RNA id: XM_039798187.1


Basic Information

Item Value
RNA id XM_039798187.1
length 5903
RNA type mRNA
GC content 0.51
exon number 18
gene id lrig1
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 9360191 ~ 9398603 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACGATCAcccagaaaaaaaaggaaaagtaacGCAAGAAAGGAAAAACTCATGGTGGCGGTACACAGTCGGAAGGAGGGGGGACATTATTTTACTATTAATTGGATCGTCGAGATTTTGTGACCACAGACTGCACCTGATAAGCTGTCGGTTGAGTTCTTCTGGAACGGACTGTGTGTATTTAAAAGTTGGATTTATTCGACTAACGTGAACGTTACAGCGGCGAAGTGCTGGTGAGATTTGGACGGTATGCAGCGCTCGGCTGGAGAGACCAACGCTGGCTGGAGTGTCCGGCAGTATTGCCGCGGGTCTTAACTTATTTGCTACATCTTCAAGTGTGTAGTGGAAATTTTACAGCACCGTCAGAAGTCAACGTGCAACGGACGGTTTTGCTAAGTTCAAACATTTCGGCAGCTGCTCCGTTGATTAAAAATCTGAGAGCGATCCCAGGCGCACTGTGTCCTTTAACATTTTGCTGTTGCATGTTTTCAAACATGTCACCAAAACAGCTATCCTATCGAGAAAGTAGTTGTTTTAGCCCTTTATGAACATACTATTTCAACTTGAATTTCAGTTCAGGGCGATATACAAGTTCGCTGTAACATCCTTTTGCTGCTTTATCTGTGAATCACCTTTGATTTTTAGCCCGCGTCGGACACCAGCGGAGAAAGTTGGACTGGGAACTTGTGTCCTACATGACTGGGACTGAGATGGGCAACGTTTTACTGCACCACGGTTGTTTATGCTAGCCTCTGTAGTACAAGAAGACAATTCATGTGCTATAAAAGGCATTCAGTCTCTCCGAAGCTACATTAATATTCCAGTTTGTGGGTACGAGAGAGCTCAGCGGCCGCGCTATTAATACTGGATACAAAATGGCGGCGTCCCTGGGACGTTTTGGATATCtttcttcttgtgttttttatttaattttgtcgGTCGAACTATTCATCAGTTACGGAGTGAGTTCAGACTTGCCGTGTGCCCAGAACTGTACCTGCAGCGGAGATTCAGTGGACTGTAGTAACCTGGAGCTGACAGCTACGCCTCTGGACCTTCCAGTCCGGACTGTTTCCTTgaATCTTGGCCACAACAAGTTGACCGACATCAATGTTGAAGCTTTTGAGAACCTTCCCAACTTGAAAGAGCTGCGCCTGGACCACAATCAGCTGACCTCCATACCAGATTTAGGACAGGCTGCTTCCAAGATTGTATCTCTCTACCTACATCATAATAAGCTCCACAGTATAGACGGCAGGCGGACCAGAGAGCTGGCTTCTGTGGAAACCCTGGACCTGAGCAATAATGGCATCACTGAGCTCCGAGGGCAATGCTTTCCCGCAGGCCTCCAAATCAGAGACCTCTACCTGAGCAACAACAAGATCAGCGTGTTGGAGCTCGGAGCTCTGGACCATCTGGGCTCGACTCTACAGGTCCTGAGACTGAGCCGAAACCGCATCAGCCAGATCCCTGTGAGAGCCTTCCAGCTCCCGAGGCTCACCCAGCTTGAGTTGAACAGGAACCGTATTCGTCAGGTGGAGGGTCTGACCTTCCAGGGTCTGTCCAGCCTGGAGGTACTCAAGCTTCAAAGAAACAGCATCAACAAACTGACTGACGGGGCCTTCTGGGATCTGGCCAAGATGAAAGTcctTCACCTGGACTACAACAGCCTGACAGAGGTAAACAGTGGCTCCCTGTACGGCCTGACATCCCTTCAGCAGTTATTCCTCAGTAACAACTCTATAGCCCGCATCAACCCCGATGGATGGAAGTTCTGCCAGAAGCTGAGGGAACTGAATCTGTCGTACAACAACTTGACTCGTCTGGATGAAGGCAGTCTGGCTGTGCTAGGGGATCTCCACACCCTCCGTCTGGGCCACAACTCCATCAGCCACATCACCGAGGGAGCCTTCAGAGGCCTCAAGGCCGTACGCATCCTGGAGCTGGACCATAATGACATCTCTGGCACAATAGAGGACACCAACGGGGCCTTCTCTGGATTGGACAGCCTCAACAAGCTGACTCTGTTTGGAAACAAGATCAAATCGGTGGCCAAGAAAGCCTTCTCTGGCCTAGAGAACCTGGAACACCTGAACTTGGGAGAGAATTCTGTTCGTTCCATCCAGCCCGATGCTTTCAGTAAAATGAAGAACCTCAAAACCCTTTTGATTCAGAGCGACAGCTTCCTGTGCGACTGCCAGCTTCACTGGCTGCCTGACTGGTTGGTGACACGTGGTCTGCAGGCTGGTGTCAATGCCACCTGTGCCCACCCGGAGAGCCTTAAGGGCACCACCATCTTCCAGGCTCCGTCCAACAGCTTTGTGTGTGACGACCTTCCAAAGCCCCAAATCACCGTGCAGCCAGAAACGTTGGTGACGGTCCTTGGTAGCGACGTGCGTCTCACCTGCACGGCGGCGAGCAGCAGCACCTCCCCGATGACCTTTGCGTGGCGTAAGGACCAGGAGCTGCTTCGCCAGGCCGAGACAGAGAACTACGCCCACGTGCACGCTCACCACCAAGGCGCGACATCTGATGTGCCAGGTGCAGGTGGAGGTGTGATGGAGTACACCACTATCCTGCACCTGCGGCGTGTCACGTTCGCCCACGAGGGCCGTTACCAGTGCATCATCACCAACCACTTTGGCTCCACCTACTCCAGCAAGGCCCGTCTCATTGTCAACGTTCTCCCATCCTTCGTGAAGACTCCCAGGGACAGCACCATCAGGACGGGCCACACGGCGAGGCTGGAGTGCGCCGCAGAGGGCCACCCGACACCGCAGATCGCCTGGCAGAAGGACGGCGGCACGGATTTCCCCGCTGCCCGAGAGCGCCGAATGCACGTCATGCCCGACGACGACGTGTTCTTCATCATGGACGTCAAGCCGGAGGACATGGGCGTGTACAGCTGCACTGCCAAAAACACAGCGGGCACCGCCTCTGCCAACGCCACCCTCACCGTGCTGGAAACGCCCCACCTGGCCCAGGACCTGGAGGACCGCAGCGTGGCGGTCGGCGACACGGTGGCGCTGCAGTGCAAGGCCCTGGGCAGCCCGCCGCCGCGCATCACCTGGCTGCGCGACGACCAGCCGCTGCGCCCCTCCGACAGACACCACTTCACCCCGGGGAACCAGCTGCTGGTCATTGGCTCGGCGTCGTTGGAGGACGCCGGCCGCTACACCTGCCTCATGTCCAATGCCCTGGGCACGGAGCGCGCTCACAGCCAGGTGGTGGTGACTCAGCGCCGCGGCCCCTGCACGCCTTCGGCGGGGCCGAGCACGGTCACGATCGGGATCATAGTCATCGCCGTGGTGACGAGCATCGTGGTGACGTCGCTGGTGTGGGTCTGCATCATCTACCAGACCAGGAAGAAGAGCGAGGAGTGCAGTGTCACCAACACAGATGAGACGATAGTTCCTCCAGACGTACCCAGCTACCTGTCCTCCCAGGGCACGCTGTCCGAGCGGCAGGATGTGTGTATCCGCGTGGAGGCCGGCGGCGGCCCTCAGCCCAACGGACACATCGTAGACACCACAGGTTTCAACGGCGCAGTAGTGTGTACAGACTGCATGGAGAACGGCAGCAGCTACTCCAAAGATTCCGACTACCTGACGCACGGGTTTGGCCACGCTGGATGCATGGAGTACCAGCAGCACTCTGTTCCCCCACCTTACTCTCACCGTCATCCAGGGGAGCTGCATGACGCAGGGCCACGCTCAGCCCCGTTCTGCAACGGGACGCCCAACGGGATCCGGAAGGACATTCAAGGATCCGTGTTTCCAAAAAACCACGATACATTACAGCTGGACCAACATGATCGAAAAGCGAGCAGAGGCGGACAAACGCCGGCGTGCTCCCCATCACAGGAGGACTCCTTCCACAAGCCGGTGAAGCTGGCCGGCGTGACGGGCAACAGCCGTCTCGAAAGTGACTGTGAGACTGAGCTCAGGCAGACTCTGCTGTCCAATGGACACACCCTCAGAGCCTCTCAGAATGAGAGCGCCCCCCTAAGGAGAGCCAGCGACTAGCAGGCGCTTCATCCAGCCCAAAAGTGGACTCGCGGTTGCTGagtggacttttatttttttttgcactggGAAATAAACTGCTACCTCATATCGAGGCGATTGATCCTGAGCCTCCTGGATCTGGACTGAAAGGGAGCACCGGGACGTGAAAAAAGGCAGGGGGCATCCGGAGTTTGAAGGTGGAGCTTGTGTGGGTGGCGTCCCATCTGAGCGTATCAGCTGTATATAGTTTAAAACCTTCCTTTGGGAGGTGACCAATACAAATTCTAGCTCCAAAAAATGTGACTTGCATTTGAAGCATGTAAATGTAGGGAATCttgtacagtacatgtatgtgcagggagaaaaaaaagaaatatacctTTGGACATTTGACTGTACATAAGAGTTttcttatattatatattatataacttTTACAAAAGAGTATTTGAATTTATGTGCATGACAAAGAAAGGAGtgatggtattttttttttattaaaaaaaaacagcctttttcagcTTTTACCAACGTTCAGCTGCGGTGCCTTAATGCATGATCAAAGAAAACTCAGCATATATCAAGCAACTTTTTGTGAGAGATACTGGTACACTCTTTatagcaaacaaaacaaacacttgaTTGCACTTGAATGTTTTTTGACAAATGCTGCCAACCATGGCCTTACAGACACACCGTTCACATTCATTGTTATTGTATGAAGGAAGAGCTTTTGATGTAAATTATTTTGGTACGTCGGATGGTTCAAGCTGGGATATTTGTGGGCGGTCAGTTAAAGCACTTTTTGTATTTACGTCATAAACAAGCAGATTGTGTACATGGTATCTGCCAATAGGAATGCAGGAACCTCCTCTATGTGAGGAGACATTCCACTTATTTTGACACGGTAAAGTCGACAGTACATACTGTACCAGTAaggctcctccacctgtttcaCAATACTACAAGTTACTGCAAAGCTGCTCTGATGTATTTGGGGGTGAAAAATATTCTCCTCTGATTCGGATTAGTTTCTTTATTTATCCAAGAAACTTTGGCGCACACACGTTCACAAACAAATGTGGTCAAACTTAGGAGAACAGCTGTTTTATAAGCTGTAAAAACTCAGCAATGATCTCTGTTATGGACACCTACCATGTGTTCTCGGTCACAGCTATGTGCGCTCGAGCACTGACATTTAATTGGCTGAATGCTTAAATATACCACTCTTATGCTATGAATTTAGGGAAAGATGGAGAATCACGGAGAATGTTTTATTGTGCTACTGCTGTAATGCGCCTCAACATCCACCGTGAAACGGCCAGTATTCTGCCTTGGTCACATCAACACAGTGTAACAATAACTTTCTCATCATCACTACAGTTGAGTACCGTTTTGAGGTGACTAAAGGTTCATGCTGTGAACAGTCAGGAGGCTTGTGAAATGTGCTCTAACCAAACTTGGAGGATTAATGCAGTCAGACGCTCCCCGGACTGTCCCAATCCCTGGATACACTGGGTCAGAATTCAGTCAAAGTAGTTACGTTGCCTAATGTATGCATGCGTTTCGCCAGTAAGCCCTTGTCTGAACTGTGTTCTGTTACCAGTGGCCTTATTGAGGTAAACTGGAGGACACACTCCTCTGGTTACACCTGATAGCACCTATCCGAGATGATATTACCAGAAAGACCAATCAAAGATCACTGCTGGAAAACTAATCCCAGTGTAGCAGGTGAAGTGgacaagagggagagagatgcaGTTCATGTATGGAGTAATTTATTGAAACAAACCGTTCGAAACCGTTGTACCAATGTCAAAGCTAAAACCGCAAAGTGTCTAACATGGCATTGAAgtgtctaataaaaaaaaaagaaatattcacattttgcTATTAC

