RNA id: XM_039798178.1


Basic Information

Item Value
RNA id XM_039798178.1
length 2801
RNA type mRNA
GC content 0.49
exon number 11
gene id LOC120557646
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 38366059 ~ 38409274 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCAAACTGGATGTCACAAGCGACTGCCGAGCGGTTTGTCAAACCGGTCCAAAGTTGTCGAGACACGGTGAGGAGGATGAACTCAAAGACGAGGATACTGCAGCTGTGTGAAGTGTGTACGCTGTGTGAACCTCGTGTGACAAAATGATAAAGAGACGCTATGCTTTCAGCGGCTAACGGAACGCTGCTTTAACACAGGGACGGGCTAGCTGCTCCTAGCCACTTAGCATCGTCAGTTAGCATCGAGTGTCAGTTTTAAACGAGTCGAGTTGTGACTTCAGATACGACTCAAGAGGACTCTTTGTGAGGGTCCAGAAGGGGACAATATGGAGAACAAGGACAAAGTACAGATGAGGAACCACCCTCGCAGACAGTTGAAGAAGCTGAGCGAGGACAGCCTCACCAAGCAGCCGGAGGAAGTCTTTGACGTCCTGGAGAAGCTGGGCGAAGGGTCGTACGGCTGTGTGTTTAAAGCCCATTATAAAGAGACGGGCGAGATCGTAGCCATCAAACAAGTTCCCGTGGAATCTGATCTTCAGGAGATCATCAAGGAAATCTCCATCATGCAGCAGTGTAACAGTCCTCACGTTGTGCGCTACTACGGCAGctacttcaaaaacagtgacctGTGGATCGTTATGGAATATTGTGGAGCCGGATCAGTTTCTGACATCATCCGAATACGCAACAAGACGataaCAGAAGAGGAGATCGCCACCATCCTGCAGTCCACTCTGAAGGGTCTGGAGTATCTTCACTTCATGAGGAAAATCCACAGAGACATTAAAGCAGGAAACATCCTGCTGAACTCCGAGGGCCAGGCCAAACTGGCCGACTTTGGAGTTGCTGGGCAACTCACAgACACCATGGCGAAGAGAAACACGGTCATCGGCACGCCGTTCTGGATGGCTCCAGAGGTCATACAGGAGATTGGGTACAACTGCGTGGCTGACATCTGGTCCCTGGGAATAACGGCTATCGAGATGGCCGAGGGGAAGCCGCCCTACGCCGACATACATCCCATGAGGGCCATCTTCATGATTCCAACCAACCCTCCGCCAACGTTCAAGAACCCAGACCTGTGGTCTCCGTCGTTTCGAGATTTTGTCAGCCAGTGTTTGGTGAAAAACCCCGAAAACAGGGCGACGGCCACACAGCTGTTACAGCATCCGTTCATCAAGTCGGCCAAGCCCAACTCCGTCCTCCGAGCGATGATCACCGACGCCATGGAGATCAAACTGAAGAGCCAGGAGGAGGAACAGAGGGAGCAGGACGCAGAAGACGACGACAACTCGgATGAGGATGAGGTGGACCAGGGGACGATGGTGCGGGCGGGAGCGGGCGACTCGGGAACCGTCAGGGCCGCCGGCTCCTTAGCCGGTTCACTCGGCGGCACAGCTCGGACGATGATCTCACACGAGGACACGGGAACCATGCAGTCGCAGCTCGGCACCATGGTCATCAACTCGGAGGACGAGGACGAGGAAGAAGCTGGAACTATGAAAAGGAGAGACGAGACGATGCAGCCAGCCAAGCCGTCCTTCCTCGAGTACTTTGagcagaaagagaaggaggcCAACAGTCACAATGACGGAGGAGGACAAAACAACGCAGATAACCGCAAACTGCCCGGTGAAGGAGACTTTGAAGTGGTGAACTCGTGGTCGGTGGAGGAGCTGCGACTGCGCCTGGCGTCTCTGGACCCCCAGATGGAGCAGGAGATCGAGGAGATCCGCCAGCGCTACCAGACCAAGAGGCAGCCCATCCTCGACGCCATTGAAGCCAAAAAACGCCGGCAGCAGAACTTCTGAGAAAAGGAACTGCCGAGCGGAACGActggatgtttatttttatttttttttattatatctcTTTGTGTTCTCTGCAGCAGTTTGGTGAAATGTCAGCAAGACAGCCGAGGTTTCACAAAAACTCCATTGCTGAGGTTCGTCCAAAATAACTGCTCACAAAGACGCCGAGATCTGGAAAAACTGTGCGGAGACTTCTGATGATCAAACTGCTGAAGAAGAACTTCCAAAGAGCCGTTTGACAGAATATGAATGACGTTTATTTTGTCTATTTGAGTCGAGATCCACGTTCTCTTTATTCTGTCCGATTGAGAGTCTTCAagaactttttttgttttccggattaacagtttaaaaaaacgccGATCtggataaaaaacaaaacggcaTTTGAGAAAGTTTGATTTGGACACCATCAGCGGCCGATCTGGACTTTCTTTCGGTTTATTTCAGGGTTGTTACACAGCGAAGATGGAATTGGATCTCTTTAAGTGTTGTATTTTACCTTATCGTGTGGTACAATATCATTTTAACCGCTGCCTGCTCAGCTTAGGTACTCGTCTATTAACTCCTCAAGTGTTTCCTGTCGTCGTTGGTCAACGATGATGCTGCTTTCAGTGTTCCCGCTGTGCACCGTGAAAAGTCTCAGAAGTCTGTTCTAGAAATGGATCGTTCTCTCGTCCTGAAAATGGCCCAGGACATGTTGGCTTCTTCTGTGAAAATCAAAGTTTCGggatcttttaaaaaaacaaagtactTGTTTGCCATCCCCCGTATTGGATTAGCTAAAAGGAGAGCATCATCATTTGGCCTGTGAGGGTGCTAAACGTCCAGAAGGTTCCTCACTCTAAACTTAAAAACAGCTTTCCCTTTTAAACTTGAtaacaaaactaactttctttcccatgtttttttcttttcttttttctacatacagcgttaaaggtgcagtaggtaagacatataaaactaactttctgtcatatttgctga

