RNA id: XM_039798182.1


Basic Information

Item Value
RNA id XM_039798182.1
length 4502
RNA type mRNA
GC content 0.52
exon number 25
gene id itga7
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 21950376 ~ 21992611 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtctccctctgagCATAGAGGAGGGGGAGGCGCACATGCATTGAGAgaaactcacagacacacacacacacacacacacacacacacacacacacacacatacgagtGGCGGCCACATTTTCACAGCCTGCTCTTCAGACTGACAGCAGCAAACGGAGTTGAGAGGCATCACGAAGAGAAAGACGATTAGAAACAAGGGAGGCAtcaacagaggagaggagacaacaCAGGATTTTGCCCTCTTTTATCTCTCTGGGAGCCATAAAAGGATTCCACCCTGTACTCTTCTTGAACTGAACTTGCTCTGCTGCTAAGAGGACCAGCACCCTGCTATGGCAGCTCTGGTGGGACATGGGAACACTGTCTCCCTCTCATCTTGTTCCTCTCATCGTTGGACTACCCTCATCTGGGCTCTGTTGTTCCTTTTAGGCAAAGTGTGGGGTTTTAACCTGGATACTACTCACACACTGCATAAGTTGGGAGACCATGGCaccttttttggtttttctcTAGCACTTCACCAGCAGCTTACCCCAGAGCCTCAGAGCTGGATCCTGGTGGGGGCACCGCAGGCAGCGGGGCAGGGCCTGCTGAGAGGCAGCCGGCCAGGAGCCTTGTTCAGGTGTCCAATCACACCCGAGGAGTACGATTGTGAGAGGGTGGATATTGATGGAGAAGTGAGTCTGGACAGAGAGAGCAAAGACAACCAGTGGCTGGGAGTCACTGTCAAGAGTCAGGGGATTGGAGGGAAGGTGGTGACCTGTGCTCACCTGTATGAGCTCAGGCAACGTGTAGGTCAATCTTCAGAGACTCGTGACCCCATTGGACGCTGCTACGTCCTGAGTGAGGATCTGACAGAGCGAGATGACCTGGACGGAGGGGAGTGGAAGTTCTGTGAGGGCCGGCCGCAGGGACATGAGCAGTTTGGCTTCTGTCAGCAGGGAATGTCCGTCAGTTTCACCCCAGACaacaactttattttgtttggaGCTCCGGGAACTTACAACTGGAAAGGTGAAATGCGGGTCCAACTCCTAAACCAGACTCTGCTTGACCTTGGTTTCTATGACGACGGGCCCTACGAGGTGGCAGATCAGAAACAACTTAATGCCCAGCTCATCCCTGTGGCTTCCCACAGTTACTTGGGGTTTTCTGTGGACTCGGCCATGGACATAATGAGCCTCGGCGAGCTGACCTTTGTGGCGGGTGCACCTAGGGCCAATCACACAGGGGCAGTGGTGCTGCTGAGGAAGGACAATGTGTACCGGCTCGTGCCGCAGCACATCTTCTGGGGGGAGGAGCTGGCATCTTCATTTGGGTACTCGGTAGCTACGACGGATCTGAACAGGGACGGCTGGACCGATCTGATTGTTGGAGCTCCTAATTTCTTTGACCGTAAGGCAGAGATTGGTGGAGCTGTGTATGTGTACCTAAACCCCTTCGGTCACTGGGACGACCAGGCCCGACCCATCCGTCTCAATGGGACATACGACTCCATGTTTGGAATGACGGTCAGCAACGTAGGAGATCTGGACCAGGATGGATACGGAGATATTGCTGTGGGGGCACCGTTTGATGGAGATGGCAAAGTTTTCATCTACAGAGGCTCAGATGCTGGAATTGAAACCAAACCTGCTCAGGTGCTGGATGGTCGCAACTTTGATGTGAGACGTTTTGGATACTCCATCTCAGGCAGTTTGGATATTGATAATAACCACTACCCAGATATTGCAGTGGGCTCTCTTAATGACTCAGTGGTCCTCTTCAGGTCTCGTCCAGTCATCCATGTGATCAGAGAAATATCTATCGACCCTCAGTACATTGATCTGGAGCAGTACAACTGCAAGGGCAGAGAGGGAGTCTGCGTGGAGGTCAAGGCCTGCTTCACCTTCACAGCCCACCCAGAACACTACTCCCCACACATGACCTTGGTGGTGTACTTTGAAGCTGACACAGAGCGCAGGAAGCTGGGCCTCCCGCACCGCGTTAACTTCCTGGGCCGCAGTTCCCTGGAGCCGGAGTTTACTCAGACAGAAGAAGTGGAGCTGCATCGGCAGCGTCACCCTGTGTGCACCACTGCTACCTTCCAGCTCCATGAGAACATCATTGACAAACTGCGTCCCATCTCGTTGGCGATAACCCACACTATCAAGCCTGTGCCACCACGCAGACACTCAGGTGCCAAGAGGCTGGAGAAGCTGGCGCCTGTACTGAGTGTTTCCCCGTCTAACACGCTGCACTCTGAGGTGAACTTCCTGCGAGAAGGATGCGGCAGCGACAAAATCTGCCAGAGCAACCTGAAGCTGAACTCCCAGTTTGGAACACGACCCCTGACCTCCGACCTCTTCACCCCTCTGCCAAAAGATGAGGATGATGTGCAGGTGTTCTCCCTGTCAGACCAGCGGCTGGTGGTGCTGGAGATCACCGTCACCAACATGCCCTCTGACCCCCTGCACCCTGAGGAGGACGGAGACGACGCCCACGCTGCTCAGCTGCTAATCTCCCTTCCAAACACTCTGTCGTATGCCGGCTCCAGGATCCCACCACAGATGAGGTGCCAAGCGAACCAGAATGGCTCCCAAGTTGAATGTGACCTGGGAAACCCTGTGAAACGAGATGCTAAGctgaAATTCTCCATCAACTTGAGCACATCAAACATCACGATTGAGACCACTGAGTTGACAGCAGATCTATTACTGACAACTATCAGTGAGCAGCTTGATCTGGTGCCAGTCACAGCTTTTGCTAAAGTTGTGATAGagctccctctgtctgtcagtgGGCTTGCTACTCCGCACCAGCTGTTCTTCAGCGGGACAGTGAAGGGAGAGAGTGCCATGACCAGTCTGGAGGACATCGGCAGCCCCGTTGATATCGAGTTTGTGGTTGCTAATCCCGGCCAAACTCTGCAGACGCTCGGCTCGGCCTTCCTCAACATCATGTGGCCTTACGAGCTGGCCAATGAGAAATGGCTCTTGTATCCCGTCAGCTTGAAGTTTGAAGGTCACCCAAACACACAGTGCACCCCAACAGGGGCATTGAATCCTCTGAAGCTACACAGCTCCTCACTGGCAGAACTCCCACAGCCTGTCAGTCACAGTGCTGGGCGAACGCGCCGCTCCCACCCAGAGGAGGACGGTCAAGTGACGACAAAAGGCAGCATGGGACGAACCACCCCTGCTGTGGCAGCTTCAGAGAGACGCAAGTCGCTCAAACTGGATTGTCTCTTGGGGTCGGCACGCTGTGTCCTGATACAGTGTCCCCTCCACAGCTTCTCTGGTCAAGCTGTCCTGAAGATCCATGCCAGGCTGTGGAACAGCAGCTTCATAGAGgaGTTTTCAGCAGTCAGTGCTCTGGAGCTGCTGATCAGAGCCAACATAACTGTGAAGTCCAGTATCAAACATCTGGTCCTCAGGGATGCTGCTGCACAGGTTCCAGTGATGATCTATCCTGAGCCTGGTCTCGCTGACCAGTACTGGATCCCATGGTGGATCATCCTTATAGCCGTCCTGGCAGGCATCCTGCTACTGACTCTGTTGGTCTGCATACTGTGGAAGTGTGGCTTCTTCCAACGGGCCCACTACAAAGACAAATTGCCTCAGTACCACGCGGTGAAGATTCCTCGCGAGGACCGGCCACAGTTCCAGACTGAGAAGTCAGGAGTTGTCCATAAAAAGGAATGGGCCACGCACTGGATTGACGGGACCTCGTAACTCCCTTCGAAGCACTGACtgacaaaattaattaaaatcacAATGTGTGGCACTCATTTGTCTTTGCATTGGAACTAACGGACTAAAAAAAGTGCACACAGACTGAGATCATGACATCTTTTGCACTCCACTTTGTCAGTACTTGCATATTGGTGGCCTGTTACACTGTGACTGGATCTATACTCTCCCATGCTGTAGCCCGCTGATGGCCGCCCTTGCAGTCTATTTATACTGTGCAGCTATATCAGTGTGTTACAGTACATACTGAAGGCCAACAACAATATTAGAACCAGTCTAGCTGCTCATATGCTTTATAGCCTGCCGCCATGCACTTCACTGTCTGTCATCaggacaggagaaaaaaaatcatgactCAAAGACATGCATGAAtgcacaaacatacagtacagtataatcTTAGATGCATAGACACATTGGACATTGTTGATGAAGAAGCCAATGCCTGTGACAAAGACTTTTTTgccttaaagctccattgtgtaatgttttgagttgattcttagcaaaaaaccctttgttctttcacaaatatgtgctcattcatgtgtaattacttccaccaactaatcaaagtattctcgtaagcgtagaatctgacattcagaatcattcagaatacatgaGCGAGTCGCTCATATGTATTTTGCCATGTtgtgcctccatctttaaaatacattagccaaagagggacataccgctgtgcttttacactcagtggcaccgtgacgaatgccagggggagattactcgatctgccggcagatttg

