) False tusc2b

Expression Profile