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007165 signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K04411 STK4, MST1; serine/threonine kinase 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59473 lncRNA upstream 34009 38331380 ~ 38332050 (+) True G44387
XR_005638933.1 lncRNA upstream 117739 38247303 ~ 38248320 (+) True LOC120557055
XR_005638935.1 lncRNA upstream 137709 38227579 ~ 38228350 (+) True LOC120557056
XR_005638934.1 lncRNA upstream 137709 38227582 ~ 38228350 (+) False LOC120557056
TU59403 lncRNA upstream 191952 38173602 ~ 38174107 (+) False LOC120557027
TU59488 lncRNA downstream 728 38410002 ~ 38412477 (+) True G44402
TU59489 lncRNA downstream 1351 38410625 ~ 38412477 (+) False G44402
TU59487 lncRNA downstream 3553 38412827 ~ 38413939 (+) True G44401
TU59504 lncRNA downstream 46648 38455922 ~ 38456336 (+) True G44417
TU59506 lncRNA downstream 47407 38456681 ~ 38457162 (+) True G44419
XM_039797053.1 mRNA upstream 18816 38346807 ~ 38347243 (+) True LOC120557037
XM_039797043.1 mRNA upstream 21808 38342443 ~ 38344251 (+) True LOC120557028
XM_039797054.1 mRNA upstream 40069 38325543 ~ 38325990 (+) True LOC120557038
XM_039797051.1 mRNA upstream 53572 38311854 ~ 38312487 (+) True LOC120557035
XM_039797044.1 mRNA upstream 57075 38306826 ~ 38308984 (+) True LOC120557029
XM_039798639.1 mRNA downstream 324893 38734167 ~ 38784058 (+) False rbpjl
XM_039798640.1 mRNA downstream 324917 38734191 ~ 38784058 (+) False rbpjl
XM_039798641.1 mRNA downstream 337357 38746631 ~ 38784058 (+) True rbpjl
XM_039798642.1 mRNA downstream 346859 38756133 ~ 38784058 (+) False rbpjl
XM_039798209.1 mRNA downstream 447893 38857167 ~ 38886428 (+) True LOC120557663
TU59402 other upstream 198841 38166182 ~ 38167218 (+) False LOC120557027
unassigned_transcript_220 other upstream 2403449 35962539 ~ 35962610 (+) True trnac-gca_18
TU58929 other upstream 2700018 35664143 ~ 35666041 (+) True G43924
unassigned_transcript_205 other upstream 2879824 35463772 ~ 35486235 (+) True LOC120556915
XR_005639074.1 other upstream 2925920 35439977 ~ 35440139 (+) True LOC120558245
TU59524 other downstream 203363 38612637 ~ 38612971 (+) True G44436
XR_005638991.1 other downstream 491298 38900572 ~ 38903056 (+) True LOC120557667
XR_005638992.1 other downstream 543844 38953118 ~ 38981733 (+) True LOC120557670
TU59701 other downstream 1404686 39813960 ~ 39821908 (+) False G44581
TU59760 other downstream 1746934 40156208 ~ 40163610 (+) False LOC120557666

Expression Profile