RNA id: XM_039798168.1


Basic Information

Item Value
RNA id XM_039798168.1
length 2298
RNA type mRNA
GC content 0.44
exon number 15
gene id LOC120557639
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 18712940 ~ 18722231 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTTCAACTGCTCAAGGCAAAGTGTGCATCTTTCAGGTTGAAATGGACCAAAGACAAAACTCACAGGTGAAACAGACTGTGATGGCCCTATGGACCAGAGCAGGACACACTCAACCCAAACTTCAGGAGAGGGACCAGTGGGGCAACAAGATTGAGTTCATCCTGGCAGTAGCCGGACACATTGTCGGTCTGGGAAACGTCTGGAGGTTTCCATACCTTTGCTACAAAAATGGAGGAGgggtTTTCTTCATaccttatgttttgtttttgtttacctGTGGCATCCCACTCTTCTTCCTGGAGACATCTTTGGGCCAGTACACCAGTCAGGGTGGAATAACATGTTGGAGGAAAATCTGCCCTCTTTTTGAAGGCTTAGGTTATGGAAGCCAAGTGGTTGTTTTGTACACTGGGGTGTATTACATCATTATACTGGCTTGGACGTTTCTCTACCTGTTTTCATCCTTCAGGTCTGAGCTTCCATGGGCCAGCTGTAACAACAGCTGGAACACAGATGGCTGTTTTGAGCATGGTCACAATCAAACATCCCCTCTGCACCTGTATGGAAATGGCACGTCTTCGGTTGTAGAATTTTGGGAgAGGAGAATCTTGGGCCTGTCAGGTGGCATTGAGAAAATTGGCAATGTGCGTTGGGACCTGGCCCTTTGTCTTCTTCTTGCCTGGATGTTGTGTTACTTCTGTGTCTGGAATGGAGTAAAGTCCACAGGAAAGGTGGTCTACTTCACTGCCACATTTCCGTATGTTATGCTGGTGGTGCTGCTTGTTCGTGGTCTTACATTACCAGGGGCCAAAGACGGAATCATGTTCTACCTCTACCCAGACCCATCCCGCCTCACTGATCCGGAGGTATGGATGGATGCTGGCAGCCAAATTTTCTACTCCTATGGAGTTTGCACAGGTGTTCTGACATCATTAGGAAGTTACAACAAGTACAGCAACAACTGCTACAgTTTAACCAGCTTTGTAGCTGGCTTCGCCATTTTTTCTGTGCTCGGTTTTATGGCTAAGGAGCAAGGTGTGGATATATCAATGGTGGCTGAATCAGGTCCAGGTTTGGCATTCATTGCTTATCCTCGTGCTGTGGCACTGATGCCACTCCCCCAGCTCTGggctattttcttcttcattatGATCCTCTTTTTAGGATTAGATAGTGAGTTTGTATTACAAGAGGCACTGGTCACAACCATCTCGGACATGTATCCCGACTTCTTTCAAAGCGATTGTCGCCGTAAACTCCTTCTTCTTGCCATTTCTGTTGGAAGTTTCTTTGCTGGCCTTATGATGGTCATGGAGGGAGGCCTTTATATCTTCCAGCTGTTTGACTACTACGCCTGCAGTGGGATGACACTCCTGCTCTTTGCTGTTCTTGAGTCTGTCTGTATTGGATGGGTCTATGGTGCAGATCGTCAGTATGATAATATAAAGGACATGATTGGATATCGACCGTGGCCTTTTATGAAATATTGTTGGCAGTACTTCACACCAGCTATCTGTACTtgcACATTTCTCTTCTCCTTGGTCAAATATACTCCGCTCAAATTCAATAACACTTATGAATACCCCTGGTGGGGCTATGCCATTGGAGGATTTTTCACTCTCTCTTCAACACTTATGGTTCCTTTGTGGATGCTGTATGCTGTAAGTGTCACTCCAGGAACACTGAGACAGAGACTGAAAGTTCTGTGCACTCCAGCAAATGACTTACCTACTGCAATGCTAAAGAAGGCATTAAATACAGAAGCATTTCAGACTTTCACAGGCTTATACACACTGTGCAAGACAGAAAGTCCCAATGACAAAGGCAAAAGAGCTCTGAGATCATCCATTATCTAAACTGCAAGAAAAAAGTACTGGAACAATAAGCCTGAGGAGTGCAGATCCCAAGCAATTTTACTTGTCAGCCAAAACTGCCAAAAATAGCAATTGTTATCTGATTTTTCAGGCTGTGAATGTAAATATACTGTACGATGTCATTTCTATAACCTCTTGTGTGTAGACAATATACTGTGTATCTGATTTATGTTACTGATGATTTTAAAAATCACACTGGAATAATTTTGAGAGTGCTTATTAGTCCATATTAACATCACACGAACACCTGCTTTTCTGTTCAACTGTTTTTACCTGTACAGTAGATACTTAAATCTTTAGAATACACATCTTTCCCCAGACTTCATGTTCTTTTCCACCCCAGGCACTCCATTTCAAAAGTGTAATTTGCCTAAAACCTATTATTTTTCCTACCCAAATGTACCGAGGGATTTTTGTAAAGTA

