RNA id: XM_039798207.1


Basic Information

Item Value
RNA id XM_039798207.1
length 6983
RNA type mRNA
GC content 0.46
exon number 23
gene id cntn3b
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 5610010 ~ 5665053 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACAAAGAGAGCAGAGCCCGGGGATGCGCACAATGTGAGTCTCCGCTCAGAGGCACCGCTTGTGGAGTGTAAAACGACGAGGTCGAGGAGCATCCCGGCGCAGTATCATCCTCAACAAGACAAAAACTCACTTATTGTGGAATTTACCGAGGTAGGGGCGACTGTTCAGTCCCGTCCTCGAGCACCGAGAGACGCACTTAATAGACGGAGCAGAAATTAAGAGCAGAGCGCAAACACTGCTGGAGCAGAGAGCAGCAATCTCTTCTTTGGCTTCTGAGAGAGACAAGAGTTTCTGTGAGAAATGTAAGCCGCTCATCAGAGCCACAGATAACACATCTAAGGGACGCTGGAATTACAATCAAAGCAGTTTAATGAAGAGGAAAACAATGCATCCTATATCAAATTAAAATTATTGCATTCAAGGGAGAGCATTCCATTCATACGCAATTGGATGAGAGTCTTAATAGCCCTCAGCAACTAAAGATGatgttaccatggaaacaaaTTGTTCTGCTATCAATCACTGGATGCCTTGCAGCCTGTACAGAGGATGTCATATTTCAAGGGCCAAGATGGAGGACGGAGCCAAGTGACCTCATTTTACCGATCAACTCCCCAGACCAGCAGGCTACCATCACGTGCGAGGCAGAAGGGAGCCCTCCTCCGCAGTACAGATGGTCACTAAATGGAACACTCATTGATCTGGGGAATGACTACCGGCGTCACATGTCTGGGGGCAGCCTGATCATTAGCAACCTGGACAAGGACCAAGACACCGGGGTGTACCAGTGCACAGCCTTCAACATGTGGGGGTCCATCCTCAGCCGCAGAGCCAGCCTACAATTTGCTTATCTTGATAACTTCAAAACTCAAACGGTGAGGAGCGCTGTCAACGTCCGTGAGGGCCAAGGCGTGGTTCTGTTATGTGGACCACCTGCACATTCTGGAGAGCTGACATTTGCATGGATCTTCAATGAATACCCGCACTTTGTCCAACAAGACAGTCGTCGTTTCATCTCTCAGGAGACCGGGAGTCTGTATATCGCTAAAGTGGAGCCCTCAGATGTTGGCAATTACACCTGTGTGGTTAACAACACTGTCACGAGGGAGAAGGTGCTCAGCTCTCCCACACCACTGGTCCTCAGAAGTGACGGAGTAATGGGTGAATATGAACCCAAAATAGAAGTTCATTTCACCGATTCAGTCCCAGCTGCGAAGGAATCGGTGGTGAAACTGGAATGCTTTGCTCTGGGAAACCCCGTTCCAGAAATAAGCTGGAGGAGAACCAGTGGCATCCCTTTCCCCAGCAAAGTGAAAATGAAGAATTCAAACGCTGTCCTTGAAATCCCTAACTTCCAGCAGGAAGACTCAGGGACATACGAATGTATGGCAGAGAATCGGCGAGGCAAAAATGCTGCACGGGGTCGTATTTCATTCCATGCCAAACCTCACTGGCTCCAGACAATGACGGACACAGCTCTGTCCATCGAGGAAAACCTCTTGTGGGAGTGTAAGGCCAATGGAAAGCCTAAACCATCCTACAGCTGGCTGAAGAATGGGGAGCAACTGATGGCTGAGGGCCAGGTACAAATCGAAAACGGGGCCCTCTCTATAGCTGCGTTAAACCTGTCAGATTCCGGGATGTATCAGTGTGTGGCTGAAAACAAACATGGAATTATTTACTCCGGTGCCCAACTAATGGTGTTAGCTTCACCTCCCAGTTTCTCCAAACGTCCATTAAGGGCCTTGCTAAAAGCTCGCTCAGGCAGCGAAGTCACTCTTGAATGCAAGCCTCAGGCCTCGCCCCCAGCAATTAGCCTGTGGAAGAAAGGGAATGAGATCCTGCAGAGAAGCGAAAGGATTACTTTGCTTCCCAATGGGACATTAAAGATCGCCAATGTAACCAGAAGGGATGCAGCCAGCTACACGTGCGTTGCTAAGAATCAGTTTGGGACAGCGAGCACAACTGGGAGGCTGCTCGTTACTGAGCCCACCAGGATCACCATGAGGCCTACTAACATGGAGATTATTGTTGGCGAGAGCATCGTGTTACCCTGCCAGATTGCCTGCGATCCAGCTCTGGATGTTTCTTTCTCGTGGGCATTCAACGGCCAGCTCATCGACTTCCAGCGAGACAGCGATCATTTTGAAAGAGTGGGCGGGAGTATATCAGGGGATCTGATGATTCGTAACATCCAGCTGAAACATGGAGGGAAATATGTCTGCGTTATTGACACTGATGTGGAGAGCCTATCCACCTCTGCCATCTTGGTTGTCAAAGGTCCGCCAGGTCCTCCGGATAAGGTAGCAGTGGAAGAAATCACAGACAGCACGGCCCAGCTTTCCTGGACTCCCGGAAGGGACAATGGCAGCCCCATCACCGGCTACATCATCCAGGCCCGCACCCCCTTTACTGTCGGCTGGCAGGCTGTTGACACAGTGCCAGAGGTTGTCAACGGTAACATGCTGACAGCTACAGTCGTTGCTCTGAACGCATGGGTGGAGTATGAGTTTAGGGTGGTGGCCCGCAATACCGTAGGCCTGGGAGAGCCCAGTCCGGCCTCGGCCAAGACCAGGACAGAGGATGCCATTCCTGATACAGCTCCCACTGATGTCGGAGGTGGAGGCGGCACAAAGTCTGAATTGGTGATAACATGGGAGCCTGTTCCCGAGGAACTGCAGAACGGAGAGGGCTTTGGCTACATCATCGCCTTCAGGCCTGTGGCCACGGTCACGTGGACGCGAGCAGTTATCTCCACGCCGGGCGTGGCACGTTACGTCTTCCGCAATGACACCATCCCACCCTTCTCGCCTTTCGACGTAAAAGTGGGGGCATACAACAACCGAGGGGAGGGGCCCTTCAGCTCTATTGCCACCGTGTATTCAGCAGAGGAAGTCCCTGGTGTGGCTCCTAAGAGGGTTAGGACTAGAAGTGTGTCTGCAGTGCAAATTGAAGTGATCTGGGAAGTTCTCCCTGCCATCCCTGAAAGAGTGCTTGGATATGAGGTCATGTACTGGGAAGACGACACCAAGCCTGACACTGTTGGCAAAGTGCGCATATCTGGAAACTACACGCTGGTTAACATCACAGGGCTGAAAGCGAACACAGTGTACTACCTCTGTGTGGCCGCATTCAATACGGCTGGCCCCGGGCCACAGTCGGCGCCCATCAACACCACCACAAAGAAACCACCTCCAGATCGGGCTCCACTCAACATACAATGGACCATGATTGGCTCCACACTCACGATGCACTGGGATCCTGTAGTAGCTTTGGATACAGAGTCAAAGGTCTCCGGATATTTGGTGCTGCTGAGGAGACAGCGCTACAATGACATCAACACTATCTTGACCAACGAAACCACTGTGGAGCTCAGCCTCTCCGCCAACGACAACTATCTCATTCAGATCAAGGCCATGAGTGAAGGCGGTGAAGGTGTGGGCAGTGAACCCATCCACATCCATAAATTAAGTATGGGAGCACGGGGCTCAGGAGCAATCCGCCTCAGCCCATTGTACCTCTCTGCAGTCCTCATCAACGCTATGCTCTGCTCCGCTTGGTGATATCTAATTGGAGCCTGCAAAGcgccctccctcccccctccatcCCTTCACTCAGCCTGTCCACTGGACTGGCACAAGGCCCGGCTTCAGTGGCAAGACTGGGAAAGGACTGGGCTCCGCCAAACTCTTAAAGGGACCAcggcacatttttttttaagggccATCAAATAGAGACGTGATGATTTGCGTGCatgatatctttaagaaattcTTCCCGCGTCATAAATGCCACCGTGCTCTaggttttattttagaagttatgaTGTCTACATGACTTATCTTCTTAGTATCTCTGGAGATACTAATGCCTTAAAACCCATTTCACTCATACAGTCCATACCAAAGTAGGAGACAGGCTGCTTACAGGTTTCTTTAACCCTATAATTAACCCCctcgttttgcaagtaaacaagTACTCACAAGAATTCTTCTTCTCAAGATCGACTTCCCAACACTTGATTGACCTAGAGTCAGTGGTTTCATCCATATTTTACTGTCtcaaaaataaatcttaaacTAAATCAGTTCCATTGACAGAACATTGACTAATATCCTCATCTCATTTCTTTGCAGCTTTGCCAAAACTTTACCAGGCTTTGTCAGATATATGAAAGATGCATAGCAAATTGATCAACTGTGCCTCAAACCCACTTATCTCTGCATACGGAAATAATATTAGGTCTGTTCGAGAGCCACAGTCTCCTGAGCTTAAGGCCCTCTCTACAATACTCTAAGAGATCGCCATCTCTTGCTCCTCTAAATAATAAATGTGTATCACACTCTGCATTCTCAGTCTAGGTAAAAAGCCTGGATTGCAGAAGAGAGAGACGCGTGGTCTCACTATGTCAAGCAGATCCCATGTGCACTGTTCCTCCTCTACATTTAGACGACCTGTGTTCAAGATTTGTATATCATATCGTGGAACGTGTGCCATCTACACCCCATATGACCAGCTGGCCCAGTGCACAATGGACTACAGGATACCAGTGCCTTCACTAGAGCTCACtccaatttctttcttttaaaataGCTTAGGGGAAAGATTCATGTTGTAGAAGAGgcattgtgtgcttttctttctgAACAAATTAGTTAGGAAGACAGGTCACTGTCTGAAGAATGTAGAGGGAGCCCATTATTGGAAAGGGTATgttaattacattttcattgAGAAAAGTACACCAGGGTTACCTAAAACAAAAAGCGTTGGAAGTTAGTATTTATGGTCTCCGGTATAATAAATGTATGACTCCATTCAAAGCATAATTTATGGGCTATTAAGGCATCAGAATAATTGATGCCAATACTGCGGTGAAAGTGTTCTGACTGGAAATGGAGCGAAAGGCATGGCTGTCATTTTACCCTCACCCCATTACTGTCTATTGGACACATACCGGACTGAACAGTAACAAAAGAACATTGCTACTCTGCTGAGGGAGCTACTTTTCACGCCCTTTTATCATGTGAATGAGTCTGTGAAAAGCCACCCAAGAAGGAGCCGAGGTGTGATTACTGGGGTCCTGACAATGATCATGTGGATGTGGAAGGATACAGTCAACTGAACTGCTACACATTACTGTGCCTTTGCCGAACATGGGGGCTGTGTACGGTCATTAGCTCAGAGGTTGTTGTCGTCTGTATTTTGCACTCTATTCCCCCTATCTTCCCCAAAGTCGAATGAAAGCACAAGGAATTGATGCAAGGTGACTGGATGTCCTCACTTAGGCGTCTGAACAGGTGTGCAGACCCCAGAGGCCTCGTAAAAAGTCCAAACGGCCGACATAATCAGGCTGTCCTATCTGCTCCTTGAATGGTTTGATAAAGCTCTGTGCTCTTTGAATGGACTGCTGCAGACCAGTCAATGCGATATTGATTTTGCTGCCCCATTATTACAGCTGTCACAATTCAGCTGCTTGATTGACTGATGGCCGTGTTCTTACTGCACTCGTTCTGTTGTGATACAGTCAATGATGTCTGACTTTATTCCCTATCAGACCACTTCATAGGCATTAttttttctgttgtgttttggtttgctTTTACTAGAAATCTCACTGTATTTGCTCAACTTGTCATAGAAGTATTTTGTAGTGTAGTGGTAAATtgtgattttgaattggagcaGTGACCTGAAATTGATTGGCTGGTTGATTATTTTGAGTCAAAGTACTACTGTATCTTTCTTTCCAGCAGCATAAAAGCCTAGTCACACCAGCATTTAAAACAGTTAAATTTCATAGAAAAATCATTTCAGTGGAATTGCTGCGATCAGCAGATGCACTTGTGAGGAGAAGTAAATCCGTGTAAATGTATACTTTGGTGGACTTTCTTGTGCCATTAACCATTAGCAAACCGTCTTGATAAACCGAATAATCCAAAATGGAGGAAGCTAACATAGCTTATTTGCTGCATTgcactaaataaataataataataataataaatggagTAAACTCTGTGAACTTAATGGCATAGTTATTTACCAAGCTAATGTTTTTTCATACTGACAGtgagcaagctagctagcttggagAGCTTTCTTTTTAAGTGATaaagaacaaaaacactgaCTAGCACTAACATGTTCCCGACTGTCTAGCGCATTTAGCTGTTGGCTCGACAGCTACTGTAGTTCACAAACTAGCCCtgcaaaaaaaactacagtatgtCCCCAATCGTCCTGCAATGTCTGTTTCACAGACACATGCAGATGAATATCGCTGTGCCACTTTCTGGTGTGACCGGGCCTCAAAGCAGCTTGTGTGTGCAAATACTTGATCCAAGTGGTTGTAATATTTCTGTTAATATCCAAATAAGGTAACCCCATCATCGCAAGATGGCAGACTTATAGgttattattttacagtttttcaatgTGTGGCAGAGTTTTCTTAATTTTGACATAGTTGTAACTCTGCCTAATGTTCCTTACCTCTGCTCATGCTCACTTAAGAACACAAAACTATTGTTTATGGCCTTGTGCTTTAATAAATACTACAAAGTACAATCTAAAGGAAGTGAAGGAAGTGATCAGACCCATCCGCTGGAATTGGTGAATTGTATTGATCACAGAACCACAACATATCTATTTATATCCACAAGGTCTGTTTGGTTAGATTGgtttctgtggttgttgttgctagAAGGAGTGTATCGCATGTAAATAGCttgcatatattttttaaaatatggcCATCAAAGACAACCTCACTGCTTTTATATAGTGTGTTCTCCGACCTTAATACTGGTGTATTAATCAATGATCTCTGTGAGATACTGACATGTAGAGTGCCATTTTCATATTGAAAAGTAACTGTTTTGTCTTGTATACTAAACTTGTGCATGTTAACCATTGTTTGTgaatttgtgttgtttttcttttctaaaaCTATAACTTAATAAAAAGGTTTATTCCAGCTA

