RNA id: XM_039798188.1


Basic Information

Item Value
RNA id XM_039798188.1
length 6005
RNA type mRNA
GC content 0.39
exon number 9
gene id LOC120557651
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 26129594 ~ 26170085 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGCTCTGATGCTTGCGCTGATTTCAGTGTGTGAGAACAATGTTAATCTGTGTgagtgtttcctctcctctctgcctgATCTGAGTGCACGTCACCAGCACCTTGAGCCAAGAAAAGTCTTGTTTGAGAGTGTCTGCTTCTTGGACAGAAACACCCCCCCAGGAGAAACTGGGACCTTCCAGCTCTGGGGTTTTGGGATGTCTTTTGAGAGTAGGATAAACCAGAGTGCAGattgttaatattttttttcttcttcctgcaTATCTGACCCTGTTCTCTGCTTCCACTCTTTGGGAGGCAGCACATCTCTCTTCCAGGGACGCTGCGCCTAGTCTTTGACAATGAAGTTCAACTTGTTCAGGCCACAGGCCGTGGCGGCCGCTGAGCCCACCGGTGTCACCACCGTAACCATGGCTCCCACTCCGGCTGTCATCTCCACCTCGGTGCCGGACACCTCTGGCTCCAACAACACAGAGATCAGCAAGAACGACATGTTTGAGGAGATCAAGAGCAAATTCTTGAATGAAATTGATAAAATCCCGTTGCCGCCTTGGGCTTTGATCGCCATCGCTGTGGTGGCCGCGTTGCTCATCCTCACCTGCTGCTTCTGCATAATCAAAAAATGCTGctgcaagaagaagaagaacaagaaaggGAAGAAGGGCAAGGATGGCTTCAACATGAAGAACATGCAGGGCGAGATACACCAGGACGATGAGGATGATGACGAGGGAGAGACCGGACTgacggaggaggagaaagaggaagaggagaaagaagaagagaaactgGGGAAGCTGCAATATTCTATAGATTATGACTTTGAAAATGCAAAGCTCACAGTTGGCATCCTTCAAGCTGCGGATCTCATATCCATGGACTCAGGTGGAACCTCCGATCCTTACGTGAAAGTCCAGCTTCTGcctgagaagaagaagaagtatgACACCAAAGTCCACAAGAAAACGCTGAACCCTGTCTTCAATGAGACATTTGTATTCAAGGTGCCCTACGAGGAGCTCGGTGGGAAGACTCTGTCGATGTCTGTTTATGACTACGATCGATTTTCCAAACATGACGTCATTGGAGAGGTGAAGATTCCCATGAACACCATCGACCTCGGAAGGCCGATTGAGGAGTGGAAGGATCTGGAAAGCGCAGATCAAGAAGAGCCTGAGAAACTCGGAGACATCTGCATCTCCCTCCGTTACGTCCCCACCGCCGGGAAACTCACCGTCTGCATCCTGGAGGCAAAGAACCTGAAGAAGATGGACGCCTGTGGATTATCTGATCCATATGTGAAGATCCAGCTGCTGCAGGGGGGTAAGCGtctgaagaaaaagaagactACAGTGAAGAAGAACACCCTCAACCCATACTATAATGAATCCTTCAGCTTTGAAATCCCCCTGGAACAGATGCAGAAAATCTTGGTGGCGGTCACAGTGTTTGATTATGACAAGATCGGTAAGAATGACGCCATCGGAAAGATCTTCGTGGGCAGTAAGGCGAGTGGCCTAGGTCTGAAGCACTGGTCCGACATGCTGGCTAATCCCCGCCGCCCCATTGCCCAGTGGCATCCATTGCAGCCAGAGGAGGATATCGATGGTCAGCTAGCATCACTGAACGCAAAGAAGTAACGTGCTCCCCAACCAGCTAATGTACTAACTCAGAGTTCCAACCCCCACCCCTACTTTGCATGAAACCCATGACTTAACACGTGACGATTCGTCATGAAACCTGCTCAGCAAAAAAGAGACATCTTAGAATATCCGCTCATTCATGGTTAAGTCgaaaaaaactctttttaaGCATCACATTTCACACATTAGTGTATGCTGGGAAGAGTGGCGTTGAGTTATCGGGTGACTGGTTCATGAACGATCGACTGTTGGTCCTTCTTTCATTTGAAGAAAATTAGAAACTGATTCTTAGGGTGCTGACACTGAACGAAAGTCTTGGTGAAGACAATGCTGGAAATAAagctttagtttagtttatagaGCATGCTTTACTTACCTCCCCACTGCTCTGCATACACCACGCCCAGTATTGTATCTTGCTAATAAGTGTGCTTTAACTTGCAATAGAAAGTATTGTAGTATTGGGTTATTTCCTGCATAGAGTCTGTTTTAGTCtattaatgcaaaaatatttaattgagAATGAATGAGGTCAAGATCACTGAATGCAGAGATCCATGTTGCAATATATTTTTAAGATAAATCTGCATGAATGATTGTCTTCATTTTATCAGCTCACATTTGAGAGGGATATAcaaacagtagcctacataacaCAGTACGCAGCAGCTGTCTGATCTGAGTTGCTTGTTTTGTGTTGCCATGAAGGCGCGTCTATGCATTTAGGTCCAACACACATCTCTGTGTCTTCAGACAGATCTAATGTAGGACAGGAATACAAGGGTGCCTTTCCTGATATGACACTTTGAGGAATAAAGTTAGCTTCATTCTTTTATTCAAATAGGAAACTTTTGAAAATCATTCAGATGTAGTCTGGGACACTGTGAATGTGCCATCTGGAATCTGTCTTGAGCTGGGTTGACCACTTGGATGTAAAACTTTACTTATCAGATGACAAAGTAAGGATATGAAAAGGCTTATCAATGATGTTCAGAACAATTATGACTACGCTTCTTTTAGATTCTGCTCTTGCTTGCGATAAACAGTGCCATCTAACTCATTTTTCTGTTGATATCCACTAAACGGTCTTTCTTTGACGGATGTTGTAGCTTACCAAACATACTGCAGTACACTTCAATACACCAATAGTTTTTGGTGGAGCAACATGAGGATTTCTGTCAAGGACAAGATGTTTTTATAAAGAACTGAAATTTGAAATGTAGAAGATGTAGCCGCACTTTTTAAGAGAGTGTGATTTCAAGAACAAAATGCAAGATTATAGAATCTCAACAGGGCAGTTGTTACATCAaaacatataacacaataaacataTGTTGGACCATTTTGCTGCAGAATCTAGCATGTATCATGCCTCGCAgtatttcatgttgtttagatTGCCCACTCAACGGCCAAAAGCTTTGTAAACCTTGGGCCAAAGTGCTACAACATAATGGTGTTACAACTTCATCCAGACATACGGTGTTAGACTGATGTGCAGAGGTACGGAGGCAAAAAAGCCCATAAGGATTTGAATCTTATTTGCAACTAATCGTAAAGTTTCATTACTACTAAATACCtaatgttgacattttaataCTATATAATTTATAGCATTGAAATATTTAACTTGGAATTCATGTGGTTTGAATTCCCCACCTTGAAATCTCAAAgactaaattattttaaatgaattcaCATTAAAAACTATAAACAAGATGCTCAAATTCAATTGGTCATTTTTGGATCTGAAAAGAGTTGAGTTTATTTAGACACCAAAATTCTGGAAGAAAACTTAAATCTTGAAAATTTTGGCTACCAAAGCAAAACTGATCGAGaaaaattatgatttgataaaaagaaaaaatccccATATTAGCTTCTAGGAGTAAAATATAGACACATATAGTTATTTATGCATTGTCACAATAACCAATAGTTAGAAAACTATATTGTAACAATATCTATATTTCTATAATTAATACTGTAAAATAACATGTTGTTATGCTGTTTCATATAATCGACTAAAGACAAGCTCAGATGAGATATGGGACATTTAGCACACTTACATTGTCAATCAGAATTTGtgaaatttaaaagaaaaaaaaacggtttgCAAAATGAAGTCAAAGAGGGGGAATTCAAACTTTTTGAAATCAGAAAgttggttttcaaaataaacattgAAATTCCGTAATTTCAGTGGTATTTGAATTTCAAAATTAAGTATTCAGTATCCAAAGGTTCAAATTATTACTGCCTTTCTGTGCTTTCATAGAAGGCCATATTGTCACCAGAAGTAAAAAGAATTCTGCTGGAGGCTAAACAGCAGCACACTGATTGCTCCATGCACAGTACTACGTCCTCCTATTGTTAACATTATGCATTGCGCAAATTTGTTAATAAGCTACAGCATGTATTCACAAGATGATGTAAATAGTAGCATGTTTTAAAGAGGAACCATAattatattgtgtatgtgtgtttgtgttctgtgtCATTTTTGATAATAAAATGGAGTAAAAAAAGAGTATGCACTGACTGCAAAgtgtatgtatttttgttgaatggGACCGAAGGTATGTCTGAATATTCCATGTGTATGATTAAAGCAGGGTTGCTTTGTGTatcatatgtaaaaaaaaaaaatccacatttGCCATAATGCTGCATGGTtgtctggttttctgtcatCGTTTGTATGTGTCCTCTAAACCAAAACTAAACTCAATCCAGTGTTACGATATGCTTGGGCTACAAGTCATGTAATTATTGTTCATTTCTGCTTGCTCatgttatacagtatgtgttggtCACTGACCGGTAAActgtacatatttaaaaaaatatatatatatatttgccgGCTCCGTGATTTTCTATCTCAGTGTACCGTAAGTGTTGCCTTCATTTACTCCTGCCAGATGTAGTTACAGTGGGCGACTTAATCATTTTCCTTCATTAAATTGTACCTTCTCATCTTATTGCTATTCAAATAAACCTGCTCCCATATGTCTGATTATACTTTTTAACATAAGAAATAATTCAGTAACTTGcatataaactaaactaaacttttaatgtcattatacagtatttttttattactatttctTTGCCAGATTAGTTCTGTGACATATTATTACTGCATATTATTGATGCAGTCCTCTTGAGGAGCTCCAGTCATGTAATTAAGCAATCAATAATATTTTCATTCCAAATGTCTCTTCATGAGTTTGACTAATGGACTGCAATGGGATGAGCTGGTATTTTGTCACTTGTGCATGCTCTGAGATATCGATGCTGTGTCCACTATGATATTTCTAATGTGGGGATTTGTTAACTCTGTGTGCTTATTTTtttgagtcactgtcatttacTGTCAGATAAACCTTTATTTACAACCTACAGTTCATGAAGATGAACAATCTTTATGACAGTCCATCTTTTCGAGTATAATGCAGCTATCTCTCTATGTACGACGGGCTGAGAGGAATACATACCagacacatttttcattttcaatgtcAAATCTATTCTGAAGATTAAATTCCACAATGGTGTCAAATTTAAGTTCAGATCATGGAGGGCCGCCAATTTACATCCTTTTCTACAATGTGTGTCAGGTCATCCTTTCCTGGGGGTCATTTAATATACTCGTGCTCATCTAcgtatgtatatacatacatacatacatacatacatatatatatatatatatatatatataaatgtgctCCCATCAGATTCTGTCTCCTGTTCTTTGTGTATTTGCAATAGGACCAATAGAGCCTGTATTTGTTTTATGGTGTtgtgtaaatggactgtatgaGTCTTTCACGTTTCTGCAATGCAGGCAACAAAATCCCCGTCTTCCTGGGTCTCACAAGCTATCTTGAGCACAGAGCAGACCCAAACAGTGCAGAACAACATTCGCAATGCAATACTGCCAACCTGCTGCTTCAATAATGGTTCCTCTTTAGTCCTCTTATGTGAACATAGCCATAATACAGAACATCCAAAGGCCTGATCCTCATCCGACCTACTCCATCAGGCATTCACTTTCCGAGCGACATAGACGAGGGAAATGCTCAAACAGCTTTCTTGActcttgtttttgtcttgttgTAGAGGTGTGTCAATAGTTGTGCCTTTTTGTGAACTGCATGATTTATTTCCGTACAAAATCCATGTTTtccagcaaaaaataaaaagggaacaaAAAGACCACAAAACTTGTACTCATATATCACTCTATGTAGAACTGAAATACTCAAGGGAACCAAAATATGGGATGTGGTCAGGACATATTTGTGTGTTGTCTAAATGTAATCTTAGGAAAATAAAGGCATTTTAAGTAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56162 lncRNA upstream 102384 26026555 ~ 26027210 (+) True G41754