Function

GO: NA

KEGG:

id description
K24610 LRIG1_3; leucine-rich repeats and immunoglobulin-like domains protein 1/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49578 lncRNA upstream 129237 9230464 ~ 9230954 (+) True G36990
TU49579 lncRNA upstream 129268 9230464 ~ 9230923 (+) False G36990
TU49580 lncRNA upstream 129828 9230080 ~ 9230363 (+) True G36991
TU49576 lncRNA upstream 320422 9039463 ~ 9039769 (+) True G36988
XR_005639054.1 lncRNA upstream 420153 8885773 ~ 8940038 (+) True LOC120558080
TU49621 lncRNA downstream 1731 9400334 ~ 9410661 (+) True G37023
TU49718 lncRNA downstream 333254 9731857 ~ 9733351 (+) True G37064
TU49739 lncRNA downstream 362444 9761047 ~ 9772228 (+) False prickle2b
TU49772 lncRNA downstream 529432 9928035 ~ 10006856 (+) True G37104
TU49780 lncRNA downstream 559232 9957835 ~ 9962577 (+) True G37112
XM_039797739.1 mRNA upstream 130210 9104336 ~ 9229981 (+) True suclg2
XM_039797740.1 mRNA upstream 130210 9104808 ~ 9229981 (+) False suclg2
XM_039798377.1 mRNA upstream 488025 8832264 ~ 8872166 (+) True tafa4b
XM_039798967.1 mRNA upstream 532812 8810821 ~ 8827379 (+) True eogt
XM_039798968.1 mRNA upstream 533645 8810821 ~ 8826546 (+) False eogt
XM_039797029.1 mRNA downstream 96681 9495284 ~ 9650337 (+) True magi1b
XM_039797033.1 mRNA downstream 96681 9495284 ~ 9650337 (+) False magi1b
XM_039797030.1 mRNA downstream 96681 9495284 ~ 9650337 (+) False magi1b
XM_039797034.1 mRNA downstream 96681 9495284 ~ 9650337 (+) False magi1b
XM_039797032.1 mRNA downstream 96681 9495284 ~ 9650337 (+) False magi1b
unassigned_transcript_198 other upstream 537460 8822660 ~ 8822731 (+) True trnae-cuc_13
unassigned_transcript_197 other upstream 537883 8822237 ~ 8822308 (+) True trnae-cuc_12
unassigned_transcript_195 other upstream 543794 8816325 ~ 8816397 (+) True trnar-acg_14
unassigned_transcript_192 other upstream 552503 8807616 ~ 8807688 (+) True trnar-acg_13
unassigned_transcript_191 other upstream 618414 8741706 ~ 8741777 (+) True trnae-cuc_8
TU49895 other downstream 906584 10305187 ~ 10309996 (+) True G37197
TU50184 other downstream 1598627 10997230 ~ 10998137 (+) False G37397
TU50347 other downstream 1953475 11352078 ~ 11352387 (+) True G37525
TU50377 other downstream 1992136 11390739 ~ 11394334 (+) False LOC120557336
TU50430 other downstream 2381575 11780178 ~ 11805394 (+) True G37597

Expression Profile