Function

GO: NA

KEGG:

id description
K06761 CNTN3; contactin 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48400 lncRNA upstream 169401 5438157 ~ 5440609 (+) True G36114
TU48385 lncRNA upstream 331328 5276453 ~ 5278682 (+) True G36106
TU48384 lncRNA upstream 375419 5234383 ~ 5234591 (+) True G36105
TU48315 lncRNA upstream 555038 5054431 ~ 5054972 (+) True G36054
TU48312 lncRNA upstream 591374 5017652 ~ 5018636 (+) True G36051
TU48455 lncRNA downstream 29340 5694393 ~ 5694946 (+) True G36145
TU48487 lncRNA downstream 355800 6020853 ~ 6021123 (+) True G36170
TU48492 lncRNA downstream 390191 6055244 ~ 6056226 (+) True G36175
TU48491 lncRNA downstream 441817 6106870 ~ 6107152 (+) False prok2
TU48522 lncRNA downstream 446624 6111677 ~ 6114313 (+) True G36201
XM_039796916.1 mRNA upstream 566533 4956351 ~ 5043477 (+) True LOC120556975
XM_039796920.1 mRNA upstream 566533 4956351 ~ 5043477 (+) False LOC120556975
XM_039796921.1 mRNA upstream 566533 4956351 ~ 5043477 (+) False LOC120556975
XM_039796922.1 mRNA upstream 566533 4956351 ~ 5043477 (+) False LOC120556975
XM_039796923.1 mRNA upstream 566533 4956351 ~ 5043477 (+) False LOC120556975
XM_039798002.1 mRNA downstream 128679 5793732 ~ 5905163 (+) True pdzrn3b
XM_039798003.1 mRNA downstream 128679 5793732 ~ 5905163 (+) False pdzrn3b
XM_039798004.1 mRNA downstream 212411 5877464 ~ 5905163 (+) False pdzrn3b
XM_039797502.1 mRNA downstream 292218 5957271 ~ 6013954 (+) True shq1
XM_039797501.1 mRNA downstream 293539 5958592 ~ 6013954 (+) False shq1
XR_005638977.1 other upstream 675846 4911700 ~ 4934164 (+) True cdk5rap1
XR_005638978.1 other upstream 675846 4911700 ~ 4934164 (+) False cdk5rap1
TU48130 other upstream 1024535 4556704 ~ 4585475 (+) False G35921
TU48469 other downstream 255871 5920924 ~ 5924400 (+) True G36156
TU48489 other downstream 370047 6035100 ~ 6052769 (+) False rybpb
TU48651 other downstream 970249 6635302 ~ 6638387 (+) False setmar
TU48863 other downstream 1577156 7242209 ~ 7258950 (+) False G36458
TU49260 other downstream 2562709 8227762 ~ 8228720 (+) True G36744

Expression Profile