TU56139 lncRNA upstream 126843 26001481 ~ 26002751 (+) True G41746
XR_005638956.1 lncRNA upstream 206531 25921754 ~ 25923063 (+) True LOC120557323
TU56061 lncRNA upstream 221961 25906302 ~ 25907633 (+) False LOC120558088
TU56058 lncRNA upstream 241861 25885222 ~ 25887733 (+) True G41694
XR_005638967.1 lncRNA downstream 51992 26222077 ~ 26252094 (+) True LOC120557409
TU56254 lncRNA downstream 105037 26275122 ~ 26275929 (+) True G41827
TU56271 lncRNA downstream 154720 26324805 ~ 26338204 (+) True G41834
TU56272 lncRNA downstream 174052 26344137 ~ 26345459 (+) True G41835
XR_005639038.1 lncRNA downstream 230368 26400453 ~ 26404224 (+) False LOC120557964
XM_039799138.1 mRNA upstream 4856 26114854 ~ 26124738 (+) True mybphb
XM_039799139.1 mRNA upstream 4856 26114854 ~ 26124738 (+) False mybphb
XM_039798778.1 mRNA upstream 15421 26035728 ~ 26114173 (+) False nav1b
XM_039798417.1 mRNA downstream 361428 26531513 ~ 26540962 (+) True nudt3b
XM_039797964.1 mRNA downstream 380732 26550817 ~ 26585593 (+) True pacsin1b
XM_039797967.1 mRNA downstream 391697 26561782 ~ 26581811 (+) False pacsin1b
XM_039797968.1 mRNA downstream 391768 26561853 ~ 26581811 (+) False pacsin1b
XM_039797966.1 mRNA downstream 397473 26567558 ~ 26581811 (+) False pacsin1b
TU55524 other upstream 2368643 23748910 ~ 23760951 (+) False cbfa2t2
TU55525 other upstream 2368643 23757758 ~ 23760951 (+) False cbfa2t2
XR_005638988.1 other upstream 4137795 21950376 ~ 21991799 (+) False itga7
TU54259 other upstream 5980904 20148104 ~ 20148690 (+) True G40353
XR_005638939.1 other upstream 6206045 19917889 ~ 19923549 (+) False abhd14b
TU56251 other downstream 98517 26268602 ~ 26273315 (+) True G41825
TU56292 other downstream 372422 26542507 ~ 26548799 (+) False G41850
TU56293 other downstream 372422 26542507 ~ 26548799 (+) False G41850
XR_005639013.1 other downstream 483175 26653260 ~ 26698571 (+) False anks1ab
TU57106 other downstream 3070328 29240413 ~ 29242253 (+) True G42449

Expression Profile