Function

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005328 neurotransmitter molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53678 lncRNA upstream 109840 18601716 ~ 18603100 (+) True G39935
TU53677 lncRNA upstream 113711 18599024 ~ 18599229 (+) True G39934
TU53670 lncRNA upstream 138729 18573982 ~ 18574211 (+) True G39927
TU53669 lncRNA upstream 139031 18573682 ~ 18573909 (+) True G39926
TU53668 lncRNA upstream 141957 18570591 ~ 18570983 (+) True G39925
TU53857 lncRNA downstream 266213 18988444 ~ 18988684 (+) True G40049
TU53875 lncRNA downstream 331897 19054128 ~ 19058578 (+) False G40064
TU53874 lncRNA downstream 331960 19054191 ~ 19058578 (+) True G40064
TU53886 lncRNA downstream 353509 19075740 ~ 19077037 (+) True G40073
TU53931 lncRNA downstream 446605 19168836 ~ 19169391 (+) True G40104
XM_039796646.1 mRNA upstream 48355 18651305 ~ 18664585 (+) True fkbp5
XM_039796647.1 mRNA upstream 48355 18655970 ~ 18664585 (+) False fkbp5
XM_039796648.1 mRNA upstream 67823 18639859 ~ 18645117 (+) True LOC120556859
XM_039796642.1 mRNA upstream 96983 18611623 ~ 18615957 (+) True trub2
XM_039796637.1 mRNA upstream 114565 18593164 ~ 18598375 (+) True tgfa
XM_039798380.1 mRNA downstream 9868 18732099 ~ 18737859 (+) True LOC120557775
XM_039798381.1 mRNA downstream 9868 18732099 ~ 18737859 (+) False LOC120557775
XM_039796869.1 mRNA downstream 49335 18771566 ~ 18834373 (+) False cadpsb
XM_039796874.1 mRNA downstream 49335 18771566 ~ 18834373 (+) False cadpsb
XM_039796871.1 mRNA downstream 49335 18771566 ~ 18834373 (+) False cadpsb
XR_005639014.1 other upstream 486901 18215706 ~ 18226039 (+) False LOC120557740
TU53438 other upstream 519014 18189615 ~ 18193926 (+) False tusc2b
TU53439 other upstream 519014 18189615 ~ 18193926 (+) False tusc2b
XR_005638976.1 other upstream 786053 17904698 ~ 17926887 (+) False wnk2
XR_005639081.1 other upstream 819520 17893293 ~ 17893420 (+) True LOC120558252
TU54005 other downstream 602598 19324829 ~ 19326625 (+) True G40164
XR_005638959.1 other downstream 894950 19617181 ~ 19632012 (+) False LOC120557344
XR_005638958.1 other downstream 894950 19617181 ~ 19632006 (+) False LOC120557344
TU54184 other downstream 1129317 19851548 ~ 19859341 (+) True cenps
XR_005638939.1 other downstream 1195658 19917889 ~ 19923549 (+) False abhd14b

Expression Profile