Function

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0016203 muscle attachment biological_process
GO:0007160 cell-matrix adhesion biological_process
GO:0008305 integrin complex cellular_component

KEGG:

id description
K06583 ITGA7; integrin alpha 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54960 lncRNA upstream 17144 21911874 ~ 21933232 (+) True G40840
TU54965 lncRNA upstream 32565 21917243 ~ 21917811 (+) True G40842
TU54900 lncRNA upstream 172780 21713797 ~ 21777596 (+) True G40804
TU54919 lncRNA upstream 174959 21760799 ~ 21775417 (+) False G40819
TU54916 lncRNA upstream 174959 21771445 ~ 21775417 (+) True G40819
TU55035 lncRNA downstream 209515 22202126 ~ 22202736 (+) True G40904
TU55057 lncRNA downstream 281463 22274074 ~ 22274301 (+) True G40923
XR_005638962.1 lncRNA downstream 302343 22294954 ~ 22297812 (+) True LOC120557379
TU55086 lncRNA downstream 396567 22389178 ~ 22425121 (+) True G40948
TU55200 lncRNA downstream 562006 22554617 ~ 22554845 (+) True G41021
XM_039797627.1 mRNA upstream 10602 21926042 ~ 21939774 (+) True LOC120557365
XM_039799033.1 mRNA upstream 62197 21887158 ~ 21888179 (+) True b9d2
XM_039796865.1 mRNA upstream 606668 21295102 ~ 21343708 (+) False vgll4b
XM_039796864.1 mRNA upstream 606668 21319249 ~ 21343708 (+) False vgll4b
XM_039796866.1 mRNA upstream 606668 21324643 ~ 21343708 (+) True vgll4b
XM_039798384.1 mRNA downstream 4740 21997351 ~ 22000471 (+) True npffl
XM_039798884.1 mRNA downstream 13929 22006540 ~ 22043893 (+) True LOC120558047
XM_039797741.1 mRNA downstream 151760 22144371 ~ 22192386 (+) True col2a1b
XM_039797742.1 mRNA downstream 151760 22144371 ~ 22192386 (+) False col2a1b
XM_039797631.1 mRNA downstream 228687 22221298 ~ 22252681 (+) False LOC120557368
TU54259 other upstream 1801686 20148104 ~ 20148690 (+) True G40353
XR_005638939.1 other upstream 2026827 19917889 ~ 19923549 (+) False abhd14b
TU54184 other upstream 2091035 19851548 ~ 19859341 (+) True cenps
XR_005638959.1 other upstream 2318364 19617181 ~ 19632012 (+) False LOC120557344
TU55524 other downstream 1756299 23748910 ~ 23760951 (+) False cbfa2t2
TU55525 other downstream 1765147 23757758 ~ 23760951 (+) False cbfa2t2
TU56251 other downstream 4275991 26268602 ~ 26273315 (+) True G41825
TU56292 other downstream 4549896 26542507 ~ 26548799 (+) False G41850
TU56293 other downstream 4549896 26542507 ~ 26548799 (+) False G41850

Expression Profile